Year |
Citation |
Score |
2018 |
Juergens H, Niemeijer M, Jennings-Antipov LD, Mans R, Morel J, van Maris AJA, Pronk JT, Gardner TS. Evaluation of a novel cloud-based software platform for structured experiment design and linked data analytics. Scientific Data. 5: 180195. PMID 30280721 DOI: 10.1038/Sdata.2018.195 |
0.355 |
|
2013 |
Gardner TS. Synthetic biology: from hype to impact. Trends in Biotechnology. 31: 123-5. PMID 23419209 DOI: 10.1016/J.Tibtech.2013.01.018 |
0.351 |
|
2012 |
Bansal M, Della Gatta G, Wierzbowski J, Gardner T, di Bernardo D. Discovering drug mode of action using reverse-engineered gene networks. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2005: 4739-42. PMID 17281300 DOI: 10.1109/IEMBS.2005.1615530 |
0.332 |
|
2010 |
Cosgrove EJ, Gardner TS, Kolaczyk ED. On the choice and number of microarrays for transcriptional regulatory network inference. Bmc Bioinformatics. 11: 454. PMID 20825684 DOI: 10.1186/1471-2105-11-454 |
0.777 |
|
2010 |
Thaden JT, Lory S, Gardner TS. Quorum-sensing regulation of a copper toxicity system in Pseudomonas aeruginosa. Journal of Bacteriology. 192: 2557-68. PMID 20233934 DOI: 10.1128/Jb.01528-09 |
0.655 |
|
2008 |
Cosgrove EJ, Zhou Y, Gardner TS, Kolaczyk ED. Predicting gene targets of perturbations via network-based filtering of mRNA expression compendia. Bioinformatics (Oxford, England). 24: 2482-90. PMID 18779235 DOI: 10.1093/Bioinformatics/Btn476 |
0.767 |
|
2008 |
Fredrickson JK, Romine MF, Beliaev AS, Auchtung JM, Driscoll ME, Gardner TS, Nealson KH, Osterman AL, Pinchuk G, Reed JL, Rodionov DA, Rodrigues JL, Saffarini DA, Serres MH, Spormann AM, et al. Towards environmental systems biology of Shewanella. Nature Reviews. Microbiology. 6: 592-603. PMID 18604222 DOI: 10.1038/Nrmicro1947 |
0.729 |
|
2008 |
Song W, Juhn FS, Naiman DQ, Konstantinidis KT, Gardner TS, Ward MJ. Predicting sigma28 promoters in eleven Shewanella genomes. Fems Microbiology Letters. 283: 223-30. PMID 18430000 DOI: 10.1111/J.1574-6968.2008.01175.X |
0.376 |
|
2008 |
Faith JJ, Driscoll ME, Fusaro VA, Cosgrove EJ, Hayete B, Juhn FS, Schneider SJ, Gardner TS. Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata. Nucleic Acids Research. 36: D866-70. PMID 17932051 DOI: 10.1093/Nar/Gkm815 |
0.635 |
|
2007 |
Driscoll ME, Romine MF, Juhn FS, Serres MH, McCue LA, Beliaev AS, Fredrickson JK, Gardner TS. Identification of diverse carbon utilization pathways in Shewanella oneidensis MR-1 via expression profiling. Genome Informatics. International Conference On Genome Informatics. 18: 287-98. PMID 18546496 DOI: 10.11234/Gi1990.18.287 |
0.738 |
|
2007 |
Faith JJ, Olson AJ, Gardner TS, Sachidanandam R. Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context. Bmc Bioinformatics. 8: 344. PMID 17877794 DOI: 10.1186/1471-2105-8-344 |
0.58 |
|
2007 |
Hayete B, Gardner TS, Collins JJ. Size matters: network inference tackles the genome scale. Molecular Systems Biology. 3: 77. PMID 17299414 DOI: 10.1038/Msb4100118 |
0.77 |
|
2007 |
Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, Kasif S, Collins JJ, Gardner TS. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. Plos Biology. 5: e8. PMID 17214507 DOI: 10.1371/Journal.Pbio.0050008 |
0.737 |
|
2007 |
Zhong Q, Boscolo R, Gardner TS, Roychowdhury VP. Inferring regulatory interactions between transcriptional factors and genes by propagating known regulatory links 2007 Ieee Symposium On Computational Intelligence and Bioinformatics and Computational Biology, Cibcb 2007. 205-211. |
0.367 |
|
2006 |
Xing H, Gardner TS. The mode-of-action by network identification (MNI) algorithm: a network biology approach for molecular target identification. Nature Protocols. 1: 2551-4. PMID 17406508 DOI: 10.1038/Nprot.2006.300 |
0.481 |
|
2006 |
Driscoll ME, Gardner TS. Identification and control of gene networks in living organisms via supervised and unsupervised learning Journal of Process Control. 16: 303-311. DOI: 10.1016/J.Jprocont.2005.06.010 |
0.765 |
|
2005 |
Gardner TS, Faith JJ. Reverse-engineering transcription control networks. Physics of Life Reviews. 2: 65-88. PMID 20416858 DOI: 10.1016/J.Plrev.2005.01.001 |
0.63 |
|
2005 |
di Bernardo D, Thompson MJ, Gardner TS, Chobot SE, Eastwood EL, Wojtovich AP, Elliott SJ, Schaus SE, Collins JJ. Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks. Nature Biotechnology. 23: 377-83. PMID 15765094 DOI: 10.1038/Nbt1075 |
0.541 |
|
2005 |
Bansal M, Della Gatta G, Wierzbowski J, Gardner T, Di Bernardo D. Discovering drug mode of action using reverse-engineered gene networks Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 7: 4739-4742. |
0.332 |
|
2004 |
Kobayashi H, Kaern M, Araki M, Chung K, Gardner TS, Cantor CR, Collins JJ. Programmable cells: interfacing natural and engineered gene networks. Proceedings of the National Academy of Sciences of the United States of America. 101: 8414-9. PMID 15159530 DOI: 10.1073/Pnas.0402940101 |
0.471 |
|
2004 |
Di Bernardo D, Gardner TS, Collins JJ. Robust identification of large genetic networks. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 486-97. PMID 14992527 |
0.524 |
|
2003 |
Gardner TS, di Bernardo D, Lorenz D, Collins JJ. Inferring genetic networks and identifying compound mode of action via expression profiling. Science (New York, N.Y.). 301: 102-5. PMID 12843395 DOI: 10.1126/Science.1081900 |
0.75 |
|
2000 |
Gardner TS, Collins JJ. Neutralizing noise in gene networks. Nature. 405: 520-1. PMID 10850696 DOI: 10.1038/35014708 |
0.482 |
|
2000 |
Gardner TS, Cantor CR, Collins JJ. Construction of a genetic toggle switch in Escherichia coli. Nature. 403: 339-42. PMID 10659857 DOI: 10.1038/35002131 |
0.518 |
|
1999 |
Dolnik M, Gardner TS, Epstein IR, Collins JJ. Frequency Control of an Oscillatory Reaction by Reversible Binding of an Autocatalyst Physical Review Letters. 82: 1582-1585. DOI: 10.1103/Physrevlett.82.1582 |
0.388 |
|
1998 |
Gardner TS, Dolnik M, Collins JJ. A theory for controlling cell cycle dynamics using a reversibly binding inhibitor. Proceedings of the National Academy of Sciences of the United States of America. 95: 14190-5. PMID 9826676 DOI: 10.1073/Pnas.95.24.14190 |
0.43 |
|
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