Masatoshi Nei - Publications

Affiliations: 
1972-1990 University of Texas, Houston, Houston, TX, United States 
 1990- Pennsylvania State University, State College, PA, United States 
Area:
evolutionary biology
Website:
https://news.psu.edu/story/280143/2013/06/25/academics/kyoto-prize-awarded-penn-states-masatoshi-nei

193 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Katsura Y, Nei M. The reproducibility of an inferred tree and the diploidization of gene segregation after genome duplication. Genome Biology and Evolution. PMID 31950994 DOI: 10.1093/gbe/evz272  0.413
2017 Katsura Y, Stanley CE, Kumar S, Nei M. The Reliability and Stability of an Inferred Phylogenetic Tree from Empirical Data. Molecular Biology and Evolution. PMID 28100791 DOI: 10.1093/molbev/msw272  0.446
2016 Yoshida R, Nei M. Efficiencies of the NJp, maximum likelihood, and Bayesian methods of phylogenetic construction for compositional and non-compositional genes. Molecular Biology and Evolution. PMID 26929244 DOI: 10.1093/Molbev/Msw042  0.31
2014 Takezaki N, Nei M, Tamura K. POPTREEW: web version of POPTREE for constructing population trees from allele frequency data and computing some other quantities. Molecular Biology and Evolution. 31: 1622-4. PMID 24603277 DOI: 10.1093/molbev/msu093  0.304
2014 Zhang Z, Klein J, Nei M. Evolution of the sex-lethal gene in insects and origin of the sex-determination system in Drosophila. Journal of Molecular Evolution. 78: 50-65. PMID 24271947 DOI: 10.1007/s00239-013-9599-3  0.379
2013 Miura S, Zhang Z, Nei M. Random fluctuation of selection coefficients and the extent of nucleotide variation in human populations. Proceedings of the National Academy of Sciences of the United States of America. 110: 10676-81. PMID 23754436 DOI: 10.1073/Pnas.1308462110  0.579
2012 Nozawa M, Miura S, Nei M. Origins and evolution of microRNA genes in plant species. Genome Biology and Evolution. 4: 230-9. PMID 22223755 DOI: 10.1093/Gbe/Evs002  0.557
2011 Nei M, Nozawa M. Roles of mutation and selection in speciation: from Hugo de Vries to the modern genomic era. Genome Biology and Evolution. 3: 812-29. PMID 21903731 DOI: 10.1093/gbe/evr028  0.384
2011 Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution. 28: 2731-9. PMID 21546353 DOI: 10.1093/Molbev/Msr121  0.54
2011 Miura S, Nozawa M, Nei M. Evolutionary changes of the target sites of two microRNAs encoded in the Hox gene cluster of Drosophila and other insect species. Genome Biology and Evolution. 3: 129-39. PMID 21187351 DOI: 10.1093/Gbe/Evq088  0.549
2010 Nozawa M, Miura S, Nei M. Origins and evolution of microRNA genes in Drosophila species. Genome Biology and Evolution. 2: 180-9. PMID 20624724 DOI: 10.1093/Gbe/Evq009  0.552
2010 Nei M, Suzuki Y, Nozawa M. The neutral theory of molecular evolution in the genomic era. Annual Review of Genomics and Human Genetics. 11: 265-89. PMID 20565254 DOI: 10.1146/annurev-genom-082908-150129  0.352
2010 Nozawa M, Suzuki Y, Nei M. Is positive selection responsible for the evolution of a duplicate UV-sensitive opsin gene in Heliconius butterflies? Proceedings of the National Academy of Sciences of the United States of America. 107: E96; author reply E9. PMID 20457891 DOI: 10.1073/pnas.1003657107  0.382
2010 Takezaki N, Nei M, Tamura K. POPTREE2: Software for constructing population trees from allele frequency data and computing other population statistics with Windows interface. Molecular Biology and Evolution. 27: 747-52. PMID 20022889 DOI: 10.1093/molbev/msp312  0.323
2010 Das S, Mohamedy U, Hirano M, Nei M, Nikolaidis N. Analysis of the immunoglobulin light chain genes in zebra finch: evolutionary implications. Molecular Biology and Evolution. 27: 113-20. PMID 19744999 DOI: 10.1093/Molbev/Msp212  0.594
2009 Das S, Nikolaidis N, Nei M. Genomic organization and evolution of immunoglobulin kappa gene enhancers and kappa deleting element in mammals. Molecular Immunology. 46: 3171-7. PMID 19560204 DOI: 10.1016/J.Molimm.2009.05.180  0.581
2009 Takezaki N, Nei M. Genomic drift and evolution of microsatellite DNAs in human populations. Molecular Biology and Evolution. 26: 1835-40. PMID 19406937 DOI: 10.1093/molbev/msp091  0.358
2009 Nozawa M, Suzuki Y, Nei M. Reliabilities of identifying positive selection by the branch-site and the site-prediction methods. Proceedings of the National Academy of Sciences of the United States of America. 106: 6700-5. PMID 19339501 DOI: 10.1073/pnas.0901855106  0.359
2009 Xu G, Ma H, Nei M, Kong H. Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification. Proceedings of the National Academy of Sciences of the United States of America. 106: 835-40. PMID 19126682 DOI: 10.1073/Pnas.0812043106  0.513
2009 Ye X, Nikolaidis N, Nei M, Lai Z. Evolution of the mob Gene Family The Open Cell Signaling Journal. 1: 1-11. DOI: 10.2174/1876390100901010001  0.522
2009 Nozawa M, Suzuki Y, Nei M. Response to Yang et al.: Problems with Bayesian methods of detecting positive selection at the DNA sequence level Proceedings of the National Academy of Sciences of the United States of America. 106: E96. DOI: 10.1073/pnas.0906089106  0.358
2008 Nozawa M, Nei M. Genomic drift and copy number variation of chemosensory receptor genes in humans and mice. Cytogenetic and Genome Research. 123: 263-9. PMID 19287163 DOI: 10.1159/000184716  0.425
2008 Nei M, Niimura Y, Nozawa M. The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity. Nature Reviews. Genetics. 9: 951-63. PMID 19002141 DOI: 10.1038/nrg2480  0.43
2008 Das S, Nikolaidis N, Klein J, Nei M. Evolutionary redefinition of immunoglobulin light chain isotypes in tetrapods using molecular markers. Proceedings of the National Academy of Sciences of the United States of America. 105: 16647-52. PMID 18940927 DOI: 10.1073/Pnas.0808800105  0.628
2008 Chalkia D, Nikolaidis N, Makalowski W, Klein J, Nei M. Origins and evolution of the formin multigene family that is involved in the formation of actin filaments. Molecular Biology and Evolution. 25: 2717-33. PMID 18840602 DOI: 10.1093/Molbev/Msn215  0.789
2008 Lin Z, Ma H, Nei M. Ultraconserved coding regions outside the homeobox of mammalian Hox genes. Bmc Evolutionary Biology. 8: 260. PMID 18816392 DOI: 10.1186/1471-2148-8-260  0.744
2008 Kumar S, Nei M, Dudley J, Tamura K. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings in Bioinformatics. 9: 299-306. PMID 18417537 DOI: 10.1093/Bib/Bbn017  0.518
2008 Takezaki N, Nei M. Empirical tests of the reliability of phylogenetic trees constructed with microsatellite DNA. Genetics. 178: 385-92. PMID 18202381 DOI: 10.1534/genetics.107.081505  0.338
2008 Das S, Nozawa M, Klein J, Nei M. Evolutionary dynamics of the immunoglobulin heavy chain variable region genes in vertebrates. Immunogenetics. 60: 47-55. PMID 18196235 DOI: 10.1007/s00251-007-0270-2  0.47
2007 Nozawa M, Kawahara Y, Nei M. Genomic drift and copy number variation of sensory receptor genes in humans. Proceedings of the National Academy of Sciences of the United States of America. 104: 20421-6. PMID 18077390 DOI: 10.1073/pnas.0709956104  0.448
2007 Lin Z, Nei M, Ma H. The origins and early evolution of DNA mismatch repair genes--multiple horizontal gene transfers and co-evolution. Nucleic Acids Research. 35: 7591-603. PMID 17965091 DOI: 10.1093/Nar/Gkm921  0.743
2007 Niimura Y, Nei M. Extensive gains and losses of olfactory receptor genes in mammalian evolution. Plos One. 2: e708. PMID 17684554 DOI: 10.1371/journal.pone.0000708  0.465
2007 Nei M. The new mutation theory of phenotypic evolution. Proceedings of the National Academy of Sciences of the United States of America. 104: 12235-42. PMID 17640887 DOI: 10.1073/pnas.0703349104  0.391
2007 Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution. 24: 1596-9. PMID 17488738 DOI: 10.1093/molbev/msm092  0.512
2007 Nozawa M, Nei M. Evolutionary dynamics of olfactory receptor genes in Drosophila species. Proceedings of the National Academy of Sciences of the United States of America. 104: 7122-7. PMID 17438280 DOI: 10.1073/pnas.0702133104  0.468
2006 Lin Z, Kong H, Nei M, Ma H. Origins and evolution of the recA/RAD51 gene family: evidence for ancient gene duplication and endosymbiotic gene transfer. Proceedings of the National Academy of Sciences of the United States of America. 103: 10328-33. PMID 16798872 DOI: 10.1073/Pnas.0604232103  0.758
2006 Niimura Y, Nei M. Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates. Journal of Human Genetics. 51: 505-17. PMID 16607462 DOI: 10.1007/s10038-006-0391-8  0.45
2006 Hao L, Klein J, Nei M. Heterogeneous but conserved natural killer receptor gene complexes in four major orders of mammals. Proceedings of the National Academy of Sciences of the United States of America. 103: 3192-7. PMID 16492762 DOI: 10.1073/Pnas.0511280103  0.587
2005 Nei M, Rooney AP. Concerted and birth-and-death evolution of multigene families. Annual Review of Genetics. 39: 121-52. PMID 16285855 DOI: 10.1146/annurev.genet.39.073003.112240  0.449
2005 Nei M. Selectionism and neutralism in molecular evolution. Molecular Biology and Evolution. 22: 2318-42. PMID 16120807 DOI: 10.1093/molbev/msi242  0.435
2005 Nam J, Nei M. Evolutionary change of the numbers of homeobox genes in bilateral animals. Molecular Biology and Evolution. 22: 2386-94. PMID 16079247 DOI: 10.1093/Molbev/Msi229  0.628
2005 Niimura Y, Nei M. Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods. Proceedings of the National Academy of Sciences of the United States of America. 102: 6039-44. PMID 15824306 DOI: 10.1073/pnas.0501922102  0.458
2005 Nikolaidis N, Makalowska I, Chalkia D, Makalowski W, Klein J, Nei M. Origin and evolution of the chicken leukocyte receptor complex. Proceedings of the National Academy of Sciences of the United States of America. 102: 4057-62. PMID 15753291 DOI: 10.1073/Pnas.0501040102  0.795
2005 Hao L, Nei M. Rapid expansion of killer cell immunoglobulin-like receptor genes in primates and their coevolution with MHC Class I genes. Gene. 347: 149-59. PMID 15733532 DOI: 10.1016/J.Gene.2004.12.012  0.586
2005 Niimura Y, Nei M. Comparative evolutionary analysis of olfactory receptor gene clusters between humans and mice. Gene. 346: 13-21. PMID 15716120 DOI: 10.1016/j.gene.2004.09.025  0.41
2005 Niimura Y, Nei M. Evolutionary changes of the number of olfactory receptor genes in the human and mouse lineages. Gene. 346: 23-8. PMID 15716099 DOI: 10.1016/j.gene.2004.09.027  0.413
2005 Glazko G, Veeramachaneni V, Nei M, Maka?owski W. Eighty percent of proteins are different between humans and chimpanzees. Gene. 346: 215-9. PMID 15716009 DOI: 10.1016/J.Gene.2004.11.003  0.372
2005 Nikolaidis N, Klein J, Nei M. Origin and evolution of the Ig-like domains present in mammalian leukocyte receptors: insights from chicken, frog, and fish homologues. Immunogenetics. 57: 151-7. PMID 15702330 DOI: 10.1007/S00251-004-0764-0  0.556
2005 Nam J, Kaufmann K, Theissen G, Nei M. A simple method for predicting the functional differentiation of duplicate genes and its application to MIKC-type MADS-box genes. Nucleic Acids Research. 33: e12. PMID 15659573 DOI: 10.1093/Nar/Gni003  0.58
2004 Hao L, Nei M. Genomic organization and evolutionary analysis of Ly49 genes encoding the rodent natural killer cell receptors: rapid evolution by repeated gene duplication. Immunogenetics. 56: 343-54. PMID 15316687 DOI: 10.1007/S00251-004-0703-0  0.594
2004 Kumar S, Tamura K, Nei M. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Briefings in Bioinformatics. 5: 150-63. PMID 15260895 DOI: 10.1093/Bib/5.2.150  0.544
2004 Tamura K, Nei M, Kumar S. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proceedings of the National Academy of Sciences of the United States of America. 101: 11030-5. PMID 15258291 DOI: 10.1073/pnas.0404206101  0.518
2004 Suzuki Y, Nei M. False-positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus. Molecular Biology and Evolution. 21: 914-21. PMID 15014169 DOI: 10.1093/molbev/msh098  0.376
2004 Nam J, Kim J, Lee S, An G, Ma H, Nei M. Type I MADS-box genes have experienced faster birth-and-death evolution than type II MADS-box genes in angiosperms. Proceedings of the National Academy of Sciences of the United States of America. 101: 1910-5. PMID 14764899 DOI: 10.1073/Pnas.0308430100  0.653
2004 Nikolaidis N, Nei M. Concerted and nonconcerted evolution of the Hsp70 gene superfamily in two sibling species of nematodes. Molecular Biology and Evolution. 21: 498-505. PMID 14694072 DOI: 10.1093/Molbev/Msh041  0.628
2003 Misawa K, Nei M. Reanalysis of Murphy et al.'s data gives various mammalian phylogenies and suggests overcredibility of Bayesian trees. Journal of Molecular Evolution. 57: S290-6. PMID 15008427 DOI: 10.1007/s00239-003-0039-7  0.34
2003 Niimura Y, Nei M. Evolution of olfactory receptor genes in the human genome. Proceedings of the National Academy of Sciences of the United States of America. 100: 12235-40. PMID 14507991 DOI: 10.1073/pnas.1635157100  0.456
2003 Nam J, dePamphilis CW, Ma H, Nei M. Antiquity and evolution of the MADS-box gene family controlling flower development in plants. Molecular Biology and Evolution. 20: 1435-47. PMID 12777513 DOI: 10.1093/Molbev/Msg152  0.667
2003 Piontkivska H, Nei M. Birth-and-death evolution in primate MHC class I genes: divergence time estimates. Molecular Biology and Evolution. 20: 601-9. PMID 12679545 DOI: 10.1093/molbev/msg064  0.425
2003 Glazko GV, Nei M. Estimation of divergence times for major lineages of primate species. Molecular Biology and Evolution. 20: 424-34. PMID 12644563 DOI: 10.1093/molbev/msg050  0.389
2002 Suzuki Y, Glazko GV, Nei M. Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proceedings of the National Academy of Sciences of the United States of America. 99: 16138-43. PMID 12451182 DOI: 10.1073/pnas.212646199  0.362
2002 Itoh T, Martin W, Nei M. Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts. Proceedings of the National Academy of Sciences of the United States of America. 99: 12944-8. PMID 12235368 DOI: 10.1073/Pnas.192449699  0.375
2002 Nei M, Glazko GV. The Wilhelmine E. Key 2001 Invitational Lecture. Estimation of divergence times for a few mammalian and several primate species. The Journal of Heredity. 93: 157-64. PMID 12195029 DOI: 10.1093/Jhered/93.3.157  0.323
2002 Piontkivska H, Rooney AP, Nei M. Purifying selection and birth-and-death evolution in the histone H4 gene family. Molecular Biology and Evolution. 19: 689-97. PMID 11961102 DOI: 10.1093/Oxfordjournals.Molbev.A004127  0.424
2002 Suzuki Y, Nei M. Origin and evolution of influenza virus hemagglutinin genes. Molecular Biology and Evolution. 19: 501-9. PMID 11919291 DOI: 10.1093/Oxfordjournals.Molbev.A004105  0.303
2002 Su C, Nguyen VK, Nei M. Adaptive evolution of variable region genes encoding an unusual type of immunoglobulin in camelids. Molecular Biology and Evolution. 19: 205-15. PMID 11861879 DOI: 10.1093/Oxfordjournals.Molbev.A004073  0.547
2002 Rooney AP, Piontkivska H, Nei M. Molecular evolution of the nontandemly repeated genes of the histone 3 multigene family. Molecular Biology and Evolution. 19: 68-75. PMID 11752191 DOI: 10.1093/Oxfordjournals.Molbev.A003983  0.437
2001 Kumar S, Tamura K, Jakobsen IB, Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics (Oxford, England). 17: 1244-5. PMID 11751241 DOI: 10.1093/Bioinformatics/17.12.1244  0.371
2001 Suzuki Y, Nei M. Reliabilities of parsimony-based and likelihood-based methods for detecting positive selection at single amino acid sites. Molecular Biology and Evolution. 18: 2179-85. PMID 11719567 DOI: 10.1093/Oxfordjournals.Molbev.A003764  0.356
2001 Su C, Nei M. Evolutionary dynamics of the T-cell receptor VB gene family as inferred from the human and mouse genomic sequences. Molecular Biology and Evolution. 18: 503-13. PMID 11264401 DOI: 10.1093/Oxfordjournals.Molbev.A003829  0.632
2001 Nei M, Xu P, Glazko G. Estimation of divergence times from multiprotein sequences for a few mammalian species and several distantly related organisms. Proceedings of the National Academy of Sciences of the United States of America. 98: 2497-502. PMID 11226267 DOI: 10.1073/Pnas.051611498  0.329
2000 Nei M, Rogozin IB, Piontkivska H. Purifying selection and birth-and-death evolution in the ubiquitin gene family. Proceedings of the National Academy of Sciences of the United States of America. 97: 10866-71. PMID 11005860 DOI: 10.1073/Pnas.97.20.10866  0.417
2000 Zhang J, Nei M. Positive selection in the evolution of mammalian interleukin-2 genes. Molecular Biology and Evolution. 17: 1413-6. PMID 10958857 DOI: 10.1093/Oxfordjournals.Molbev.A026425  0.557
2000 Takahashi K, Nei M. Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used. Molecular Biology and Evolution. 17: 1251-8. PMID 10908645 DOI: 10.1093/Oxfordjournals.Molbev.A026408  0.324
2000 Takahashi K, Rooney AP, Nei M. Origins and divergence times of mammalian class II MHC gene clusters. The Journal of Heredity. 91: 198-204. PMID 10833044 DOI: 10.1093/Jhered/91.3.198  0.394
2000 Ota T, Sitnikova T, Nei M. Evolution of vertebrate immunoglobulin variable gene segments. Current Topics in Microbiology and Immunology. 248: 221-45. PMID 10793480 DOI: 10.1007/978-3-642-59674-2_10  0.42
2000 Rooney AP, Zhang J, Nei M. An unusual form of purifying selection in a sperm protein. Molecular Biology and Evolution. 17: 278-83. PMID 10677850 DOI: 10.1093/Oxfordjournals.Molbev.A026307  0.552
1999 Su C, Jakobsen I, Gu X, Nei M. Diversity and evolution of T-cell receptor variable region genes in mammals and birds. Immunogenetics. 50: 301-8. PMID 10630294 DOI: 10.1007/S002510050606  0.59
1999 Su C, Nei M. Fifty-million-year-old polymorphism at an immunoglobulin variable region gene locus in the rabbit evolutionary lineage. Proceedings of the National Academy of Sciences of the United States of America. 96: 9710-5. PMID 10449759 DOI: 10.1073/Pnas.96.17.9710  0.569
1999 Gu X, Nei M. Locus specificity of polymorphic alleles and evolution by a birth-and-death process in mammalian MHC genes. Molecular Biology and Evolution. 16: 147-56. PMID 10028282 DOI: 10.1093/Oxfordjournals.Molbev.A026097  0.37
1998 Nei M, Zhang J. Molecular origin of species. Science (New York, N.Y.). 282: 1428-9. PMID 9867649 DOI: 10.1126/Science.282.5393.1428  0.452
1998 Nei M, Kumar S, Takahashi K. The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small. Proceedings of the National Academy of Sciences of the United States of America. 95: 12390-7. PMID 9770497 DOI: 10.1073/pnas.95.21.12390  0.474
1998 Zhang J, Rosenberg HF, Nei M. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proceedings of the National Academy of Sciences of the United States of America. 95: 3708-13. PMID 9520431 DOI: 10.1073/Pnas.95.7.3708  0.603
1998 Sitnikova T, Nei M. Evolution of immunoglobulin kappa chain variable region genes in vertebrates. Molecular Biology and Evolution. 15: 50-60. PMID 9491604 DOI: 10.1093/Oxfordjournals.Molbev.A025846  0.439
1997 Zhang J, Kumar S, Nei M. Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes. Molecular Biology and Evolution. 14: 1335-8. PMID 9402743 DOI: 10.1093/Oxfordjournals.Molbev.A025743  0.536
1997 Nei M, Gu X, Sitnikova T. Evolution by the birth-and-death process in multigene families of the vertebrate immune system. Proceedings of the National Academy of Sciences of the United States of America. 94: 7799-806. PMID 9223266 DOI: 10.1073/pnas.94.15.7799  0.446
1997 Nei M, Zhang J, Yokoyama S. Color vision of ancestral organisms of higher primates. Molecular Biology and Evolution. 14: 611-8. PMID 9190062 DOI: 10.1093/Oxfordjournals.Molbev.A025800  0.559
1997 Zhang J, Nei M. Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods. Journal of Molecular Evolution. 44: S139-46. PMID 9071022 DOI: 10.1007/PL00000067  0.483
1996 Nei M. Phylogenetic analysis in molecular evolutionary genetics. Annual Review of Genetics. 30: 371-403. PMID 8982459 DOI: 10.1146/annurev.genet.30.1.371  0.348
1996 Zhang J, Nei M. Evolution of Antennapedia-class homeobox genes. Genetics. 142: 295-303. PMID 8770606  0.509
1996 Russo CA, Takezaki N, Nei M. Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny. Molecular Biology and Evolution. 13: 525-36. PMID 8742641 DOI: 10.1093/Oxfordjournals.Molbev.A025613  0.379
1996 Nei M, Takezaki N. The root of the phylogenetic tree of human populations. Molecular Biology and Evolution. 13: 170-7. PMID 8583889 DOI: 10.1093/Oxfordjournals.Molbev.A025553  0.33
1995 Ota T, Nei M. Evolution of immunoglobulin VH pseudogenes in chickens Molecular Biology and Evolution. 12: 94-102. PMID 7877500 DOI: 10.1093/Oxfordjournals.Molbev.A040194  0.476
1995 Rzhetsky A, Kumar S, Nei M. Four-cluster analysis: a simple method to test phylogenetic hypotheses. Molecular Biology and Evolution. 12: 163-7. PMID 7877491 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A040185  0.448
1995 Rzhetsky A, Nei M. Tests of applicability of several substitution models for DNA sequence data Molecular Biology and Evolution. 12: 131-151. PMID 7877488 DOI: 10.1093/Oxfordjournals.Molbev.A040182  0.332
1995 Russo CA, Takezaki N, Nei M. Molecular phylogeny and divergence times of drosophilid species. Molecular Biology and Evolution. 12: 391-404. PMID 7739381 DOI: 10.1093/Oxfordjournals.Molbev.A040214  0.335
1995 Sitnikova T, Rzhetsky A, Nei M. Interior-branch and bootstrap tests of phylogenetic trees. Molecular Biology and Evolution. 12: 319-33. PMID 7700156 DOI: 10.1093/Oxfordjournals.Molbev.A040205  0.322
1995 Takezaki N, Rzhetsky A, Nei M. Phylogenetic test of the molecular clock and linearized trees. Molecular Biology and Evolution. 12: 823-33. PMID 7476128 DOI: 10.1093/Oxfordjournals.Molbev.A040259  0.339
1995 Nei M. The History and Geography of Human Genes Trends in Genetics. 11: 292-293. DOI: 10.1016/S0168-9525(00)89078-2  0.387
1994 Tateno Y, Takezaki N, Nei M. Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site Molecular Biology and Evolution. 11: 261-277. PMID 8170367 DOI: 10.1093/Oxfordjournals.Molbev.A040108  0.312
1994 Ota T, Nei M. Variance and covariances of the numbers of synonymous and nonsynonymous substitutions per site Molecular Biology and Evolution. 11: 613-619. PMID 8078400 DOI: 10.1093/Oxfordjournals.Molbev.A040140  0.344
1994 Kumar S, Tamura K, Nei M. MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers. Computer Applications in the Biosciences : Cabios. 10: 189-91. PMID 8019868 DOI: 10.1093/bioinformatics/10.2.189  0.35
1994 Ota T, Nei M. Divergent evolution and evolution by the birth-and-death process in the immunoglobulin VH gene family Molecular Biology and Evolution. 11: 469-482. PMID 8015440 DOI: 10.1093/Oxfordjournals.Molbev.A040127  0.466
1994 Rzhetsky A, Nei M. Unbiased estimates of the number of nucleotide substitutions when substitution rate varies among different sites Journal of Molecular Evolution. 38: 295-299. PMID 8006996 DOI: 10.1007/BF00176091  0.311
1994 Takezaki N, Nei M. Inconsistency of the maximum parsimony method when the rate of nucleotide substitution is constant Journal of Molecular Evolution. 39: 210-218. PMID 7932784 DOI: 10.1007/BF00163810  0.348
1994 Hughes AL, Hughes MK, Howell CY, Nei M. Natural selection at the class II major histocompatibility complex loci of mammals. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 346: 359-66; discussion 3. PMID 7708830 DOI: 10.1098/Rstb.1994.0153  0.519
1993 Hughes AL, Nei M. Evolutionary relationships of the classes of major histocompatibility complex genes. Immunogenetics. 37: 337-46. PMID 8428767 DOI: 10.1007/BF00216798  0.493
1993 Nei M, Roychoudhury AK. Evolutionary relationships of human populations on a global scale Molecular Biology and Evolution. 10: 927-943. PMID 8412653 DOI: 10.1093/Oxfordjournals.Molbev.A040059  0.364
1993 Rzhetsky A, Nei M. Theoretical foundation of the minimum-evolution method of phylogenetic inference Molecular Biology and Evolution. 10: 1073-1095. PMID 8412650 DOI: 10.1093/Oxfordjournals.Molbev.A040056  0.327
1993 Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees Molecular Biology and Evolution. 10: 512-526. PMID 8336541 DOI: 10.1093/Oxfordjournals.Molbev.A040023  0.32
1993 Nei M, Takahata N. Effective population size, genetic diversity, and coalescence time in subdivided populations. Journal of Molecular Evolution. 37: 240-4. PMID 8230248 DOI: 10.1007/BF00175500  0.308
1992 Hughes AL, Nei M. Maintenance of MHC polymorphism. Nature. 355: 402-3. PMID 1734277 DOI: 10.1038/355402b0  0.409
1992 Hughes AL, Nei M. Models of host-parasite interaction and MHC polymorphism. Genetics. 132: 863-4. PMID 1468636  0.388
1992 Rzhetsky A, Nei M. Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference Journal of Molecular Evolution. 35: 367-375. PMID 1404422 DOI: 10.1007/BF00161174  0.333
1991 Jin L, Nei M. Relative efficiencies of the maximum-parsimony and distance-matrix methods of phylogeny construction for restriction data Molecular Biology and Evolution. 8: 356-365. PMID 1677154 DOI: 10.1093/Oxfordjournals.Molbev.A040648  0.347
1990 Jin L, Nei M. Limitations of the evolutionary parsimony method of phylogenetic analysis Molecular Biology and Evolution. 7: 82-102. PMID 2299983 DOI: 10.1093/Oxfordjournals.Molbev.A040588  0.332
1990 Hughes AL, Ota T, Nei M. Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules. Molecular Biology and Evolution. 7: 515-24. PMID 2283951 DOI: 10.1093/Oxfordjournals.Molbev.A040626  0.508
1990 Livshits G, Nei M. Relationships between intrapopulational and interpopulational genetic diversity in man Annals of Human Biology. 17: 501-513. PMID 2281941 DOI: 10.1080/03014469000001272  0.356
1990 Hughes AL, Nei M. Evolutionary relationships of class II major-histocompatibility-complex genes in mammals. Molecular Biology and Evolution. 7: 491-514. PMID 2126590 DOI: 10.1093/Oxfordjournals.Molbev.A040622  0.601
1989 Tanaka T, Nei M. Positive Darwinian selection observed at the variable-region genes of immunoglobulins Molecular Biology and Evolution. 6: 447-459. PMID 2796726 DOI: 10.1093/Oxfordjournals.Molbev.A040569  0.4
1989 Hughes AL, Nei M. Ancient interlocus exon exchange in the history of the HLA-A locus. Genetics. 122: 681-6. PMID 2759423  0.51
1989 Nei M. Genetic relationships of europeans, asians and africans and the origin of modern homo sapiens Human Heredity. 39: 276-281. PMID 2613254 DOI: 10.1159/000153872  0.31
1989 Nei M, Jin L. Variances of the average numbers of nucleotide substitutions within and between populations Molecular Biology and Evolution. 6: 290-300. PMID 2576093 DOI: 10.1093/Oxfordjournals.Molbev.A040547  0.343
1989 Hughes AL, Nei M. Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection. Proceedings of the National Academy of Sciences of the United States of America. 86: 958-62. PMID 2492668 DOI: 10.1073/Pnas.86.3.958  0.527
1989 Hughes AL, Nei M. Evolution of the major histocompatibility complex: independent origin of nonclassical class I genes in different groups of mammals. Molecular Biology and Evolution. 6: 559-79. PMID 2484936 DOI: 10.1093/Oxfordjournals.Molbev.A040573  0.639
1988 Gojobori T, Nei M. Concerted evolution of the immunoglobulin VH gene family. Molecular Biology and Evolution. 1: 195-212. PMID 6443795 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A040311  0.471
1988 Nei M, Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Molecular Biology and Evolution. 3: 418-26. PMID 3444411 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A040410  0.306
1988 Hughes AL, Nei M. Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature. 335: 167-70. PMID 3412472 DOI: 10.1038/335167a0  0.575
1988 Sourdis J, Nei M. Relative efficiencies of the maximum parsimony and distance-matrix methods in obtaining the correct phylogenetic tree Molecular Biology and Evolution. 5: 298-311. PMID 3386530 DOI: 10.1093/Oxfordjournals.Molbev.A040497  0.335
1988 Pamilo P, Nei M. Relationship between gene trees and species trees Molecular Biology and Evolution. 5: 568-583. PMID 3193878 DOI: 10.1093/Oxfordjournals.Molbev.A040517  0.414
1988 Nei M. Relative roles of mutation and selection in the maintenance of genetic variability Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences. 319: 615-629. PMID 2905496 DOI: 10.1098/Rstb.1988.0069  0.362
1988 Nei M. THE EVOLUTION OF DNA SEQUENCES Evolution. 42: 1359-1360. DOI: 10.1111/J.1558-5646.1988.TB04197.X  0.336
1987 Pamilo P, Nei M, Li WH. Accumulation of mutations in sexual and asexual populations Genetical Research. 49: 135-146. PMID 3596234 DOI: 10.1017/S0016672300026938  0.523
1986 Varvio SL, Chakraborty R, Nei M. Genetic variation in subdivided populations and conservation genetics Heredity. 57: Pt 2/-. PMID 3781870 DOI: 10.1038/Hdy.1986.109  0.325
1986 Gojobori T, Nei M. Relative contributions of germline gene variation and somatic mutation to immunoglobulin diversity in the mouse Molecular Biology and Evolution. 3: 156-167. PMID 3444398 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A040387  0.376
1986 Saitou N, Nei M. Polymorphism and evolution of influenza A virus genes. Molecular Biology and Evolution. 3: 57-74. PMID 3444396 DOI: 10.1093/Oxfordjournals.Molbev.A040381  0.405
1986 Saitou N, Nei M. The number of nucleotides required to determine the branching order of three species, with special reference to the human-chimpanzee-gorilla divergence Journal of Molecular Evolution. 24: 189-204. PMID 3104615 DOI: 10.1007/BF02099966  0.35
1985 Roychoudhury AK, Nei M. Genetic Relationships between Indians and Their Neighboring Populations Human Heredity. 35: 201-206. PMID 4029959 DOI: 10.1159/000153545  0.32
1985 Stephens JC, Nei M. Phylogenetic analysis of polymorphic DNA sequences at the Adh locus in Drosophila melanogaster and its sibling species. Journal of Molecular Evolution. 22: 289-300. PMID 3003368 DOI: 10.1007/Bf02115684  0.449
1985 Nei M, Stephens JC, Saitou N. Methods for computing the standard errors of branching points in an evolutionary tree and their application to molecular data from humans and apes. Molecular Biology and Evolution. 2: 66-85. PMID 2897060 DOI: 10.1093/Oxfordjournals.Molbev.A040333  0.336
1985 Nei M, Tajima F. Evolutionary change of restriction cleavage sites and phylogenetic inference for man and apes. Molecular Biology and Evolution. 2: 189-205. PMID 2835574 DOI: 10.1093/Oxfordjournals.Molbev.A040345  0.323
1984 Tajima F, Nei M. Estimation of evolutionary distance between nucleotide sequences. Molecular Biology and Evolution. 1: 269-285. PMID 6599968 DOI: 10.1093/Oxfordjournals.Molbev.A040317  0.406
1983 Ryman N, Chakraborty R, Nei M. Differences in the relative distribution of human gene diversity between electrophoretic and red and white cell antigen loci. Human Heredity. 33: 93-102. PMID 6862458 DOI: 10.1159/000153357  0.405
1983 Nei M, Chesser RK. Estimation of fixation indices and gene diversities Annals of Human Genetics. 47: 253-259. PMID 6614868 DOI: 10.1111/J.1469-1809.1983.Tb00993.X  0.363
1983 Nei M, Tajima F, Tateno Y. Accuracy of estimated phylogenetic trees from molecular data Journal of Molecular Evolution. 19: 153-170. PMID 6571220 DOI: 10.1007/Bf02300753  0.38
1982 Tateno Y, Nei M, Tajima F. Accuracy of estimated phylogenetic trees from molecular data. I. Distantly related species. Journal of Molecular Evolution. 18: 387-404. PMID 7175956 DOI: 10.1007/Bf01840887  0.357
1982 Nei M, Li WH, Tajima F, Narain P. Polymorphism and evolution of the Rh blood groups. Jinrui Idengaku Zasshi. the Japanese Journal of Human Genetics. 26: 263-78. PMID 6808203 DOI: 10.1007/Bf01876357  0.526
1982 Tajima F, Nei M. Biases of the estimates of DNA divergence obtained by the restriction enzyme technique. Journal of Molecular Evolution. 18: 115-120. PMID 6284946 DOI: 10.1007/Bf01810830  0.318
1982 Li W, GOJOBORI T, NEI M. Positive selection causes purifying selection (reply) Nature. 295: 630-630. DOI: 10.1038/295630B0  0.47
1982 Chakraborty R, Nei M. Genetic differentiation of quantitative characters between populations or species: I. Mutation and random genetic drift Genetical Research. 39: 303-314. DOI: 10.1017/S0016672300020978  0.338
1981 Li WH, Gojobori T, Nei M. Pseudogenes as a paradigm of neutral evolution. Nature. 292: 237-9. PMID 7254315 DOI: 10.1038/292237A0  0.58
1981 Gojobori T, Nei M. Inter-RNA homology and possible roles of small RNAs. Journal of Molecular Evolution. 17: 245-50. PMID 6167735 DOI: 10.1007/BF01732762  0.305
1981 Nei M, Tateno Y. Statistical properties of the Jukes-Holmquist method of estimating the number of nucleotide substitutions: reply to Holmquist and Conroy's criticism. Journal of Molecular Evolution. 17: 182-187. PMID 6167733 DOI: 10.1007/Bf01733912  0.31
1981 Nei M. Proportion of informative families for genetic counseling with linked marker genes. Jinrui Idengaku Zasshi. the Japanese Journal of Human Genetics. 24: 131-42. PMID 299082 DOI: 10.1007/BF01888684  0.434
1981 Nei M. Gene Differences Between Human Races The American Naturalist. 117: 88-89. DOI: 10.1086/283688  0.39
1980 Nei M, Li W. Non-random association between electromorphs and inversion chromosomes in finite populations Genetics Research. 35: 65-83. PMID 7450499 DOI: 10.1017/S001667230001394X  0.469
1979 Nei M, Li W. Mathematical model for studying genetic variation in terms of restriction endonucleases Proceedings of the National Academy of Sciences of the United States of America. 76: 5269-5273. PMID 291943 DOI: 10.1073/Pnas.76.10.5269  0.535
1978 Nei M. The theory of genetic distance and evolution of human races Journal of Human Genetics. 23: 341-369. PMID 745300 DOI: 10.1007/Bf01908190  0.418
1978 Nei M, Tateno Y. Nonrandom amino acid substitution and estimation of the number of nucleotide substitutions in evolution Journal of Molecular Evolution. 11: 333-347. PMID 722807 DOI: 10.1007/Bf01733841  0.307
1978 Nei M, Fuerst PA, Chakraborty R. Subunit molecular weight and genetic variability of proteins in natural populations. Proceedings of the National Academy of Sciences of the United States of America. 75: 3359-62. PMID 277936 DOI: 10.1073/Pnas.75.7.3359  0.304
1977 Chakraborty R, Nei M. BOTTLENECK EFFECTS ON AVERAGE HETEROZYGOSITY AND GENETIC DISTANCE WITH THE STEPWISE MUTATION MODEL. Evolution; International Journal of Organic Evolution. 31: 347-356. PMID 28563234 DOI: 10.1111/j.1558-5646.1977.tb01017.x  0.344
1977 Nei M, Chakravarti A. Drift variances of FST and GST statistics obtained from a finite number of isolated populations. Theoretical Population Biology. 11: 307-25. PMID 877909 DOI: 10.1016/0040-5809(77)90014-4  0.516
1977 Nei M, Chakravarti A, Tateno Y. Mean and variance of FST in a finite number of incompletely isolated populations. Theoretical Population Biology. 11: 291-306. PMID 877908 DOI: 10.1016/0040-5809(77)90013-2  0.51
1977 Nei M. F-statistics and analysis of gene diversity in subdivided populations. Annals of Human Genetics. 41: 225-233. PMID 596830 DOI: 10.1111/J.1469-1809.1977.Tb01918.X  0.379
1976 Nei M, Chakraborty R, Fuerst PA. Infinite allele model with varying mutation rate. Proceedings of the National Academy of Sciences of the United States of America. 73: 4164-8. PMID 1069306 DOI: 10.1073/Pnas.73.11.4164  0.348
1976 Nei M, Li W. The transient distribution of allele frequencies under mutation pressure. Genetics Research. 28: 205-214. PMID 1026567 DOI: 10.1017/S0016672300016906  0.468
1976 Nei M, Chakraborty R. Electrophoretically silent alleles in a finite population Journal of Molecular Evolution. 8: 381-385. PMID 1011266 DOI: 10.1007/BF01739262  0.301
1976 Nei M, Fuerst PA, Chakraborty R. Testing the neutral mutation hypothesis by distribution of single locus heterozygosity. Nature. 262: 491-3. PMID 958402 DOI: 10.1038/262491a0  0.328
1976 Nei M, Chakraborty R. Empirical relationship between the number of nucleotide substitutions and interspecific identity of amino acid sequences in some proteins Journal of Molecular Evolution. 7: 313-323. PMID 180298 DOI: 10.1007/BF01743627  0.36
1975 Nei M, Li W. Probability of identical monomorphism in related species. Genetics Research. 26: 31-43. PMID 1218734 DOI: 10.1017/S0016672300015822  0.475
1975 Li W, Nei M. Drift variances of heterozygosity and genetic distance in transient states. Genetics Research. 25: 229-247. PMID 1183809 DOI: 10.1017/S0016672300015664  0.464
1975 Nei M, Tateno Y. Interlocus variation of genetic distance and the neutral mutation theory. Proceedings of the National Academy of Sciences of the United States of America. 72: 2758-2760. PMID 1058490 DOI: 10.1073/Pnas.72.7.2758  0.318
1974 Chakraborty R, Nei M. Dynamics of gene differentiation between incompletely isolated populations of unequal sizes Theoretical Population Biology. 5: 460-469. PMID 4460259 DOI: 10.1016/0040-5809(74)90064-1  0.374
1974 Li W, Nei M. Stable linkage disequilibrium without epistasis in subdivided populations Theoretical Population Biology. 6: 173-183. PMID 4445973 DOI: 10.1016/0040-5809(74)90022-7  0.516
1973 Nei M, Chakraborty R. Genetic distance and electrophoretic identity of proteins between taxa Journal of Molecular Evolution. 2: 323-328. PMID 4807198 DOI: 10.1007/BF01654100  0.309
1973 Nei M, Feldman MW. Identity of genes by descent within and between populations under mutation and migration pressures. Theoretical Population Biology. 3: 460-5. PMID 4667099 DOI: 10.1016/0040-5809(72)90017-2  0.354
1973 Nei M. Analysis of Gene Diversity in Subdivided Populations Proceedings of the National Academy of Sciences of the United States of America. 70: 3321-3323. PMID 4519626 DOI: 10.1073/Pnas.70.12.3321  0.447
1973 Kidwell MG, Kidwell JF, Nei M. A case of high rate of spontaneous mutation affecting viability in Drosophila melanogaster. Genetics. 75: 133-53. PMID 4202770  0.54
1973 Nei M, Roychoudhury AK. Probability of Fixation of Nonfunctional Genes at Duplicate Loci The American Naturalist. 107: 362-372. DOI: 10.1086/282840  0.466
1972 Nei M, Roychoudhury AK. Gene Differences between Caucasian, Negro, and Japanese Populations Science. 177: 434-436. PMID 5043144 DOI: 10.1126/Science.177.4047.434  0.429
1972 Nei M. Genetic Distance Between Populations The American Naturalist. 106: 283-292. DOI: 10.1086/282771  0.382
1971 Nei M. Extinction time of deleterious mutant genes in large populations. Theoretical Population Biology. 2: 419-425. PMID 5162695 DOI: 10.1016/0040-5809(71)90030-X  0.399
1971 Nei M. Interspecific Gene Differences and Evolutionary Time Estimated from Electrophoretic Data on Protein Identity The American Naturalist. 105: 385-398. DOI: 10.1086/282732  0.376
1970 Nei M. Accumulation of Nonfunctional Genes on Sheltered Chromosomes The American Naturalist. 104: 311-322. DOI: 10.1086/282665  0.367
1969 Nei M. Gene Duplication and Nucleotide Substitution in Evolution Nature. 221: 40-42. PMID 5782607 DOI: 10.1038/221040A0  0.436
1968 Nei M. Evolutionary change of linkage intensity. Nature. 218: 1160-1161. PMID 5656638 DOI: 10.1038/2181160A0  0.35
1967 Nei M, Kojima KI, Schaffer HE. Frequency changes of new inversions in populations under mutation-selection equilibria. Genetics. 57: 741-50. PMID 6082619  0.635
1966 Nei M, Imaizumi Y. Genetic structure of human populations 3. Differentiation of ABO blood group gene frequencies in small areas of Japan. Heredity. 21: 461-472. PMID 5230007 DOI: 10.1038/Hdy.1966.45  0.356
1966 Nei M, Imaizumi Y. Genetic structure of human populations. II. Differentiation of blood group gene frequencies among isolated populations. Heredity. 21: 183-190. PMID 5226957 DOI: 10.1038/Hdy.1966.17  0.347
1966 Nei M, Imaizumi Y. Genetic structure of human populations. I. Local differentiation of blood group gene frequencies in Japan. Heredity. 21: 9-35. PMID 5222523 DOI: 10.1038/Hdy.1966.2  0.35
1964 Nei M. Effects Of Linkage And Epistasis On The Equilibrium Frequencies Of Lethal Genes. Ii. Numerical Solutions The Japanese Journal of Genetics. 39: 7-25. DOI: 10.1266/Jjg.39.7  0.397
1964 NEI M. EFFECTS OF LINKAGE AND EPISTASIS ON THE EQUILIBRIUM FREQUENCIES OF LETHAL GENES. I. LINKAGE EQUILIBRIUM The Japanese Journal of Genetics. 39: 1-6. DOI: 10.1266/JJG.39.1  0.367
1958 Nei M, Syakudo K. The genetic variance and heritability in partially allogamous plant populations. Breeding Science. 7: 221-227. DOI: 10.1270/Jsbbs1951.7.221  0.301
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