| Year |
Citation |
Score |
| 2019 |
Techa-Angkoon P, Childs KL, Sun Y. GPRED-GC: a Gene PREDiction model accounting for 5 - 3 GC gradient. Bmc Bioinformatics. 20: 482. PMID 31874598 DOI: 10.1186/S12859-019-3047-3 |
0.373 |
|
| 2019 |
Guo J, Quensen JF, Sun Y, Wang Q, Brown CT, Cole JR, Tiedje JM. Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes. Frontiers in Genetics. 10: 957. PMID 31749830 DOI: 10.3389/Fgene.2019.00957 |
0.369 |
|
| 2019 |
Chen J, Shang J, Wang J, Sun Y. A binning tool to reconstruct viral haplotypes from assembled contigs. Bmc Bioinformatics. 20: 544. PMID 31684876 DOI: 10.1186/S12859-019-3138-1 |
0.337 |
|
| 2019 |
Chen J, Huang J, Sun Y. TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data. Bmc Bioinformatics. 20: 305. PMID 31164077 DOI: 10.1186/S12859-019-2878-2 |
0.316 |
|
| 2019 |
Du N, Chen J, Sun Y. Improving the sensitivity of long read overlap detection using grouped short k-mer matches. Bmc Genomics. 20: 190. PMID 30967123 DOI: 10.1186/S12864-019-5475-X |
0.354 |
|
| 2017 |
Techa-Angkoon P, Sun Y, Lei J. A sensitive short read homology search tool for paired-end read sequencing data. Bmc Bioinformatics. 18: 414. PMID 29072140 DOI: 10.1186/S12859-017-1826-2 |
0.381 |
|
| 2017 |
Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, ... ... Sun Y, et al. Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. Plos Genetics. 13: e1006802. PMID 28542203 DOI: 10.1371/journal.pgen.1006802 |
0.747 |
|
| 2016 |
Du N, Sun Y. Improve homology search sensitivity of PacBio data by correcting frameshifts. Bioinformatics (Oxford, England). 32: i529-i537. PMID 27587671 DOI: 10.7490/F1000Research.1112691.1 |
0.364 |
|
| 2016 |
Lei J, Sun Y. Assemble CRISPRs from metagenomic sequencing data. Bioinformatics (Oxford, England). 32: i520-i528. PMID 27587670 DOI: 10.1093/Bioinformatics/Btw456 |
0.337 |
|
| 2016 |
Ablikim M, Achasov MN, Ahmed S, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Bennett DW, Bennett JV, ... Sun YJ, ... Sun YZ, et al. Observation of an Anomalous Line Shape of the η^{'}π^{+}π^{-} Mass Spectrum near the pp[over ¯] Mass Threshold in J/ψ→γη^{'}π^{+}π^{-}. Physical Review Letters. 117: 042002. PMID 27494467 DOI: 10.1103/Physrevlett.117.042002 |
0.4 |
|
| 2016 |
Kirby LE, Sun Y, Judah D, Nowak S, Koslowsky D. Analysis of the Trypanosoma brucei EATRO 164 Bloodstream Guide RNA Transcriptome. Plos Neglected Tropical Diseases. 10: e0004793. PMID 27399202 DOI: 10.1371/Journal.Pntd.0004793 |
0.384 |
|
| 2016 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Bennett DW, Bennett JV, Bertani M, ... Sun YJ, ... Sun YZ, et al. Observation of h_{c} Radiative Decay h_{c}→γη^{'} and Evidence for h_{c}→γη. Physical Review Letters. 116: 251802. PMID 27391715 DOI: 10.1103/Physrevlett.116.251802 |
0.394 |
|
| 2016 |
Tang Z, Ma J, Zhang W, Gong C, He J, Wang Y, Yu G, Yuan C, Wang X, Sun Y, Ma J, Liu F, Zhao Y. The Role of Prion Protein Expression in Predicting Gastric Cancer Prognosis. Journal of Cancer. 7: 984-90. PMID 27313789 DOI: 10.7150/jca.14237 |
0.386 |
|
| 2016 |
Sun Y, Qi G, Lei X, Xu H, Li L, Yuan C, Wang Y. Distribution and mode of occurrence of uranium in bottom ash derived from high-germanium coals. Journal of Environmental Sciences (China). 43: 91-98. PMID 27155413 DOI: 10.1016/j.jes.2015.07.009 |
0.367 |
|
| 2016 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Sun YJ, ... ... Sun YZ, et al. Observation of the Singly Cabibbo-Suppressed Decay D^{+}→ωπ^{+} and Evidence for D^{0}→ωπ^{0}. Physical Review Letters. 116: 082001. PMID 26967411 DOI: 10.1103/Physrevlett.116.082001 |
0.407 |
|
| 2016 |
Zhang Y, Yuan C, Zhang Y, Sun Y, Chen H. Survival following segmentectomy or lobectomy in elderly patients with early-stage lung cancer. Oncotarget. PMID 26934652 DOI: 10.18632/oncotarget.7704 |
0.352 |
|
| 2016 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Sun YJ, ... ... Sun YZ, et al. Measurements of Absolute Hadronic Branching Fractions of the Λ_{c}^{+} Baryon. Physical Review Letters. 116: 052001. PMID 26894702 DOI: 10.1103/Physrevlett.116.052001 |
0.409 |
|
| 2016 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Ferroli RB, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Sun YJ, ... ... Sun YZ, et al. Measurement of Azimuthal Asymmetries in Inclusive Charged Dipion Production in e^{+}e^{-} Annihilations at sqrt[s]=3.65 GeV. Physical Review Letters. 116: 042001. PMID 26871323 DOI: 10.1103/PhysRevLett.116.042001 |
0.417 |
|
| 2015 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Ferroli RB, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Sun YJ, ... ... Sun YZ, et al. Observation of a Neutral Structure near the DD[over ¯]^{*} Mass Threshold in e^{+}e^{-}→(DD[over ¯]^{*})^{0}π^{0} at sqrt[s]=4.226 and 4.257 GeV. Physical Review Letters. 115: 222002. PMID 26650295 DOI: 10.1103/Physrevlett.115.222002 |
0.421 |
|
| 2015 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Sun YJ, ... ... Sun YZ, et al. Measurement of the Absolute Branching Fraction for Λ_{c}^{+}→Λe^{+}ν_{e}. Physical Review Letters. 115: 221805. PMID 26650293 DOI: 10.1103/Physrevlett.115.221805 |
0.419 |
|
| 2015 |
Wang JX, Sun P, Yuan CQ, Dai L, Zhang Y, Wu B, Long C, Sun YH, Li Y. Transcriptional profiles of emasculated flowers of black locust (Robinia pseudoacacia) determined using the cDNA-AFLP technique. Genetics and Molecular Research : Gmr. 14: 15822-38. PMID 26634550 DOI: 10.4238/2015.December.1.34 |
0.428 |
|
| 2015 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Ferroli RB, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Sun YJ, ... ... Sun YZ, et al. Observation of a Neutral Charmoniumlike State Z_{c}(4025)^{0} in e^{+}e^{-}→(D^{*}D[over ¯]^{*})^{0}π^{0}. Physical Review Letters. 115: 182002. PMID 26565461 DOI: 10.1103/Physrevlett.115.182002 |
0.42 |
|
| 2015 |
Wang JX, Lu C, Yuan CQ, Cui BB, Qiu QD, Sun P, Hu RY, Wu DC, Sun YH, Li Y. Characterization of ESTs from black locust for gene discovery and marker development. Genetics and Molecular Research : Gmr. 14: 12684-91. PMID 26505419 DOI: 10.4238/2015.October.19.12 |
0.515 |
|
| 2015 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Ferroli RB, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Sun YJ, ... ... Sun YZ, et al. Observation of Z_{c}(3900)^{0} in e^{+}e^{-}→π^{0}π^{0}J/ψ. Physical Review Letters. 115: 112003. PMID 26406823 DOI: 10.1103/Physrevlett.115.112003 |
0.422 |
|
| 2015 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Ferroli RB, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Sun YJ, ... ... Sun YZ, et al. Observation and Spin-Parity Determination of the X(1835) in J/ψ→γK_{S}^{0}K_{S}^{0}η. Physical Review Letters. 115: 091803. PMID 26371642 DOI: 10.1103/Physrevlett.115.091803 |
0.381 |
|
| 2015 |
Achawanantakun R, Chen J, Sun Y, Zhang Y. LncRNA-ID: Long non-coding RNA IDentification using balanced random forests. Bioinformatics (Oxford, England). PMID 26315901 DOI: 10.1093/Bioinformatics/Btv480 |
0.746 |
|
| 2015 |
Wang Q, Fish JA, Gilman M, Sun Y, Brown CT, Tiedje JM, Cole JR. Xander: employing a novel method for efficient gene-targeted metagenomic assembly. Microbiome. 3: 32. PMID 26246894 DOI: 10.1186/S40168-015-0093-6 |
0.345 |
|
| 2015 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Sun YJ, ... ... Sun YZ, et al. Observation of the ψ(1 3D2) State in e+e-→π+π-γχc1 at BESIII. Physical Review Letters. 115: 011803. PMID 26182091 DOI: 10.1103/Physrevlett.115.011803 |
0.409 |
|
| 2015 |
Yuan C, Lei J, Cole J, Sun Y. Reconstructing 16S rRNA genes in metagenomic data. Bioinformatics (Oxford, England). 31: i35-i43. PMID 26072503 DOI: 10.1093/Bioinformatics/Btv231 |
0.571 |
|
| 2015 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Ferroli RB, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Sun YJ, ... ... Sun YZ, et al. Study of e(+)e(-)→ωχ(cJ) at center of mass energies from 4.21 to 4.42 GeV. Physical Review Letters. 114: 092003. PMID 25793804 DOI: 10.1103/Physrevlett.114.092003 |
0.422 |
|
| 2015 |
Sun Y, Fu Z, He X, Yuan C, Ding X, Xia L. Enhancement of Bacillus thuringiensis insecticidal activity by combining Cry1Ac and bi-functional toxin HWTX-XI from spider. Journal of Invertebrate Pathology. PMID 25721170 DOI: 10.1016/j.jip.2015.02.005 |
0.401 |
|
| 2015 |
Law M, Childs KL, Campbell MS, Stein JC, Olson AJ, Holt C, Panchy N, Lei J, Jiao D, Andorf CM, Lawrence CJ, Ware D, Shiu SH, Sun Y, Jiang N, et al. Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes. Plant Physiology. 167: 25-39. PMID 25384563 DOI: 10.1104/Pp.114.245027 |
0.39 |
|
| 2014 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, Amoroso A, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Bennett DW, Bennett JV, Bertani M, ... ... Sun YJ, ... ... Sun YZ, et al. Observation of e(+)e(-)→π(0)π(0)hc and a neutral charmoniumlike structure Zc(4020)(0). Physical Review Letters. 113: 212002. PMID 25479489 DOI: 10.1103/Physrevlett.113.212002 |
0.43 |
|
| 2014 |
Zhang SL, Li H, He X, Zhang RQ, Sun YH, Zhang CF, Wang CZ, Yuan CS. Alkaloids from Mahonia bealei posses anti-Hâº/Kâº-ATPase and anti-gastrin effects on pyloric ligation-induced gastric ulcer in rats. Phytomedicine : International Journal of Phytotherapy and Phytopharmacology. 21: 1356-63. PMID 25172799 DOI: 10.1016/j.phymed.2014.07.007 |
0.36 |
|
| 2014 |
Zhang Y, Sun Y, Cole JR. A scalable and accurate targeted gene assembly tool (SAT-Assembler) for next-generation sequencing data. Plos Computational Biology. 10: e1003737. PMID 25122209 DOI: 10.1371/Journal.Pcbi.1003737 |
0.394 |
|
| 2014 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Albrecht M, Ambrose DJ, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Bennett JV, Bertani M, Bian JM, Boger E, ... ... Sun YJ, ... ... Sun YZ, et al. Observation of η'→π+ π π+ π- and η'→π+π- π0 π0. Physical Review Letters. 112: 251801. PMID 25014804 DOI: 10.1103/Physrevlett.112.251801 |
0.394 |
|
| 2014 |
Ablikim M, Achasov MN, Albayrak O, Ambrose DJ, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Becker J, Bennett JV, Bertani M, Bian JM, Boger E, Bondarenko O, ... ... Sun YJ, ... ... Sun YZ, et al. Observation of a charged charmoniumlike structure in e+ e- → (D* D*)± π∓ at √s = 4.26 GeV. Physical Review Letters. 112: 132001. PMID 24745407 DOI: 10.1103/Physrevlett.112.132001 |
0.413 |
|
| 2014 |
Yuan CQ, Sun YH, Li YF, Zhao KQ, Hu RY, Li Y. Selection occurs within linear fruit and during the early stages of reproduction in Robinia pseudoacacia. Bmc Evolutionary Biology. 14: 53. PMID 24655746 DOI: 10.1186/1471-2148-14-53 |
0.373 |
|
| 2014 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Ambrose DJ, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Bennett JV, Bertani M, Bian JM, Boger E, Bondarenko O, ... ... Sun YJ, ... ... Sun YZ, et al. Observation of e+e- → γX(3872) at BESIII. Physical Review Letters. 112: 092001. PMID 24655246 DOI: 10.1103/Physrevlett.112.092001 |
0.416 |
|
| 2014 |
Ablikim M, Achasov MN, Albayrak O, Ambrose DJ, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Becker J, Bennett JV, Bertani M, Bian JM, Boger E, Bondarenko O, ... ... Sun YJ, ... ... Sun YZ, et al. Observation of a charged (DD*)± mass peak in e+ e- → πDD* at sqrt[s] = 4.26 GeV. Physical Review Letters. 112: 022001. PMID 24484002 DOI: 10.1103/Physrevlett.112.022001 |
0.426 |
|
| 2014 |
Campbell MS, Law M, Holt C, Stein JC, Moghe GD, Hufnagel DE, Lei J, Achawanantakun R, Jiao D, Lawrence CJ, Ware D, Shiu SH, Childs KL, Sun Y, Jiang N, et al. MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations. Plant Physiology. 164: 513-24. PMID 24306534 DOI: 10.1104/Pp.113.230144 |
0.753 |
|
| 2014 |
Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, Sun Y, Brown CT, Porras-Alfaro A, Kuske CR, Tiedje JM. Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Research. 42: D633-42. PMID 24288368 DOI: 10.1093/Nar/Gkt1244 |
0.384 |
|
| 2014 |
Koslowsky D, Sun Y, Hindenach J, Theisen T, Lucas J. The insect-phase gRNA transcriptome in Trypanosoma brucei. Nucleic Acids Research. 42: 1873-86. PMID 24174546 DOI: 10.1093/Nar/Gkt973 |
0.363 |
|
| 2013 |
Ablikim M, Achasov MN, Albayrak O, Ambrose DJ, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Becker J, Bennett JV, Bertani M, Bian JM, Boger E, Bondarenko O, ... Sun YJ, ... Sun YZ, et al. Observation of a charged charmoniumlike structure Zc(4020) and search for the Zc(3900) in e+e-→π+π-hc. Physical Review Letters. 111: 242001. PMID 24483645 DOI: 10.1103/Physrevlett.111.242001 |
0.44 |
|
| 2013 |
Yuan CQ, Li YF, Wang L, Zhao KQ, Hu RY, Sun P, Sun YH, Li Y, Gu WX, Zhou ZY. Evidence for inbreeding depression in the tree Robinia pseudoacacia L. (Fabaceae). Genetics and Molecular Research : Gmr. 12: 6249-56. PMID 24338420 DOI: 10.4238/2013.December.4.12 |
0.374 |
|
| 2013 |
Yuan C, Sun Y. RNA-CODE: a noncoding RNA classification tool for short reads in NGS data lacking reference genomes. Plos One. 8: e77596. PMID 24204885 DOI: 10.1371/Journal.Pone.0077596 |
0.558 |
|
| 2013 |
Roy M, Kim N, Kim K, Chung WH, Achawanantakun R, Sun Y, Wayne R. Analysis of the canine brain transcriptome with an emphasis on the hypothalamus and cerebral cortex. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 24: 484-99. PMID 24202129 DOI: 10.1007/S00335-013-9480-0 |
0.751 |
|
| 2013 |
Fish JA, Chai B, Wang Q, Sun Y, Brown CT, Tiedje JM, Cole JR. FunGene: the functional gene pipeline and repository. Frontiers in Microbiology. 4: 291. PMID 24101916 DOI: 10.3389/Fmicb.2013.00291 |
0.391 |
|
| 2013 |
Sun Y, Lou X, Yang M, Yuan C, Ma L, Xie BK, Wu JM, Yang W, Shen SX, Xu N, Liao DJ. Cyclin-dependent kinase 4 may be expressed as multiple proteins and have functions that are independent of binding to CCND and RB and occur at the S and G 2/M phases of the cell cycle. Cell Cycle (Georgetown, Tex.). 12: 3512-25. PMID 24091631 DOI: 10.4161/cc.26510 |
0.39 |
|
| 2013 |
Tian T, Sun Y, Li M, He N, Yuan C, Yu S, Wang M, Ji C, Ma D. Increased Th22 cells as well as Th17 cells in patients with adult T-cell acute lymphoblastic leukemia. Clinica Chimica Acta; International Journal of Clinical Chemistry. 426: 108-13. PMID 24064425 DOI: 10.1016/j.cca.2013.09.014 |
0.358 |
|
| 2013 |
Wang Q, Quensen JF, Fish JA, Lee TK, Sun Y, Tiedje JM, Cole JR. Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool. Mbio. 4: e00592-13. PMID 24045641 DOI: 10.1128/Mbio.00592-13 |
0.369 |
|
| 2013 |
Sun P, Yuan C, Dai L, Xi Y, Li Y, Hu R, Sun Y, Xu Z, Li Y. Phytohormone and assimilate profiles in emasculated flowers of the black locust (Robinia pseudoacacia) during development. Acta Biologica Hungarica. 64: 364-76. PMID 24013897 DOI: 10.1556/ABiol.64.2013.3.9 |
0.391 |
|
| 2013 |
Lei J, Techa-Angkoon P, Sun Y. Chain-RNA: a comparative ncRNA search tool based on the two-dimensional chain algorithm. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 10: 274-85. PMID 23929857 DOI: 10.1109/Tcbb.2012.137 |
0.374 |
|
| 2013 |
Ablikim M, Achasov MN, Ai XC, Albayrak O, Ambrose DJ, An FF, An Q, Bai JZ, Baldini Ferroli R, Ban Y, Becker J, Bennett JV, Bertani M, Bian JM, Boger E, ... ... Sun YJ, ... ... Sun YZ, et al. Observation of a charged charmoniumlike structure in e+ e- → π+ π- J/ψ at sqrt[s] = 4.26 GeV. Physical Review Letters. 110: 252001. PMID 23829729 DOI: 10.1103/Physrevlett.110.252001 |
0.422 |
|
| 2013 |
Liu H, Bao F, Irwanto A, Fu X, Lu N, Yu G, Yu Y, Sun Y, Low H, Li Y, Liany H, Yuan C, Li J, Liu J, Chen M, et al. An association study of TOLL and CARD with leprosy susceptibility in Chinese population. Human Molecular Genetics. 22: 4430-7. PMID 23784377 DOI: 10.1093/Hmg/Ddt286 |
0.435 |
|
| 2013 |
Zhang Y, Sun Y, Cole JR. A Sensitive and Accurate protein domain cLassification Tool (SALT) for short reads. Bioinformatics (Oxford, England). 29: 2103-11. PMID 23782615 DOI: 10.1093/Bioinformatics/Btt357 |
0.361 |
|
| 2013 |
Achawanantakun R, Sun Y. Shape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVM. Bmc Bioinformatics. 14: S1. PMID 23369147 DOI: 10.1186/1471-2105-14-S2-S1 |
0.736 |
|
| 2013 |
Yuan C, Sun Y. Efficient known ncRNA search including pseudoknots. Bmc Bioinformatics. 14: S25. PMID 23369049 DOI: 10.1186/1471-2105-14-S2-S25 |
0.562 |
|
| 2012 |
Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, ... ... Sun Y, et al. Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779. Plos Genetics. 8: e1003064. PMID 23166516 DOI: 10.1371/Journal.Pgen.1003064 |
0.759 |
|
| 2012 |
Sun Y, Aljawad O, Lei J, Liu A. Genome-scale NCRNA homology search using a Hamming distance-based filtration strategy. Bmc Bioinformatics. 13: S12. PMID 22536896 DOI: 10.1186/1471-2105-13-S3-S12 |
0.388 |
|
| 2012 |
Sun Y, Buhler J, Yuan C. Designing filters for fast-known NcRNA identification. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 774-87. PMID 22084145 DOI: 10.1109/Tcbb.2011.149 |
0.66 |
|
| 2011 |
Zhang Y, Sun Y. HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors. Bmc Bioinformatics. 12: 198. PMID 21609463 DOI: 10.1186/1471-2105-12-198 |
0.337 |
|
| 2011 |
Achawanantakun R, Sun Y, Takyar SS. ncRNA consensus secondary structure derivation using grammar strings. Journal of Bioinformatics and Computational Biology. 9: 317-37. PMID 21523935 DOI: 10.1142/S0219720011005501 |
0.753 |
|
| 2009 |
Sun Y, Buhler J. Designing patterns and profiles for faster HMM search. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 6: 232-43. PMID 19407348 DOI: 10.1109/Tcbb.2008.14 |
0.578 |
|
| 2008 |
Sun Y, Buhler J. Designing secondary structure profiles for fast ncRNA identification. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 7: 145-56. PMID 19642276 |
0.586 |
|
| 2007 |
Sun Y, Buhler J. Designing patterns for profile HMM search. Bioinformatics (Oxford, England). 23: e36-43. PMID 17237102 DOI: 10.1093/Bioinformatics/Btl323 |
0.596 |
|
| 2006 |
Sun Y, Buhler J. Choosing the best heuristic for seeded alignment of DNA sequences. Bmc Bioinformatics. 7: 133. PMID 16533404 DOI: 10.1186/1471-2105-7-133 |
0.595 |
|
| 2005 |
Sun Y, Buhler J. Designing multiple simultaneous seeds for DNA similarity search. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 847-61. PMID 16108721 DOI: 10.1089/Cmb.2005.12.847 |
0.581 |
|
| 2005 |
Buhler J, Keich U, Sun Y. Designing seeds for similarity search in genomic DNA Journal of Computer and System Sciences. 70: 342-363. DOI: 10.1016/J.Jcss.2004.12.003 |
0.596 |
|
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