Steven D. Allison, Ph.D. - Publications

Affiliations: 
2005 Stanford University, Palo Alto, CA 
Area:
Ecology Biology, Biogeochemistry

75 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Alster CJ, von Fischer JC, Allison SD, Treseder KK. Embracing a new paradigm for temperature sensitivity of soil microbes. Global Change Biology. PMID 32097522 DOI: 10.1111/gcb.15053  0.4
2019 Malik AA, Martiny JBH, Brodie EL, Martiny AC, Treseder KK, Allison SD. Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change. The Isme Journal. PMID 31554911 DOI: 10.1038/s41396-019-0510-0  0.4
2019 Isobe K, Allison SD, Khalili B, Martiny AC, Martiny JBH. Phylogenetic conservation of bacterial responses to soil nitrogen addition across continents. Nature Communications. 10: 2499. PMID 31175309 DOI: 10.1038/s41467-019-10390-y  0.4
2018 Treseder KK, Berlemont R, Allison SD, Martiny AC. Drought increases the frequencies of fungal functional genes related to carbon and nitrogen acquisition. Plos One. 13: e0206441. PMID 30462680 DOI: 10.1371/journal.pone.0206441  0.4
2018 Glassman SI, Weihe C, Li J, Albright MBN, Looby CI, Martiny AC, Treseder KK, Allison SD, Martiny JBH. Decomposition responses to climate depend on microbial community composition. Proceedings of the National Academy of Sciences of the United States of America. PMID 30397146 DOI: 10.1073/pnas.1811269115  0.4
2018 Chase AB, Gomez-Lunar Z, Lopez AE, Li J, Allison SD, Martiny AC, Martiny JBH. Emergence of Soil Bacterial Ecotypes Along a Climate Gradient. Environmental Microbiology. PMID 30209883 DOI: 10.1111/1462-2920.14405  0.4
2018 Allison SD, Romero-Olivares AL, Lu Y, Taylor JW, Treseder KK. Temperature sensitivities of extracellular enzyme Vmax and Km across thermal environments. Global Change Biology. PMID 29322601 DOI: 10.1111/Gcb.14045  0.4
2017 Romero-Olivares AL, Allison SD, Treseder KK. Decomposition of recalcitrant carbon under experimental warming in boreal forest. Plos One. 12: e0179674. PMID 28622366 DOI: 10.1371/journal.pone.0179674  0.4
2016 Crowther TW, Todd-Brown KE, Rowe CW, Wieder WR, Carey JC, Machmuller MB, Snoek BL, Fang S, Zhou G, Allison SD, Blair JM, Bridgham SD, Burton AJ, Carrillo Y, Reich PB, et al. Quantifying global soil carbon losses in response to warming. Nature. 540: 104-108. PMID 27905442 DOI: 10.1038/Nature20150  0.4
2016 Martiny JB, Martiny AC, Weihe C, Lu Y, Berlemont R, Brodie EL, Goulden ML, Treseder KK, Allison SD. Microbial legacies alter decomposition in response to simulated global change. The Isme Journal. PMID 27740610 DOI: 10.1038/ismej.2016.122  0.96
2016 Amend AS, Martiny AC, Allison SD, Berlemont R, Goulden ML, Lu Y, Treseder KK, Weihe C, Martiny JB. Microbial response to simulated global change is phylogenetically conserved and linked with functional potential. The Isme Journal. 10: 109-18. PMID 26046258 DOI: 10.1038/ismej.2015.96  0.4
2016 Khalili B, Ogunseitan OA, Goulden ML, Allison SD. Interactive effects of precipitation manipulation and nitrogen addition on soil properties in California grassland and shrubland Applied Soil Ecology. 107: 144-153. DOI: 10.1016/j.apsoil.2016.05.018  0.96
2015 Baker NR, Allison SD. Ultraviolet photodegradation facilitates microbial litter decomposition in a Mediterranean climate. Ecology. 96: 1994-2003. PMID 26378321  0.96
2015 Powell JR, Welsh A, Hallin S. Microbial functional diversity enhances predictive models linking environmental parameters to ecosystem properties. Ecology. 96: 1985-93. PMID 26378320  0.96
2015 Hynson NA, Allison SD, Treseder KK. Quantum Dots Reveal Shifts in Organic Nitrogen Uptake by Fungi Exposed to Long-Term Nitrogen Enrichment. Plos One. 10: e0138158. PMID 26367868 DOI: 10.1371/Journal.Pone.0138158  0.4
2015 Matulich KL, Weihe C, Allison SD, Amend AS, Berlemont R, Goulden ML, Kimball S, Martiny AC, Martiny JB. Temporal variation overshadows the response of leaf litter microbial communities to simulated global change. The Isme Journal. 9: 2477-89. PMID 25978544 DOI: 10.1038/ismej.2015.58  0.4
2015 German DP, Allison SD. Drying and substrate concentrations interact to inhibit decomposition of carbon substrates added to combusted Inceptisols from a boreal forest Biology and Fertility of Soils. 51: 525-533. DOI: 10.1007/S00374-015-0998-Z  0.96
2015 Mouginot C, Zimmerman AE, Bonachela JA, Fredricks H, Allison SD, Van Mooy BAS, Martiny AC. Resource allocation by the marine cyanobacterium Synechococcus WH8102 in response to different nutrient supply ratios Limnology and Oceanography. 60: 1634-1641. DOI: 10.1002/lno.10123  0.4
2014 Berlemont R, Allison SD, Weihe C, Lu Y, Brodie EL, Martiny JB, Martiny AC. Cellulolytic potential under environmental changes in microbial communities from grassland litter. Frontiers in Microbiology. 5: 639. PMID 25505459 DOI: 10.3389/fmicb.2014.00639  0.4
2014 Allison SD. Modeling adaptation of carbon use efficiency in microbial communities. Frontiers in Microbiology. 5: 571. PMID 25389423 DOI: 10.3389/fmicb.2014.00571  0.96
2014 Allison SD, Lu L, Kent AG, Martiny AC. Extracellular enzyme production and cheating in Pseudomonas fluorescens depend on diffusion rates. Frontiers in Microbiology. 5: 169. PMID 24782855 DOI: 10.3389/fmicb.2014.00169  0.96
2014 Zimmerman AE, Allison SD, Martiny AC. Phylogenetic constraints on elemental stoichiometry and resource allocation in heterotrophic marine bacteria. Environmental Microbiology. 16: 1398-410. PMID 24237481 DOI: 10.1111/1462-2920.12329  0.4
2014 Zimmerman AE, Martiny AC, Lomas MW, Allison SD. Phosphate supply explains variation in nucleic acid allocation but not C: P stoichiometry in the western North Atlantic Biogeosciences. 11: 1599-1611. DOI: 10.5194/bg-11-1599-2014  0.96
2014 Hagerty SB, Van Groenigen KJ, Allison SD, Hungate BA, Schwartz E, Koch GW, Kolka RK, Dijkstra P. Accelerated microbial turnover but constant growth efficiency with warming in soil Nature Climate Change. 4: 903-906. DOI: 10.1038/nclimate2361  0.96
2014 Allison SD, Chacon SS, German DP. Substrate concentration constraints on microbial decomposition Soil Biology and Biochemistry. 79: 43-49. DOI: 10.1016/J.Soilbio.2014.08.021  0.96
2014 Mouginot C, Kawamura R, Matulich KL, Berlemont R, Allison SD, Amend AS, Martiny AC. Elemental stoichiometry of fungi and bacteria strains from grassland leaf litter Soil Biology and Biochemistry. 76: 278-285. DOI: 10.1016/j.soilbio.2014.05.011  0.96
2013 Aronson EL, Allison SD, Helliker BR. Environmental impacts on the diversity of methane-cycling microbes and their resultant function. Frontiers in Microbiology. 4: 225. PMID 23966984 DOI: 10.3389/Fmicb.2013.00225  0.96
2013 McGuire KL, Allison SD, Fierer N, Treseder KK. Ectomycorrhizal-dominated boreal and tropical forests have distinct fungal communities, but analogous spatial patterns across soil horizons. Plos One. 8: e68278. PMID 23874569 DOI: 10.1371/Journal.Pone.0068278  0.96
2013 Allison SD, Lu Y, Weihe C, Goulden ML, Martiny AC, Treseder KK, Martiny JB. Microbial abundance and composition influence litter decomposition response to environmental change. Ecology. 94: 714-25. PMID 23687897 DOI: 10.1890/12-1243.1  0.96
2013 Zimmerman AE, Martiny AC, Allison SD. Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes. The Isme Journal. 7: 1187-99. PMID 23303371 DOI: 10.1038/ismej.2012.176  0.96
2013 Bonachela JA, Allison SD, Martiny AC, Levin SA. A model for variable phytoplankton stoichiometry based on cell protein regulation Biogeosciences. 10: 4341-4356. DOI: 10.5194/Bg-10-4341-2013  0.96
2013 Wieder WR, Bonan GB, Allison SD. Global soil carbon projections are improved by modelling microbial processes Nature Climate Change. 3: 909-912. DOI: 10.1038/nclimate1951  0.96
2013 Bach CE, Warnock DD, Van Horn DJ, Weintraub MN, Sinsabaugh RL, Allison SD, German DP. Measuring phenol oxidase and peroxidase activities with pyrogallol, l-DOPA, and ABTS: Effect of assay conditions and soil type Soil Biology and Biochemistry. 67: 183-191. DOI: 10.1016/J.Soilbio.2013.08.022  0.96
2013 Alster CJ, German DP, Lu Y, Allison SD. Microbial enzymatic responses to drought and to nitrogen addition in a southern California grassland Soil Biology and Biochemistry. 64: 68-79. DOI: 10.1016/J.Soilbio.2013.03.034  0.96
2012 Shade A, Peter H, Allison SD, Baho DL, Berga M, Bürgmann H, Huber DH, Langenheder S, Lennon JT, Martiny JB, Matulich KL, Schmidt TM, Handelsman J. Fundamentals of microbial community resistance and resilience. Frontiers in Microbiology. 3: 417. PMID 23267351 DOI: 10.3389/fmicb.2012.00417  0.96
2012 Folse HJ, Allison SD. Cooperation, competition, and coalitions in enzyme-producing microbes: social evolution and nutrient depolymerization rates. Frontiers in Microbiology. 3: 338. PMID 23060866 DOI: 10.3389/fmicb.2012.00338  0.96
2012 Allison SD, Chao Y, Farrara JD, Hatosy S, Martiny AC. Fine-scale temporal variation in marine extracellular enzymes of coastal southern california. Frontiers in Microbiology. 3: 301. PMID 22912628 DOI: 10.3389/fmicb.2012.00301  0.96
2012 Aronson EL, Allison SD. Meta-analysis of environmental impacts on nitrous oxide release in response to N amendment. Frontiers in Microbiology. 3: 272. PMID 22866053 DOI: 10.3389/fmicb.2012.00272  0.96
2012 Allison SD. A trait-based approach for modelling microbial litter decomposition Ecology Letters. 15: 1058-1070. PMID 22642621 DOI: 10.1111/j.1461-0248.2012.01807.x  0.96
2012 German DP, Marcelo KRB, Stone MM, Allison SD. The Michaelis-Menten kinetics of soil extracellular enzymes in response to temperature: A cross-latitudinal study Global Change Biology. 18: 1468-1479. DOI: 10.1111/J.1365-2486.2011.02615.X  0.96
2012 Stone MM, Weiss MS, Goodale CL, Adams MB, Fernandez IJ, German DP, Allison SD. Temperature sensitivity of soil enzyme kinetics under N-fertilization in two temperate forests Global Change Biology. 18: 1173-1184. DOI: 10.1111/J.1365-2486.2011.02545.X  0.96
2012 German DP, Weintraub MN, Grandy AS, Lauber CL, Rinkes ZL, Allison SD. Response to Steen and Ziervogel's comment on " Optimization of hydrolytic and oxidative enzyme methods to ecosystem studies" [Soil Biology & Biochemistry 43: 1387-1397] Soil Biology and Biochemistry. 48: 198-199. DOI: 10.1016/J.Soilbio.2011.12.021  0.96
2012 German DP, Weintraub MN, Grandy AS, Lauber CL, Rinkes ZL, Allison SD. Corrigendum to "Optimization of hydrolytic and oxidative enzyme methods for ecosystem studies" [Soil Biol. Biochem. 43 (2011) 1387-1397] Soil Biology and Biochemistry. 44: 151. DOI: 10.1016/J.Soilbio.2011.11.002  0.96
2012 Todd-Brown KEO, Hopkins FM, Kivlin SN, Talbot JM, Allison SD. A framework for representing microbial decomposition in coupled climate models Biogeochemistry. 109: 19-33. DOI: 10.1007/s10533-011-9635-6  0.96
2011 German DP, Chacon SS, Allison SD. Substrate concentration and enzyme allocation can affect rates of microbial decomposition. Ecology. 92: 1471-80. PMID 21870621 DOI: 10.1890/10-2028.1  0.96
2011 Martiny JB, Eisen JA, Penn K, Allison SD, Horner-Devine MC. Drivers of bacterial beta-diversity depend on spatial scale. Proceedings of the National Academy of Sciences of the United States of America. 108: 7850-4. PMID 21518859 DOI: 10.1073/Pnas.1016308108  0.96
2011 German DP, Weintraub MN, Grandy AS, Lauber CL, Rinkes ZL, Allison SD. Optimization of hydrolytic and oxidative enzyme methods for ecosystem studies Soil Biology and Biochemistry. 43: 1387-1397. DOI: 10.1016/J.Soilbio.2011.03.017  0.96
2011 Allison SD, Treseder KK. Climate change feedbacks to microbial decomposition in boreal soils Fungal Ecology. 4: 362-374. DOI: 10.1016/j.funeco.2011.01.003  0.96
2010 McGuire KL, Bent E, Borneman J, Majumder A, Allison SD, Tresederi KK. Functional diversity in resource use by fungi. Ecology. 91: 2324-32. PMID 20836454 DOI: 10.1890/09-0654.1  0.96
2010 Allison SD, Wallenstein MD, Bradford MA. Soil-carbon response to warming dependent on microbial physiology Nature Geoscience. 3: 336-340. DOI: 10.1038/Ngeo846  0.96
2010 Allison SD, McGuire KL, Treseder KK. Resistance of microbial and soil properties to warming treatment seven years after boreal fire Soil Biology and Biochemistry. 42: 1872-1878. DOI: 10.1016/j.soilbio.2010.07.011  0.96
2010 Allison SD, Gartner TB, Mack MC, McGuire K, Treseder K. Nitrogen alters carbon dynamics during early succession in boreal forest Soil Biology and Biochemistry. 42: 1157-1164. DOI: 10.1016/j.soilbio.2010.03.026  0.96
2009 Bradford MA, Wallenstein MD, Allison SD, Treseder KK, Frey SD, Watts BW, Davies CA, Maddox TR, Melillo JM, Mohan JE, Reynolds JF. Decreased mass specific respiration under experimental warming is robust to the microbial biomass method employed Ecology Letters. 12: E15-E18. DOI: 10.1111/J.1461-0248.2009.01332.X  0.96
2009 Cornwell WK, Cornelissen JHC, Allison SD, Bauhus J, Eggleton P, Preston CM, Scarff F, Weedon JT, Wirth C, Zanne AE. Plant traits and wood fates across the globe: Rotted, burned, or consumed? Global Change Biology. 15: 2431-2449. DOI: 10.1111/j.1365-2486.2009.01916.x  0.96
2009 Allison SD, LeBauer DS, Ofrecio MR, Reyes R, Ta AM, Tran TM. Low levels of nitrogen addition stimulate decomposition by boreal forest fungi Soil Biology and Biochemistry. 41: 293-302. DOI: 10.1016/j.soilbio.2008.10.032  0.96
2008 Sinsabaugh RL, Lauber CL, Weintraub MN, Ahmed B, Allison SD, Crenshaw C, Contosta AR, Cusack D, Frey S, Gallo ME, Gartner TB, Hobbie SE, Holland K, Keeler BL, Powers JS, et al. Stoichiometry of soil enzyme activity at global scale. Ecology Letters. 11: 1252-64. PMID 18823393 DOI: 10.1111/J.1461-0248.2008.01245.X  0.96
2008 Allison SD, Martiny JB. Colloquium paper: resistance, resilience, and redundancy in microbial communities. Proceedings of the National Academy of Sciences of the United States of America. 105: 11512-9. PMID 18695234 DOI: 10.1073/pnas.0801925105  0.96
2008 Cornwell WK, Cornelissen JH, Amatangelo K, Dorrepaal E, Eviner VT, Godoy O, Hobbie SE, Hoorens B, Kurokawa H, Pérez-Harguindeguy N, Quested HM, Santiago LS, Wardle DA, Wright IJ, Aerts R, ... Allison SD, et al. Plant species traits are the predominant control on litter decomposition rates within biomes worldwide. Ecology Letters. 11: 1065-71. PMID 18627410 DOI: 10.1111/J.1461-0248.2008.01219.X  0.96
2008 Allison SD, Treseder KK. Warming and drying suppress microbial activity and carbon cycling in boreal forest soils Global Change Biology. 14: 2898-2909. DOI: 10.1111/j.1365-2486.2008.01716.x  0.96
2008 Allison SD, Czimczik CI, Treseder KK. Microbial activity and soil respiration under nitrogen addition in Alaskan boreal forest Global Change Biology. 14: 1156-1168. DOI: 10.1111/j.1365-2486.2008.01549.x  0.96
2008 Talbot JM, Allison SD, Treseder KK. Decomposers in disguise: Mycorrhizal fungi as regulators of soil C dynamics in ecosystems under global change Functional Ecology. 22: 955-963. DOI: 10.1111/j.1365-2435.2008.01402.x  0.96
2008 Treseder KK, Czimczik CI, Trumbore SE, Allison SD. Uptake of an amino acid by ectomycorrhizal fungi in a boreal forest Soil Biology and Biochemistry. 40: 1964-1966. DOI: 10.1016/j.soilbio.2008.02.010  0.96
2008 Hanson CA, Allison SD, Bradford MA, Wallenstein MD, Treseder KK. Fungal taxa target different carbon sources in forest soil Ecosystems. 11: 1157-1167. DOI: 10.1007/S10021-008-9186-4  0.96
2007 Allison SD, Hanson CA, Treseder KK. Nitrogen fertilization reduces diversity and alters community structure of active fungi in boreal ecosystems Soil Biology and Biochemistry. 39: 1878-1887. DOI: 10.1016/j.soilbio.2007.02.001  0.96
2006 Allison SD. Brown ground: a soil carbon analogue for the green world hypothesis? The American Naturalist. 167: 619-27. PMID 16671007 DOI: 10.1086/503443  0.96
2006 Allison SD, Jastrow JD. Activities of extracellular enzymes in physically isolated fractions of restored grassland soils Soil Biology and Biochemistry. 38: 3245-3256. DOI: 10.1016/J.Soilbio.2006.04.011  0.96
2006 Allison SD, Nielsen C, Hughes RF. Elevated enzyme activities in soils under the invasive nitrogen-fixing tree Falcataria moluccana Soil Biology and Biochemistry. 38: 1537-1544. DOI: 10.1016/j.soilbio.2005.11.008  0.96
2006 Allison SD. Soil minerals and humic acids alter enzyme stability: Implications for ecosystem processes Biogeochemistry. 81: 361-373. DOI: 10.1007/s10533-006-9046-2  0.96
2005 Allison SD, Schultz JC. Biochemical responses of chestnut oak to a galling cynipid. Journal of Chemical Ecology. 31: 151-66. PMID 15839487 DOI: 10.1007/s10886-005-0981-5  0.96
2005 Allison SD. Cheaters, diffusion and nutrients constrain decomposition by microbial enzymes in spatially structured environments Ecology Letters. 8: 626-635. DOI: 10.1111/j.1461-0248.2005.00756.x  0.96
2005 Allison SD, Vitousek PM. Responses of extracellular enzymes to simple and complex nutrient inputs Soil Biology and Biochemistry. 37: 937-944. DOI: 10.1016/j.soilbio.2004.09.014  0.96
2004 Allison SD, Vitousek PM. Rapid nutrient cycling in leaf litter from invasive plants in Hawai'i. Oecologia. 141: 612-9. PMID 15549401 DOI: 10.1007/s00442-004-1679-z  0.96
2004 Allison SD, Schultz JC. Differential activity of peroxidase isozymes in response to wounding, gypsy moth, and plant hormones in northern red oak (Quercus rubra L.). Journal of Chemical Ecology. 30: 1363-79. PMID 15503525 DOI: 10.1023/B:JOEC.0000037745.66972.3e  0.96
2004 Pauw A, Van Bael SA, Peters HA, Allison SD, Camargo JLC, Cifuentes-Jara M, Conserva A, Restom TG, Heartsill-Scalley T, Mangan SA, Nunez-Iturri G, Rivera-Ocasio E, Rountree M, Vetter S, De Castilho CV. Physical damage in relation to carbon allocation strategies of tropical forest tree saplings Biotropica. 36: 410-413. DOI: 10.1111/J.1744-7429.2004.Tb00334.X  0.96
2004 Allison SD, Vitousek PM. Extracellular enzyme activities and carbon chemistry as drivers of tropical plant litter decomposition Biotropica. 36: 285-296.  0.96
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