| Year |
Citation |
Score |
| 2019 |
Davis JJ, Wattam AR, Aziz RK, Brettin T, Butler R, Butler RM, Chlenski P, Conrad N, Dickerman A, Dietrich EM, Gabbard JL, Gerdes S, Guard A, Kenyon RW, Machi D, ... ... Olsen GJ, et al. The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. Nucleic Acids Research. PMID 31667520 DOI: 10.1093/Nar/Gkz943 |
0.342 |
|
| 2018 |
Zhang C, Phillips APR, Wipfler RL, Olsen GJ, Whitaker RJ. The essential genome of the crenarchaeal model Sulfolobus islandicus. Nature Communications. 9: 4908. PMID 30464174 DOI: 10.1038/S41467-018-07379-4 |
0.398 |
|
| 2017 |
Antonopoulos DA, Assaf R, Aziz RK, Brettin T, Bun C, Conrad N, Davis JJ, Dietrich EM, Disz T, Gerdes S, Kenyon RW, Machi D, Mao C, Murphy-Olson DE, Nordberg EK, ... Olsen GJ, et al. PATRIC as a unique resource for studying antimicrobial resistance. Briefings in Bioinformatics. PMID 28968762 DOI: 10.1093/Bib/Bbx083 |
0.444 |
|
| 2016 |
Wattam AR, Davis JJ, Assaf R, Boisvert S, Brettin T, Bun C, Conrad N, Dietrich EM, Disz T, Gabbard JL, Gerdes S, Henry CS, Kenyon RW, Machi D, Mao C, ... ... Olsen GJ, et al. Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center. Nucleic Acids Research. PMID 27899627 DOI: 10.1093/Nar/Gkw1017 |
0.413 |
|
| 2016 |
Davis JJ, Gerdes S, Olsen GJ, Olson R, Pusch GD, Shukla M, Vonstein V, Wattam AR, Yoo H. PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database. Frontiers in Microbiology. 7: 118. PMID 26903996 DOI: 10.3389/Fmicb.2016.00118 |
0.373 |
|
| 2015 |
Wetzel ME, Olsen GJ, Chakravartty V, Farrand SK. The repABC Plasmids with Quorum-Regulated Transfer Systems in Members of the Rhizobiales Divide into Two Structurally and Separately Evolving Groups. Genome Biology and Evolution. 7: 3337-57. PMID 26590210 DOI: 10.1093/Gbe/Evv227 |
0.331 |
|
| 2015 |
Matthews TD, Schmieder R, Silva GG, Busch J, Cassman N, Dutilh BE, Green D, Matlock B, Heffernan B, Olsen GJ, Farris Hanna L, Schifferli DM, Maloy S, Dinsdale EA, Edwards RA. Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and Gallinarum. Plos One. 10: e0126883. PMID 26039056 DOI: 10.1371/Journal.Pone.0126883 |
0.486 |
|
| 2015 |
Brettin T, Davis JJ, Disz T, Edwards RA, Gerdes S, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Shukla M, Thomason JA, Stevens R, Vonstein V, Wattam AR, et al. RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Scientific Reports. 5: 8365. PMID 25666585 DOI: 10.1038/Srep08365 |
0.459 |
|
| 2014 |
Davis JJ, Olsen GJ, Overbeek R, Vonstein V, Xia F. In search of genome annotation consistency: solid gene clusters and how to use them. 3 Biotech. 4: 331-335. PMID 28324432 DOI: 10.1007/s13205-013-0152-2 |
0.437 |
|
| 2014 |
Wetzel ME, Kim KS, Miller M, Olsen GJ, Farrand SK. Quorum-dependent mannopine-inducible conjugative transfer of an Agrobacterium opine-catabolic plasmid. Journal of Bacteriology. 196: 1031-44. PMID 24363349 DOI: 10.1128/Jb.01365-13 |
0.306 |
|
| 2014 |
Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, Edwards RA, Gerdes S, Parrello B, Shukla M, Vonstein V, Wattam AR, Xia F, Stevens R. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Research. 42: D206-14. PMID 24293654 DOI: 10.1093/Nar/Gkt1226 |
0.477 |
|
| 2013 |
Davis JJ, Xia F, Overbeek RA, Olsen GJ. Genomes of the class Erysipelotrichia clarify the firmicute origin of the class Mollicutes. International Journal of Systematic and Evolutionary Microbiology. 63: 2727-41. PMID 23606477 DOI: 10.1099/Ijs.0.048983-0 |
0.513 |
|
| 2012 |
Aziz RK, Devoid S, Disz T, Edwards RA, Henry CS, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Stevens RL, Vonstein V, Xia F. SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models. Plos One. 7: e48053. PMID 23110173 DOI: 10.1371/Journal.Pone.0048053 |
0.463 |
|
| 2011 |
Karberg KA, Olsen GJ, Davis JJ. Similarity of genes horizontally acquired by Escherichia coli and Salmonella enterica is evidence of a supraspecies pangenome. Proceedings of the National Academy of Sciences of the United States of America. 108: 20154-9. PMID 22128332 DOI: 10.1073/Pnas.1109451108 |
0.353 |
|
| 2011 |
Davis JJ, Olsen GJ. Characterizing the native codon usages of a genome: an axis projection approach. Molecular Biology and Evolution. 28: 211-21. PMID 20679093 DOI: 10.1093/Molbev/Msq185 |
0.446 |
|
| 2010 |
Davis JJ, Olsen GJ. Modal codon usage: assessing the typical codon usage of a genome. Molecular Biology and Evolution. 27: 800-10. PMID 20018979 DOI: 10.1093/Molbev/Msp281 |
0.461 |
|
| 2009 |
Zhang J, Olsen GJ. Messenger RNA processing in Methanocaldococcus (Methanococcus) jannaschii. Rna (New York, N.Y.). 15: 1909-16. PMID 19717546 DOI: 10.1261/Rna.1715209 |
0.374 |
|
| 2009 |
Zhang J, Li E, Olsen GJ. Protein-coding gene promoters in Methanocaldococcus (Methanococcus) jannaschii. Nucleic Acids Research. 37: 3588-601. PMID 19359364 DOI: 10.1093/Nar/Gkp213 |
0.644 |
|
| 2008 |
Li E, Reich CI, Olsen GJ. A whole-genome approach to identifying protein binding sites: promoters in Methanocaldococcus (Methanococcus) jannaschii. Nucleic Acids Research. 36: 6948-58. PMID 18981048 DOI: 10.1093/Nar/Gkm499 |
0.664 |
|
| 2008 |
Frank JA, Reich CI, Sharma S, Weisbaum JS, Wilson BA, Olsen GJ. Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes. Applied and Environmental Microbiology. 74: 2461-70. PMID 18296538 DOI: 10.1128/Aem.02272-07 |
0.38 |
|
| 2008 |
Anderson I, Rodriguez J, Susanti D, Porat I, Reich C, Ulrich LE, Elkins JG, Mavromatis K, Lykidis A, Kim E, Thompson LS, Nolan M, Land M, Copeland A, Lapidus A, ... ... Olsen GJ, et al. Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction. Journal of Bacteriology. 190: 2957-65. PMID 18263724 DOI: 10.1128/Jb.01949-07 |
0.426 |
|
| 2008 |
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, et al. The RAST Server: rapid annotations using subsystems technology. Bmc Genomics. 9: 75. PMID 18261238 DOI: 10.1186/1471-2164-9-75 |
0.718 |
|
| 2007 |
Morrison HG, McArthur AG, Gillin FD, Aley SB, Adam RD, Olsen GJ, Best AA, Cande WZ, Chen F, Cipriano MJ, Davids BJ, Dawson SC, Elmendorf HG, Hehl AB, Holder ME, et al. Genomic minimalism in the early diverging intestinal parasite Giardia lamblia. Science (New York, N.Y.). 317: 1921-6. PMID 17901334 DOI: 10.1126/Science.1143837 |
0.662 |
|
| 2007 |
McNeil LK, Reich C, Aziz RK, Bartels D, Cohoon M, Disz T, Edwards RA, Gerdes S, Hwang K, Kubal M, Margaryan GR, Meyer F, Mihalo W, Olsen GJ, Olson R, et al. The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. Nucleic Acids Research. 35: D347-53. PMID 17145713 DOI: 10.1093/Nar/Gkl947 |
0.735 |
|
| 2006 |
Qiao B, Goldberg TL, Olsen GJ, Weigel RM. A computer simulation analysis of the accuracy of partial genome sequencing and restriction fragment analysis in the reconstruction of phylogenetic relationships. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 6: 323-30. PMID 16406823 DOI: 10.1016/J.Meegid.2005.10.002 |
0.451 |
|
| 2005 |
Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M, de Crécy-Lagard V, Diaz N, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, ... ... Olsen G, et al. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Research. 33: 5691-702. PMID 16214803 DOI: 10.1093/Nar/Gki866 |
0.457 |
|
| 2004 |
Best AA, Morrison HG, McArthur AG, Sogin ML, Olsen GJ. Evolution of eukaryotic transcription: insights from the genome of Giardia lamblia. Genome Research. 14: 1537-47. PMID 15289474 DOI: 10.1101/Gr.2256604 |
0.61 |
|
| 2004 |
Zhu W, Reich CI, Olsen GJ, Giometti CS, Yates JR. Shotgun proteomics of Methanococcus jannaschii and insights into methanogenesis. Journal of Proteome Research. 3: 538-48. PMID 15253435 DOI: 10.1021/Pr034109S |
0.364 |
|
| 2002 |
Giometti CS, Reich C, Tollaksen S, Babnigg G, Lim H, Zhu W, Yates J, Olsen G. Global analysis of a "simple" proteome: Methanococcus jannaschii. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 782: 227-43. PMID 12458009 DOI: 10.1016/S1570-0232(02)00568-8 |
0.36 |
|
| 2002 |
Edwards RA, Olsen GJ, Maloy SR. Comparative genomics of closely related salmonellae. Trends in Microbiology. 10: 94-9. PMID 11827811 DOI: 10.1016/S0966-842X(01)02293-4 |
0.532 |
|
| 2002 |
Edwards RA, Olsen GJ, Maloy SR. The importance of complete genome sequences Trends in Microbiology. 10: 220. DOI: 10.1016/S0966-842X(02)02354-5 |
0.524 |
|
| 2001 |
McCloskey JA, Graham DE, Zhou S, Crain PF, Ibba M, Konisky J, Söll D, Olsen GJ. Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales. Nucleic Acids Research. 29: 4699-706. PMID 11713320 DOI: 10.1093/Nar/29.22.4699 |
0.559 |
|
| 2001 |
Reich CI, McNeil LK, Brace JL, Brucker JK, Olsen GJ. Archaeal RecA homologues: different response to DNA-damaging agents in mesophilic and thermophilic Archaea. Extremophiles : Life Under Extreme Conditions. 5: 265-75. PMID 11523896 DOI: 10.1007/S007920100197 |
0.646 |
|
| 2001 |
Best AA, Olsen GJ. Similar subunit architecture of archaeal and eukaryal RNA polymerases Fems Microbiology Letters. 195: 85-90. PMID 11167000 DOI: 10.1111/J.1574-6968.2001.Tb10502.X |
0.313 |
|
| 2001 |
Maidak BL, Cole JR, Lilburn TG, Parker CT, Saxman PR, Farris RJ, Garrity GM, Olsen GJ, Schmidt TM, Tiedje JM. The RDP-II (Ribosomal Database Project). Nucleic Acids Research. 29: 173-4. PMID 11125082 DOI: 10.1093/Nar/29.1.173 |
0.466 |
|
| 2001 |
Giometti CS, Tollaksen SL, Babnigg G, Reich CI, Olsen GJ, Lim H, Yates JR. Structural Modifications ofMethanococcus JannaschiiFlagellin Proteins Revealed by Proteome Analysis European Journal of Mass Spectrometry. 7: 207-217. DOI: 10.1002/1615-9861(200108)1:8<1033::Aid-Prot1033>3.0.Co;2-# |
0.344 |
|
| 2000 |
Bouzat JL, McNeil LK, Robertson HM, Solter LF, Nixon JE, Beever JE, Gaskins HR, Olsen G, Subramaniam S, Sogin ML, Lewin HA. Phylogenomic analysis of the alpha proteasome gene family from early-diverging eukaryotes. Journal of Molecular Evolution. 51: 532-43. PMID 11116327 DOI: 10.1007/S002390010117 |
0.71 |
|
| 2000 |
Woese CR, Olsen GJ, Ibba M, Söll D. Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process. Microbiology and Molecular Biology Reviews : Mmbr. 64: 202-36. PMID 10704480 DOI: 10.1128/Mmbr.64.1.202-236.2000 |
0.565 |
|
| 2000 |
Maidak BL, Cole JR, Lilburn TG, Parker CT, Saxman PR, Stredwick JM, Garrity GM, Li B, Olsen GJ, Pramanik S, Schmidt TM, Tiedje JM. The RDP (Ribosomal Database Project) continues. Nucleic Acids Research. 28: 173-4. PMID 10592216 DOI: 10.1093/Nar/28.1.173 |
0.466 |
|
| 2000 |
Graham DE, Overbeek R, Olsen GJ, Woese CR. An archaeal genomic signature Proceedings of the National Academy of Sciences. 97: 3304-3308. DOI: 10.1073/Pnas.97.7.3304 |
0.72 |
|
| 1999 |
Kyrpides NC, Olsen GJ. Archaeal and bacterial hyperthermophiles: horizontal gene exchange or common ancestry? Trends in Genetics : Tig. 15: 298-9. PMID 10431189 DOI: 10.1016/S0168-9525(99)01811-9 |
0.318 |
|
| 1999 |
Badger JH, Olsen GJ. CRITICA: coding region identification tool invoking comparative analysis. Molecular Biology and Evolution. 16: 512-24. PMID 10331277 DOI: 10.1093/Oxfordjournals.Molbev.A026133 |
0.435 |
|
| 1999 |
Haney PJ, Badger JH, Buldak GL, Reich CI, Woese CR, Olsen GJ. Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species. Proceedings of the National Academy of Sciences of the United States of America. 96: 3578-83. PMID 10097079 DOI: 10.1073/Pnas.96.7.3578 |
0.745 |
|
| 1999 |
Maidak BL, Cole JR, Parker CT, Garrity GM, Larsen N, Li B, Lilburn TG, McCaughey MJ, Olsen GJ, Overbeek R, Pramanik S, Schmidt TM, Tiedje JM, Woese CR. A new version of the RDP (Ribosomal Database Project). Nucleic Acids Research. 27: 171-3. PMID 9847171 DOI: 10.1093/Nar/27.1.171 |
0.642 |
|
| 1998 |
Deckert G, Warren PV, Gaasterland T, Young WG, Lenox AL, Graham DE, Overbeek R, Snead MA, Keller M, Aujay M, Huber R, Feldman RA, Short JM, Olsen GJ, Swanson RV. The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. Nature. 392: 353-8. PMID 9537320 DOI: 10.1038/32831 |
0.603 |
|
| 1998 |
Klenk H, Clayton RA, Tomb J, White O, Nelson KE, Ketchum KA, Dodson RJ, Gwinn M, Hickey EK, Peterson JD, Richardson DL, Kerlavage AR, Graham DE, Kyrpides NC, Fleischmann RD, ... ... Olsen GJ, et al. Erratum: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus Nature. 394: 101-101. DOI: 10.1038/27963 |
0.798 |
|
| 1997 |
Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA, Dodson RJ, Gwinn M, Hickey EK, Peterson JD, Richardson DL, Kerlavage AR, Graham DE, Kyrpides NC, Fleischmann RD, ... ... Olsen GJ, et al. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature. 390: 364-70. PMID 9389475 DOI: 10.1038/37052 |
0.799 |
|
| 1997 |
Selkov E, Maltsev N, Olsen GJ, Overbeek R, Whitman WB. A reconstruction of the metabolism of Methanococcus jannaschii from sequence data Gene. 197. PMID 9332394 DOI: 10.1016/S0378-1119(97)00307-7 |
0.424 |
|
| 1997 |
Olsen GJ, Woese CR. Archaeal genomics: an overview. Cell. 89: 991-4. PMID 9215619 DOI: 10.1016/S0092-8674(00)80284-6 |
0.655 |
|
| 1997 |
Perler FB, Olsen GJ, Adam E. Compilation and analysis of intein sequences. Nucleic Acids Research. 25: 1087-93. PMID 9092614 DOI: 10.1093/Nar/25.6.1087 |
0.492 |
|
| 1997 |
Maidak BL, Olsen GJ, Larsen N, Overbeek R, McCaughey MJ, Woese CR. The RDP (Ribosomal Database Project). Nucleic Acids Research. 25: 109-11. PMID 9016515 DOI: 10.1093/nar/25.1.109 |
0.598 |
|
| 1997 |
Jermiin LS, Olsen GJ, Mengerson KL, Easteal S. Majority-Rule Consensus of Phylogenetic Trees Obtained by Maximum-Likelihood Analysis Molecular Biology and Evolution. 14: 1296-1302. DOI: 10.1093/Oxfordjournals.Molbev.A025739 |
0.313 |
|
| 1996 |
Olsen GJ, Woese CR, White O, Venter JC. Response: methanococcus genome. Science (New York, N.Y.). 274: 902b-3b. PMID 17798603 DOI: 10.1126/Science.274.5289.902B |
0.588 |
|
| 1996 |
Olsen GJ, Woese CR. Lessons from an Archaeal genome: what are we learning from Methanococcus jannaschii? Trends in Genetics : Tig. 12: 377-9. PMID 8909123 DOI: 10.1016/0168-9525(96)30092-9 |
0.552 |
|
| 1996 |
Collart FR, Osipiuk J, Trent J, Olsen GJ, Huberman E. Cloning and characterization of the gene encoding IMP dehydrogenase from Arabidopsis thaliana. Gene. 174: 217-20. PMID 8890737 DOI: 10.1016/0378-1119(96)00045-5 |
0.445 |
|
| 1996 |
Collart FR, Osipiuk J, Trent J, Olsen GJ, Huberman E. Cloning, characterization and sequence comparison of the gene coding for IMP dehydrogenase from Pyrococcus furiosus. Gene. 174: 209-16. PMID 8890736 DOI: 10.1016/0378-1119(96)00044-3 |
0.472 |
|
| 1996 |
Bult CJ, White O, Olsen GJ, Zhou L, Fleischmann RD, Sutton GG, Blake JA, FitzGerald LM, Clayton RA, Gocayne JD, Kerlavage AR, Dougherty BA, Tomb JF, Adams MD, Reich CI, et al. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science (New York, N.Y.). 273: 1058-73. PMID 8688087 DOI: 10.1126/science.273.5278.1058 |
0.443 |
|
| 1996 |
Maidak BL, Olsen GJ, Larsen N, Overbeek R, McCaughey MJ, Woese CR. The Ribosomal Database Project (RDP). Nucleic Acids Research. 24: 82-5. PMID 8594608 DOI: 10.1093/Nar/24.1.82 |
0.629 |
|
| 1996 |
KYRPIDES NC, OLSEN GJ, KLENK H, WHITE O, WOESE CR. Methanococcus jannaschiiGenome: Revisited Genome Science and Technology. 1: 329-338. DOI: 10.1089/Mcg.1996.1.329 |
0.595 |
|
| 1994 |
Olsen GJ, Woese CR, Overbeek R. The winds of (evolutionary) change: breathing new life into microbiology. Journal of Bacteriology. 176: 1-6. PMID 8282683 DOI: 10.1128/Jb.176.1.1-6.1994 |
0.566 |
|
| 1994 |
Olsen GJ, Matsuda H, Hagstrom R, Overbeek R. FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood Bioinformatics. 10: 41-48. PMID 8193955 DOI: 10.1093/Bioinformatics/10.1.41 |
0.417 |
|
| 1994 |
Marsh TL, Reich CI, Whitelock RB, Olsen GJ. Transcription factor IID in the Archaea: Sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes Proceedings of the National Academy of Sciences of the United States of America. 91: 4180-4184. PMID 8183889 DOI: 10.1073/Pnas.91.10.4180 |
0.525 |
|
| 1994 |
Olsen GJ. Archaea, Archaea, every where Nature. 371: 657-658. PMID 7935810 DOI: 10.1038/371657A0 |
0.383 |
|
| 1994 |
Maidak BL, Larsen N, McCaughey MJ, Overbeek R, Olsen GJ, Fogel K, Blandy J, Woese CR. The Ribosomal Database Project. Nucleic Acids Research. 22: 3485-7. PMID 7524021 DOI: 10.1093/nar/22.17.3485 |
0.591 |
|
| 1993 |
Olsen GJ, Woese CR. Ribosomal RNA: a key to phylogeny. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 7: 113-23. PMID 8422957 DOI: 10.1096/Fasebj.7.1.8422957 |
0.6 |
|
| 1993 |
Larsen N, Olsen GJ, Maidak BL, McCaughey MJ, Overbeek R, Macke TJ, Marsh TL, Woese CR. The ribosomal database project. Nucleic Acids Research. 21: 3021-3. PMID 8332524 DOI: 10.1093/Nar/21.13.3021 |
0.597 |
|
| 1993 |
Duncan AJ, Carman RJ, Olsen GJ, Wilson KH. Assignment of the agent of Tyzzer's disease to Clostridium piliforme comb. nov. on the basis of 16S rRNA sequence analysis. International Journal of Systematic Bacteriology. 43: 314-8. PMID 7684241 DOI: 10.1099/00207713-43-2-314 |
0.433 |
|
| 1992 |
Burggraf S, Olsen GJ, Stetter KO, Woese CR. A phylogenetic analysis of Aquifex pyrophilus. Systematic and Applied Microbiology. 15: 352-6. PMID 11540077 DOI: 10.1016/S0723-2020(11)80207-9 |
0.612 |
|
| 1992 |
Lane DJ, Harrison AP, Stahl D, Pace B, Giovannoni SJ, Olsen GJ, Pace NR. Evolutionary relationships among sulfur- and iron-oxidizing eubacteria. Journal of Bacteriology. 174: 269-78. PMID 1729214 DOI: 10.1128/Jb.174.1.269-278.1992 |
0.323 |
|
| 1992 |
Olsen GJ, Overbeek R, Larsen N, Marsh TL, McCaughey MJ, Maciukenas MA, Kuan WM, Macke TJ, Xing Y, Woese CR. The Ribosomal Database Project. Nucleic Acids Research. 20: 2199-200. PMID 1598241 DOI: 10.1093/nar/20.suppl.2199 |
0.539 |
|
| 1992 |
Ballard JWO, Olsen GJ, Faith DP, Odgers WA, Rowell DM, Atkinson PW. Evidence from 12S ribosomal RNA sequences that onychophorans are modified arthropods Science. 258: 1345-1348. PMID 1455227 DOI: 10.1126/Science.1455227 |
0.396 |
|
| 1991 |
Olsen GJ, Larsen N, Woese CR. The ribosomal RNA database project. Nucleic Acids Research. 19: 2017-21. PMID 2041798 DOI: 10.1093/Nar/19.Suppl.2017 |
0.532 |
|
| 1991 |
Olsen GJ. Systematic underestimation of tree branch lengths by lake's operator metrics: An effect of position-dependent substitution rates Molecular Biology and Evolution. 8: 592-608. DOI: 10.1093/Oxfordjournals.Molbev.A040681 |
0.368 |
|
| 1991 |
Olsen G, Overbeek R, Larsen N, Woese C. The Ribosomal Database Project: updated description Nucleic Acids Research. 19: 4817-4817. DOI: 10.1093/Nar/19.17.4817 |
0.508 |
|
| 1990 |
Winker S, Overbeek R, Woese CR, Olsen GJ, Pfluger N. Structure detection through automated covariance search. Computer Applications in the Biosciences : Cabios. 6: 365-71. PMID 2257498 DOI: 10.1093/bioinformatics/6.4.365 |
0.524 |
|
| 1990 |
Kaufman TC, Seeger MA, Olsen G. Molecular and genetic organization of the antennapedia gene complex of Drosophila melanogaster. Advances in Genetics. 27: 309-62. PMID 1971986 DOI: 10.1016/S0065-2660(08)60029-2 |
0.336 |
|
| 1990 |
Holmes ML, Olsen GJ, Dyall-Smith ML. The halophilic archaebacteria Hb. lacusprofundi and Hb. saccharovorum are closely related: 16S rRNA sequence comparison. Nucleic Acids Research. 18: 4607. PMID 1697068 DOI: 10.1093/Nar/18.15.4607 |
0.438 |
|
| 1989 |
Olsen GJ, Woese CR. A brief note concerning archaebacterial phylogeny. Canadian Journal of Microbiology. 35: 119-23. PMID 2497936 DOI: 10.1139/M89-018 |
0.566 |
|
| 1989 |
James BD, Olsen GJ, Pace NR. Phylogenetic comparative analysis of RNA secondary structure Methods in Enzymology. 180: 227-239. PMID 2482415 DOI: 10.1016/0076-6879(89)80104-1 |
0.395 |
|
| 1989 |
Pace NR, Smith DK, Olsen GJ, James BD. Phylogenetic comparative analysis and the secondary structure of ribonuclease P RNA - a review Gene. 82: 65-75. PMID 2479592 DOI: 10.1016/0378-1119(89)90031-0 |
0.341 |
|
| 1988 |
Elwood HJ, Olsen GJ, Sogin ML. The small-subunit ribosomal RNA gene sequences from the hypotrichous ciliates Oxytricha nova and Stylonychia pustulata. Molecular Biology and Evolution. 2: 399-410. PMID 3939705 DOI: 10.1093/Oxfordjournals.Molbev.A040362 |
0.628 |
|
| 1988 |
Distel DL, Lane DJ, Olsen GJ, Giovannoni SJ, Pace B, Pace NR, Stahl DA, Felbeck H. Sulfur-oxidizing bacterial endosymbionts: analysis of phylogeny and specificity by 16S rRNA sequences Journal of Bacteriology. 170: 2506-2510. PMID 3286609 DOI: 10.1128/Jb.170.6.2506-2510.1988 |
0.427 |
|
| 1988 |
Field KG, Olsen GJ, Lane DJ, Giovannoni SJ, Ghiselin MT, Raff EC, Pace NR, Raff RA. Molecular phylogeny of the animal kingdom. Science (New York, N.Y.). 239: 748-53. PMID 3277277 DOI: 10.1126/Science.3277277 |
0.424 |
|
| 1988 |
Olsen GJ. [53] Phylogenetic analysis using ribosomal RNA Methods in Enzymology. 164: 793-812. PMID 3241556 DOI: 10.1016/S0076-6879(88)64084-5 |
0.506 |
|
| 1988 |
Giovannoni SJ, Turner S, Olsen GJ, Barns S, Lane DJ, Pace NR. Evolutionary relationships among cyanobacteria and green chloroplasts Journal of Bacteriology. 170: 3584-3592. PMID 3136142 DOI: 10.1128/Jb.170.8.3584-3592.1988 |
0.342 |
|
| 1988 |
Lane DJ, Field KG, Olsen GJ, Pace NR. [12] Reverse transcriptase sequencing of ribosomal RNA for phylogenetic analysis Methods in Enzymology. 167: 138-144. PMID 2467178 DOI: 10.1016/0076-6879(88)67015-7 |
0.439 |
|
| 1988 |
James BD, Olsen GJ, Liu J, Pace NR. The secondary structure of ribonuclease P RNA, the catalytic element of a ribonucleoprotein enzyme Cell. 52: 19-26. PMID 2449969 DOI: 10.1016/0092-8674(88)90527-2 |
0.4 |
|
| 1988 |
Giovannoni SJ, DeLong EF, Olsen GJ, Pace NR. Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells Journal of Bacteriology. 170: 720-726. PMID 2448289 DOI: 10.1128/Jb.170.2.720-726.1988 |
0.387 |
|
| 1987 |
Romaniuk PJ, Zoltowska B, Trust TJ, Lane DJ, Olsen GJ, Pace NR, Stahl DA. Campylobacter pylori, the spiral bacterium associated with human gastritis, is not a true Campylobacter sp Journal of Bacteriology. 169: 2137-2141. PMID 3571163 DOI: 10.1128/Jb.169.5.2137-2141.1987 |
0.307 |
|
| 1987 |
Olsen GJ. Earliest phylogenetic branchings: Comparing rRNA-based evolutionary trees inferred with various techniques Cold Spring Harbor Symposia On Quantitative Biology. 52: 825-837. PMID 3454291 DOI: 10.1101/Sqb.1987.052.01.090 |
0.326 |
|
| 1987 |
Stahl DA, Lane DJ, Olsen GJ, Heller DJ, Schmidt TM, Pace NR. Phylogenetic Analysis of Certain Sulfide-Oxidizing and Related Morphologically Conspicuous Bacteria by 5S Ribosomal Ribonucleic Acid Sequences International Journal of Systematic Bacteriology. 37: 116-122. DOI: 10.1099/00207713-37-2-116 |
0.399 |
|
| 1986 |
Woese CR, Olsen GJ. Archaebacterial phylogeny: perspectives on the urkingdoms Systematic and Applied Microbiology. 7: 161-177. PMID 11542063 DOI: 10.1016/S0723-2020(86)80001-7 |
0.609 |
|
| 1986 |
Pace NR, Olsen GJ, Woese CR. Ribosomal RNA phylogeny and the primary lines of evolutionary descent Cell. 45: 325-326. PMID 3084106 DOI: 10.1016/0092-8674(86)90315-6 |
0.523 |
|
| 1986 |
Olsen GJ, Lane DJ, Giovannoni SJ, Pace NR, Stahl DA. Microbial ecology and evolution: a ribosomal RNA approach. Annual Review of Microbiology. 40: 337-65. PMID 2430518 DOI: 10.1146/Annurev.Mi.40.100186.002005 |
0.328 |
|
| 1986 |
Woese CR, Pace NR, Olsen GJ. Are arguments against archaebacteria valid? Nature. 320: 401-402. DOI: 10.1038/320401B0 |
0.452 |
|
| 1986 |
Pace NR, Stahl DA, Lane DJ, Olsen GJ. The Analysis of Natural Microbial Populations by Ribosomal RNA Sequences Advances in Microbial Ecology. 9: 1-55. DOI: 10.1007/978-1-4757-0611-6_1 |
0.403 |
|
| 1985 |
Olsen GJ, Pace NR, Nuell M, Kaine BP, Gupta R, Woese CR. Sequence of the 16S rRNA gene from the thermoacidophilic archaebacterium Sulfolobus solfataricus and its evolutionary implications Journal of Molecular Evolution. 22: 301-307. PMID 3936935 DOI: 10.1007/Bf02115685 |
0.66 |
|
| 1985 |
Lane DJ, Stahl DA, Olsen GJ, Heller DJ, Pace NR. Phylogenetic analysis of the genera Thiobacillus and Thiomicrospira by 5S rRNA sequences. Journal of Bacteriology. 163: 75-81. PMID 3924899 DOI: 10.1128/Jb.163.1.75-81.1985 |
0.439 |
|
| 1985 |
Yang D, Oyaizu Y, Oyaizu H, Olsen GJ, Woese CR. Mitochondrial origins. Proceedings of the National Academy of Sciences of the United States of America. 82: 4443-7. PMID 3892535 DOI: 10.1073/pnas.82.13.4443 |
0.518 |
|
| 1985 |
Rogers MJ, Simmons J, Walker RT, Weisburg WG, Woese CR, Tanner RS, Robinson IM, Stahl DA, Olsen G, Leach RH. Construction of the mycoplasma evolutionary tree from 5S rRNA sequence data Proceedings of the National Academy of Sciences of the United States of America. 82: 1160-1164. PMID 2579388 DOI: 10.1073/Pnas.82.4.1160 |
0.665 |
|
| 1985 |
Lane DJ, Pace B, Olsen GJ, Stahl DA, Sogin ML, Pace NR. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proceedings of the National Academy of Sciences of the United States of America. 82: 6955-9. PMID 2413450 DOI: 10.1073/Pnas.82.20.6955 |
0.666 |
|
| 1985 |
Stahl DA, Lane DJ, Olsen GJ, Pace NR. Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences. Applied and Environmental Microbiology. 49: 1379-84. PMID 2409920 DOI: 10.1128/Aem.49.6.1379-1384.1985 |
0.433 |
|
| 1984 |
Stahl DA, Lane DJ, Olsen GJ, Pace NR. Analysis of hydrothermal vent-associated symbionts by ribosomal RNA sequences. Science (New York, N.Y.). 224: 409-11. PMID 17741220 DOI: 10.1126/Science.224.4647.409 |
0.48 |
|
| 1984 |
Olsen GJ, McCarroll R, Sogin ML. Secondary structure of the Dictyostelium discoideum small subunit ribosomal RNA. Nucleic Acids Research. 11: 8037-49. PMID 6359065 DOI: 10.1093/nar/11.22.8037 |
0.552 |
|
| 1983 |
McCarroll R, Olsen GJ, Stahl YD, Woese CR, Sogin ML. Nucleotide sequence of the Dictyostelium discoideum small-subunit ribosomal ribonucleic acid inferred from the gene sequence: evolutionary implications Biochemistry. 22: 5858-5868. DOI: 10.1021/Bi00294A027 |
0.725 |
|
| 1982 |
Olsen GJ, Sogin ML. Nucleotide sequence of Dictyostelium discoideum 5.8S ribosomal ribonucleic acid: evolutionary and secondary structural implications. Biochemistry. 21: 2335-43. PMID 7093192 DOI: 10.1021/Bi00539A010 |
0.638 |
|
| 1982 |
Walker TA, Johnson KD, Olsen GJ, Peters MA, Pace NR. Enzymatic and chemical structure mapping of mouse 28S ribosomal ribonucleic acid contacts in 5.8S ribosomal ribonucleic acid Biochemistry. 21: 2320-2329. PMID 7093191 DOI: 10.1021/Bi00539A008 |
0.329 |
|
| 1980 |
Sogin ML, Olsen GJ. Identification and mapping of a 60 bp EcoRI fragment in the Dictyostelium discoideum ribosomal DNA. Gene. 8: 231-8. PMID 6244213 DOI: 10.1016/0378-1119(80)90001-3 |
0.511 |
|
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