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Matthew Betts, PhD - Publications

Affiliations: 
Bioquant Ruprecht-Karls-University Heidelberg, Heidelberg, Baden-Württemberg, Germany 
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Betts MJ, Wichmann O, Utz M, Andre T, Petsalaki E, Minguez P, Parca L, Roth FP, Gavin AC, Bork P, Russell RB. Systematic identification of phosphorylation-mediated protein interaction switches. Plos Computational Biology. 13: e1005462. PMID 28346509 DOI: 10.1371/Journal.Pcbi.1005462  0.514
2016 Boldt K, van Reeuwijk J, Lu Q, Koutroumpas K, Nguyen TT, Texier Y, van Beersum SE, Horn N, Willer JR, Mans DA, Dougherty G, Lamers IJ, Coene KL, Arts HH, Betts MJ, et al. An organelle-specific protein landscape identifies novel diseases and molecular mechanisms. Nature Communications. 7: 11491. PMID 27173435 DOI: 10.1038/ncomms11491  0.536
2016 López C, Bergmann AK, Paul U, Murga Penas EM, Nagel I, Betts MJ, Johansson P, Ritgen M, Baumann T, Aymerich M, Jayne S, Russell RB, Campo E, Dyer MJ, Dürig J, et al. Genes encoding members of the JAK-STAT pathway or epigenetic regulators are recurrently mutated in T-cell prolymphocytic leukaemia. British Journal of Haematology. PMID 26917488 DOI: 10.1111/bjh.13952  0.525
2015 Kretzmer H, Bernhart SH, Wang W, Haake A, Weniger MA, Bergmann AK, Betts MJ, Carrillo-de-Santa-Pau E, Doose G, Gutwein J, Richter J, Hovestadt V, Huang B, Rico D, Jühling F, et al. DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control. Nature Genetics. PMID 26437030 DOI: 10.1038/Ng.3413  0.516
2015 Wagener R, Aukema SM, Schlesner M, Haake A, Burkhardt B, Claviez A, Drexler HG, Hummel M, Kreuz M, Loeffler M, Rosolowski M, López C, Möller P, Richter J, Rohde M, ... Betts MJ, et al. The PCBP1 gene encoding poly(rC) binding protein I is recurrently mutated in Burkitt lymphoma. Genes, Chromosomes & Cancer. 54: 555-64. PMID 26173642 DOI: 10.1002/gcc.22268  0.556
2015 Betts MJ, Lu Q, Jiang Y, Drusko A, Wichmann O, Utz M, Valtierra-Gutiérrez IA, Schlesner M, Jaeger N, Jones DT, Pfister S, Lichter P, Eils R, Siebert R, Bork P, et al. Mechismo: predicting the mechanistic impact of mutations and modifications on molecular interactions. Nucleic Acids Research. 43: e10. PMID 25392414 DOI: 10.1093/Nar/Gku1094  0.582
2015 Wagener R, Aukema SM, Schlesner M, Haake A, Burkhardt B, Claviez A, Drexler HG, Hummel M, Kreuz M, Loeffler M, Rosolowski M, López C, Möller P, Richter J, Rohde M, ... Betts MJ, et al. The PCBP1 gene encoding poly(rC) binding protein I is recurrently mutated in Burkitt lymphoma Genes Chromosomes and Cancer. 54: 555-564. DOI: 10.1002/gcc.22268  0.543
2014 Suratanee A, Schaefer MH, Betts MJ, Soons Z, Mannsperger H, Harder N, Oswald M, Gipp M, Ramminger E, Marcus G, Männer R, Rohr K, Wanker E, Russell RB, Andrade-Navarro MA, et al. Characterizing protein interactions employing a genome-wide siRNA cellular phenotyping screen. Plos Computational Biology. 10: e1003814. PMID 25255318 DOI: 10.1371/journal.pcbi.1003814  0.555
2014 Hasselblatt M, Nagel I, Oyen F, Bartelheim K, Russell RB, Schüller U, Junckerstorff R, Rosenblum M, Alassiri AH, Rossi S, Schmid I, Gottardo NG, Toledano H, Viscardi E, Balbin M, ... ... Betts MJ, et al. SMARCA4-mutated atypical teratoid/rhabdoid tumors are associated with inherited germline alterations and poor prognosis. Acta Neuropathologica. 128: 453-6. PMID 25060813 DOI: 10.1007/s00401-014-1323-x  0.492
2014 Rohde M, Richter J, Schlesner M, Betts MJ, Claviez A, Bonn BR, Zimmermann M, Damm-Welk C, Russell RB, Borkhardt A, Eils R, Hoell JI, Szczepanowski M, Oschlies I, Klapper W, et al. Recurrent RHOA mutations in pediatric Burkitt lymphoma treated according to the NHL-BFM protocols. Genes, Chromosomes & Cancer. 53: 911-6. PMID 25044415 DOI: 10.1002/gcc.22202  0.539
2014 Bergmann AK, Schneppenheim S, Seifert M, Betts MJ, Haake A, Lopez C, Maria Murga Penas E, Vater I, Jayne S, Dyer MJ, Schrappe M, Dührsen U, Ammerpohl O, Russell RB, Küppers R, et al. Recurrent mutation of JAK3 in T-cell prolymphocytic leukemia. Genes, Chromosomes & Cancer. 53: 309-16. PMID 24446122 DOI: 10.1002/gcc.22141  0.529
2013 Russell RB, Apic G, Kalinina O, Trabuco L, Betts MJ, Lu Q. Structural Systems Biology: Modeling Interactions and Networks for Systems Studies Computational Systems Biology: From Molecular Mechanisms to Disease: Second Edition. 9-19. DOI: 10.1016/B978-0-12-405926-9.00002-2  0.474
2012 Trabuco LG, Betts MJ, Russell RB. Negative protein-protein interaction datasets derived from large-scale two-hybrid experiments. Methods (San Diego, Calif.). 58: 343-8. PMID 22884951 DOI: 10.1016/J.Ymeth.2012.07.028  0.532
2012 Jones DT, Jäger N, Kool M, Zichner T, Hutter B, Sultan M, Cho YJ, Pugh TJ, Hovestadt V, Stütz AM, Rausch T, Warnatz HJ, Ryzhova M, Bender S, Sturm D, ... ... Betts MJ, et al. Dissecting the genomic complexity underlying medulloblastoma. Nature. 488: 100-5. PMID 22832583 DOI: 10.1038/Nature11284  0.528
2012 van Noort V, Seebacher J, Bader S, Mohammed S, Vonkova I, Betts MJ, Kühner S, Kumar R, Maier T, O'Flaherty M, Rybin V, Schmeisky A, Yus E, Stülke J, Serrano L, et al. Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium. Molecular Systems Biology. 8: 571. PMID 22373819 DOI: 10.1038/Msb.2012.4  0.536
2011 Apic G, Betts MJ, Russell RB. Content disputes in Wikipedia reflect geopolitical instability. Plos One. 6: e20902. PMID 21731630 DOI: 10.1371/journal.pone.0020902  0.463
2010 Gallego O, Betts MJ, Gvozdenovic-Jeremic J, Maeda K, Matetzki C, Aguilar-Gurrieri C, Beltran-Alvarez P, Bonn S, Fernández-Tornero C, Jensen LJ, Kuhn M, Trott J, Rybin V, Müller CW, Bork P, et al. A systematic screen for protein-lipid interactions in Saccharomyces cerevisiae. Molecular Systems Biology. 6: 430. PMID 21119626 DOI: 10.1038/Msb.2010.87  0.52
2009 Kühner S, van Noort V, Betts MJ, Leo-Macias A, Batisse C, Rode M, Yamada T, Maier T, Bader S, Beltran-Alvarez P, Castaño-Diez D, Chen WH, Devos D, Güell M, Norambuena T, et al. Proteome organization in a genome-reduced bacterium. Science (New York, N.Y.). 326: 1235-40. PMID 19965468 DOI: 10.1126/Science.1176343  0.512
2009 Betts MJ, Russell RB. A more structured metabolome. Nature Structural & Molecular Biology. 16: 1125-6. PMID 19888310 DOI: 10.1038/nsmb1109-1125  0.452
2007 Betts MJ, Russell RB. The hard cell: from proteomics to a whole cell model. Febs Letters. 581: 2870-6. PMID 17555749 DOI: 10.1016/j.febslet.2007.05.062  0.518
2007 Moelleken J, Malsam J, Betts MJ, Movafeghi A, Reckmann I, Meissner I, Hellwig A, Russell RB, Söllner T, Brügger B, Wieland FT. Differential localization of coatomer complex isoforms within the Golgi apparatus. Proceedings of the National Academy of Sciences of the United States of America. 104: 4425-30. PMID 17360540 DOI: 10.1073/pnas.0611360104  0.49
2007 Betts MJ, Russell RB. Amino-Acid Properties and Consequences of Substitutions Bioinformatics For Geneticists: a Bioinformatics Primer For the Analysis of Genetic Data: Second Edition. 311-342. DOI: 10.1002/9780470059180.ch13  0.437
2002 Bonfield JK, Beal KF, Betts MJ, Staden R. Trev: a DNA trace editor and viewer. Bioinformatics (Oxford, England). 18: 194-5. PMID 11836229 DOI: 10.1093/Bioinformatics/18.1.194  0.52
2001 Betts MJ, Guigó R, Agarwal P, Russell RB. Exon structure conservation despite low sequence similarity: a relic of dramatic events in evolution? The Embo Journal. 20: 5354-60. PMID 11574467 DOI: 10.1093/Emboj/20.19.5354  0.533
1999 Betts MJ, Sternberg MJ. An analysis of conformational changes on protein-protein association: implications for predictive docking. Protein Engineering. 12: 271-83. PMID 10325397  0.468
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