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Guy Perrière, Ph.D. - Publications

Affiliations: 
LBBE, UMR5558 LBBE, UMR5558, Université Lyon 1, Université de Lyon, Villeurbanne, Auvergne-Rhône-Alpes, France 
Area:
Microbial Evolution, Phylogenetics
Website:
http://lbbe.univ-lyon1.fr/-Perriere-Guy-.html?lang=en
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Monteil CL, Grouzdev DS, Perrière G, Alonso B, Rouy Z, Cruveiller S, Ginet N, Pignol D, Lefevre CT. Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria. The Isme Journal. PMID 32296121 DOI: 10.1038/s41396-020-0647-x  0.417
2018 Monteil CL, Perrière G, Menguy N, Ginet N, Alonso B, Waisbord N, Cruveiller S, Pignol D, Lefèvre CT. Genomic study of a novel magnetotactic Alphaproteobacteria uncovers the multiple ancestry of magnetotaxis. Environmental Microbiology. PMID 30043533 DOI: 10.1111/1462-2920.14364  0.471
2015 Fischer MJ, Rustenhloz C, Leh-Louis V, Perrière G. Molecular and functional evolution of the fungal diterpene synthase genes. Bmc Microbiology. 15: 221. PMID 26483054 DOI: 10.1186/s12866-015-0564-8  0.448
2015 Flandrois JP, Perrière G, Gouy M. leBIBIQBPP: a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences. Bmc Bioinformatics. 16: 251. PMID 26264559 DOI: 10.1186/S12859-015-0692-Z  0.802
2013 Bigot T, Daubin V, Lassalle F, Perrière G. TPMS: a set of utilities for querying collections of gene trees. Bmc Bioinformatics. 14: 109. PMID 23530580 DOI: 10.1186/1471-2105-14-109  0.718
2010 Arigon AM, Perrière G, Gouy M. Proposals for classification methods dedicated to biological data International Journal of Biomedical Engineering and Technology. 3: 4-21. DOI: 10.1504/Ijbet.2010.029649  0.792
2009 Penel S, Arigon AM, Dufayard JF, Sertier AS, Daubin V, Duret L, Gouy M, Perrière G. Databases of homologous gene families for comparative genomics. Bmc Bioinformatics. 10: S3. PMID 19534752 DOI: 10.1186/1471-2105-10-S6-S3  0.791
2008 Perrière G. Bioinformatics in the complete genome sequence era. Biochimie. 90: 553-4. PMID 18295605 DOI: 10.1016/j.biochi.2008.02.008  0.525
2008 Arigon AM, Perrière G, Gouy M. Automatic identification of large collections of protein-coding or rRNA sequences. Biochimie. 90: 609-14. PMID 17920750 DOI: 10.1016/J.Biochi.2007.08.006  0.808
2007 Fall S, Mercier A, Bertolla F, Calteau A, Gueguen L, Perrière G, Vogel TM, Simonet P. Horizontal gene transfer regulation in bacteria as a "spandrel" of DNA repair mechanisms. Plos One. 2: e1055. PMID 17957239 DOI: 10.1371/Journal.Pone.0001055  0.751
2006 Arigon AM, Perrière G, Gouy M. HoSeqI: automated homologous sequence identification in gene family databases. Bioinformatics (Oxford, England). 22: 1786-7. PMID 16682422 DOI: 10.1093/Bioinformatics/Btl179  0.794
2006 Grassot J, Gouy M, Perrière G, Mouchiroud G. Origin and molecular evolution of receptor tyrosine kinases with immunoglobulin-like domains. Molecular Biology and Evolution. 23: 1232-41. PMID 16551648 DOI: 10.1093/Molbev/Msk007  0.718
2005 Calteau A, Gouy M, Perrière G. Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea. Journal of Molecular Evolution. 60: 557-65. PMID 15983865 DOI: 10.1007/S00239-004-0094-8  0.781
2005 Ginolhac A, Jarrin C, Robe P, Perrière G, Vogel TM, Simonet P, Nalin R. Type I polyketide synthases may have evolved through horizontal gene transfer. Journal of Molecular Evolution. 60: 716-25. PMID 15909225 DOI: 10.1007/S00239-004-0161-1  0.312
2005 Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, Perrière G. Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases. Bioinformatics (Oxford, England). 21: 2596-603. PMID 15713731 DOI: 10.1093/Bioinformatics/Bti325  0.808
2005 Charif D, Thioulouse J, Lobry JR, Perrière G. Online synonymous codon usage analyses with the ade4 and seqinR packages. Bioinformatics (Oxford, England). 21: 545-7. PMID 15374859 DOI: 10.1093/bioinformatics/bti037  0.434
2004 Ginolhac A, Jarrin C, Gillet B, Robe P, Pujic P, Tuphile K, Bertrand H, Vogel TM, Perrière G, Simonet P, Nalin R. Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones. Applied and Environmental Microbiology. 70: 5522-7. PMID 15345440 DOI: 10.1128/Aem.70.9.5522-5527.2004  0.43
2004 Wuyts J, Perrière G, Van De Peer Y. The European ribosomal RNA database. Nucleic Acids Research. 32: D101-3. PMID 14681368 DOI: 10.1093/nar/gkh065  0.473
2003 Culhane AC, Perrière G, Higgins DG. Cross-platform comparison and visualisation of gene expression data using co-inertia analysis. Bmc Bioinformatics. 4: 59. PMID 14633289 DOI: 10.1186/1471-2105-4-59  0.353
2003 Daubin V, Lerat E, Perrière G. The source of laterally transferred genes in bacterial genomes. Genome Biology. 4: R57. PMID 12952536 DOI: 10.1186/Gb-2003-4-9-R57  0.758
2003 Devulder G, Perrière G, Baty F, Flandrois JP. BIBI, a bioinformatics bacterial identification tool. Journal of Clinical Microbiology. 41: 1785-7. PMID 12682188 DOI: 10.1128/JCM.41.4.1785-1787.2003  0.426
2003 Daubin V, Perrière G. G+C3 structuring along the genome: a common feature in prokaryotes. Molecular Biology and Evolution. 20: 471-83. PMID 12654929 DOI: 10.1093/Molbev/Msg022  0.736
2003 Grassot J, Mouchiroud G, Perrière G. RTKdb: database of Receptor Tyrosine Kinase. Nucleic Acids Research. 31: 353-8. PMID 12520021 DOI: 10.1093/nar/gkg036  0.319
2002 Daubin V, Gouy M, Perrière G. A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history. Genome Research. 12: 1080-90. PMID 12097345 DOI: 10.1101/Gr.187002  0.845
2002 Mougel C, Thioulouse J, Perrière G, Nesme X. A mathematical method for determining genome divergence and species delineation using AFLP. International Journal of Systematic and Evolutionary Microbiology. 52: 573-86. PMID 11931171 DOI: 10.1099/00207713-52-2-573  0.413
2002 Duarte J, Perrière G, Laudet V, Robinson-Rechavi M. NUREBASE: database of nuclear hormone receptors. Nucleic Acids Research. 30: 364-8. PMID 11752338 DOI: 10.1093/Nar/30.1.364  0.357
2001 Daubin V, Gouy M, Perrière G. Bacterial molecular phylogeny using supertree approach. Genome Informatics. International Conference On Genome Informatics. 12: 155-64. PMID 11791234 DOI: 10.11234/Gi1990.12.155  0.852
2001 Lavire C, Louis D, Perrière G, Briolay J, Normand P, Cournoyer B. Analysis of pFQ31, a 8551-bp cryptic plasmid from the symbiotic nitrogen-fixing actinomycete Frankia. Fems Microbiology Letters. 197: 111-6. PMID 11287155 DOI: 10.1016/S0378-1097(01)00095-7  0.389
2000 Perrière G, Duret L, Gouy M. HOBACGEN: database system for comparative genomics in bacteria. Genome Research. 10: 379-85. PMID 10720578 DOI: 10.1101/Gr.10.3.379  0.808
2000 Perrière G, Bessières P, Labedan B. EMGLib: the enhanced microbial genomes library (update 2000). Nucleic Acids Research. 28: 68-71. PMID 10592183  0.57
1999 Gonçalves I, Robinson M, Perrière G, Mouchiroud D. JaDis: computing distances between nucleic acid sequences. Bioinformatics (Oxford, England). 15: 424-5. PMID 10366663 DOI: 10.1093/Bioinformatics/15.5.424  0.422
1999 Perrière G, Bessières P, Labedan B. The Enhanced Microbial Genomes Library. Nucleic Acids Research. 27: 63-5. PMID 9847143 DOI: 10.1093/nar/27.1.63  0.607
1998 Perrière G, Gouy M, Gojobori T. The non-redundant Bacillus subtilis (NRSub) database: update 1998. Nucleic Acids Research. 26: 60-2. PMID 9399801 DOI: 10.1093/Nar/26.1.60  0.787
1997 Perrière G, Moszer I, Gojobori T. The NRSub database: update 1997. Nucleic Acids Research. 25: 53-6. PMID 9016504 DOI: 10.1093/nar/25.1.53  0.571
1996 Duret L, Gasteiger E, Perrière G. LALNVIEW: a graphical viewer for pairwise sequence alignments. Computer Applications in the Biosciences : Cabios. 12: 507-10. PMID 9021269 DOI: 10.1093/Bioinformatics/12.6.507  0.522
1996 Perrière G, Gouy M. WWW-query: an on-line retrieval system for biological sequence banks. Biochimie. 78: 364-9. PMID 8905155 DOI: 10.1016/0300-9084(96)84768-7  0.795
1996 Perrière G, Thioulouse J. On-line tools for sequence retrieval and multivariate statistics in molecular biology. Computer Applications in the Biosciences : Cabios. 12: 63-9. PMID 8670621  0.586
1996 Perrière G, Moszer I, Gojobori T. NRSub: a non-redundant database for Bacillus subtilis. Nucleic Acids Research. 24: 41-5. PMID 8594597 DOI: 10.1093/nar/24.1.41  0.567
1994 Perrière G, Gouy M, Gojobori T. NRSub: a non-redundant data base for the Bacillus subtilis genome. Nucleic Acids Research. 22: 5525-9. PMID 7838704 DOI: 10.1093/Nar/22.25.5525  0.77
1993 Perrière G, Gautier C. ColiGene: object-centered representation for the study of E coli gene expressivity by sequence analysis. Biochimie. 75: 415-22. PMID 8347728  0.462
1993 Perrière G, Dorkeld F, Rechenmann F, Gautier C. Object-oriented knowledge bases for the analysis of prokaryotic and eukaryotic genomes. Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 1: 319-27. PMID 7584353  0.424
1991 Cortay JC, Nègre D, Galinier A, Duclos B, Perrière G, Cozzone AJ. Regulation of the acetate operon in Escherichia coli: purification and functional characterization of the IclR repressor. The Embo Journal. 10: 675-9. PMID 2001680  0.322
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