Mary FIRESTONE, Ph.D. - Publications

University of California, Berkeley, Berkeley, CA 
Microbial Ecology

132 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Ceja-Navarro JA, Wang Y, Ning D, Arellano A, Ramanculova L, Yuan MM, Byer A, Craven KD, Saha MC, Brodie EL, Pett-Ridge J, Firestone MK. Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop. Microbiome. 9: 96. PMID 33910643 DOI: 10.1186/s40168-021-01042-9  1
2021 Hungate BA, Marks JC, Power ME, Schwartz E, van Groenigen KJ, Blazewicz SJ, Chuckran P, Dijkstra P, Finley BK, Firestone MK, Foley M, Greenlon A, Hayer M, Hofmockel KS, Koch BJ, et al. The Functional Significance of Bacterial Predators. Mbio. 12. PMID 33906922 DOI: 10.1128/mBio.00466-21  1
2021 Yuan MM, Kakouridis A, Starr E, Nguyen N, Shi S, Pett-Ridge J, Nuccio E, Zhou J, Firestone M. Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches. Mbio. 12. PMID 33879589 DOI: 10.1128/mBio.03509-20  1
2021 Guzman A, Montes M, Hutchins L, DeLaCerda G, Yang P, Kakouridis A, Dahlquist-Willard R, Firestone M, Bowles T, Kremen C. Crop diversity enriches arbuscular mycorrhizal fungal communities in an intensive agricultural landscape. The New Phytologist. PMID 33638170 DOI: 10.1111/nph.17306  0.4
2020 Ning D, Yuan M, Wu L, Zhang Y, Guo X, Zhou X, Yang Y, Arkin AP, Firestone MK, Zhou J. A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming. Nature Communications. 11: 4717. PMID 32948774 DOI: 10.1038/S41467-020-18560-Z  0.4
2020 Sieradzki ET, Koch BJ, Greenlon A, Sachdeva R, Malmstrom RR, Mau RL, Blazewicz SJ, Firestone MK, Hofmockel KS, Schwartz E, Hungate BA, Pett-Ridge J. Measurement Error and Resolution in Quantitative Stable Isotope Probing: Implications for Experimental Design. Msystems. 5. PMID 32694124 DOI: 10.1128/mSystems.00151-20  1
2020 Blazewicz SJ, Hungate BA, Koch BJ, Nuccio EE, Morrissey E, Brodie EL, Schwartz E, Pett-Ridge J, Firestone MK. Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil. The Isme Journal. PMID 32203117 DOI: 10.1038/S41396-020-0617-3  1
2020 Nuccio EE, Starr E, Karaoz U, Brodie EL, Zhou J, Tringe SG, Malmstrom RR, Woyke T, Banfield JF, Firestone MK, Pett-Ridge J. Niche differentiation is spatially and temporally regulated in the rhizosphere. The Isme Journal. PMID 31953507 DOI: 10.1038/S41396-019-0582-X  1
2020 Sher Y, Baker NR, Herman D, Fossum C, Hale L, Zhang X, Nuccio E, Saha M, Zhou J, Pett-Ridge J, Firestone M. Corrigendum to “Microbial extracellular polysaccharide production and aggregate stability controlled by Switchgrass (Panicum virgatum) root biomass and soil water potential” [Soil Biology and Biochemistry 143 (2020) 107741] Soil Biology & Biochemistry. 148: 107907. DOI: 10.1016/J.Soilbio.2020.107907  1
2019 Starr EP, Nuccio EE, Pett-Ridge J, Banfield JF, Firestone MK. Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil. Proceedings of the National Academy of Sciences of the United States of America. PMID 31772013 DOI: 10.1073/Pnas.1908291116  1
2019 Escalas A, Hale L, Voordeckers JW, Yang Y, Firestone MK, Alvarez-Cohen L, Zhou J. Microbial functional diversity: From concepts to applications. Ecology and Evolution. 9: 12000-12016. PMID 31695904 DOI: 10.1002/Ece3.5670  0.4
2018 Whitman T, Neurath R, Perera A, Chu-Jacoby I, Ning D, Zhou J, Nico P, Pett-Ridge J, Firestone M. Microbial community assembly differs across minerals in a rhizosphere microcosm. Environmental Microbiology. PMID 30047192 DOI: 10.1111/1462-2920.14366  1
2018 Starr EP, Shi S, Blazewicz SJ, Probst AJ, Herman DJ, Firestone MK, Banfield JF. Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon. Microbiome. 6: 122. PMID 29970182 DOI: 10.1186/S40168-018-0499-Z  0.84
2018 Zhalnina K, Louie KB, Hao Z, Mansoori N, da Rocha UN, Shi S, Cho H, Karaoz U, Loqué D, Bowen BP, Firestone MK, Northen TR, Brodie EL. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nature Microbiology. PMID 29556109 DOI: 10.1038/S41564-018-0129-3  0.68
2016 Nuccio EE, Anderson-Furgeson J, Estera KY, Pett-Ridge J, De Valpine P, Brodie EL, Firestone MK. Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass. Ecology. 97: 1307-18. PMID 27349106  1
2016 Shi S, Nuccio EE, Shi ZJ, He Z, Zhou J, Firestone MK. The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages. Ecology Letters. PMID 27264635 DOI: 10.1111/Ele.12630  1
2015 Shi S, Nuccio E, Herman DJ, Rijkers R, Estera K, Li J, da Rocha UN, He Z, Pett-Ridge J, Brodie EL, Zhou J, Firestone M. Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons. Mbio. 6. PMID 26242625 DOI: 10.1128/Mbio.00746-15  1
2015 Templer PH, Weathers KC, Ewing HA, Dawson TE, Mambelli S, Lindsey AM, Webb J, Boukili VK, Firestone MK. Fog as a source of nitrogen for redwood trees: Evidence from fluxes and stable isotopes Journal of Ecology. 103: 1397-1407. DOI: 10.1111/1365-2745.12462  0.44
2014 Blazewicz SJ, Schwartz E, Firestone MK. Growth and death of bacteria and fungi underlie rainfall-induced carbon dioxide pulses from seasonally dried soil. Ecology. 95: 1162-72. PMID 25000748 DOI: 10.1890/13-1031.1  1
2014 Zhu B, Gutknecht JLM, Herman DJ, Keck DC, Firestone MK, Cheng W. Rhizosphere priming effects on soil carbon and nitrogen mineralization Soil Biology and Biochemistry. 76: 183-192. DOI: 10.1016/J.Soilbio.2014.04.033  1
2014 Throckmorton HM, Bird JA, Monte N, Doane T, Firestone MK, Horwath WR. The soil matrix increases microbial C stabilization in temperate and tropical forest soils Biogeochemistry. 122: 35-45. DOI: 10.1007/s10533-014-0027-6  1
2013 Doll HM, Armitage DW, Daly RA, Emerson JB, Goltsman DS, Yelton AP, Kerekes J, Firestone MK, Potts MD. Utilizing novel diversity estimators to quantify multiple dimensions of microbial biodiversity across domains. Bmc Microbiology. 13: 259. PMID 24238386 DOI: 10.1186/1471-2180-13-259  1
2013 Blazewicz SJ, Barnard RL, Daly RA, Firestone MK. Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses. The Isme Journal. 7: 2061-8. PMID 23823491 DOI: 10.1038/Ismej.2013.102  1
2013 Barnard RL, Osborne CA, Firestone MK. Responses of soil bacterial and fungal communities to extreme desiccation and rewetting. The Isme Journal. 7: 2229-41. PMID 23823489 DOI: 10.1038/ismej.2013.104  1
2013 Pett-Ridge J, Petersen DG, Nuccio E, Firestone MK. Influence of oxic/anoxic fluctuations on ammonia oxidizers and nitrification potential in a wet tropical soil. Fems Microbiology Ecology. 85: 179-94. PMID 23556538 DOI: 10.1111/1574-6941.12111  1
2013 Placella SA, Firestone MK. Transcriptional response of nitrifying communities to wetting of dry soil. Applied and Environmental Microbiology. 79: 3294-302. PMID 23524666 DOI: 10.1128/AEM.00404-13  1
2013 Nuccio EE, Hodge A, Pett-Ridge J, Herman DJ, Weber PK, Firestone MK. An arbuscular mycorrhizal fungus significantly modifies the soil bacterial community and nitrogen cycling during litter decomposition. Environmental Microbiology. 15: 1870-81. PMID 23360621 DOI: 10.1111/1462-2920.12081  1
2013 Shi S, Richardson AE, O'Callaghan M, Firestone M, Condron L. Challenges in Assessing Links Between Root Exudates and the Structure and Function of Soil Microbial Communities Molecular Microbial Ecology of the Rhizosphere. 1: 125-135. DOI: 10.1002/9781118297674.ch11  1
2012 Throckmorton HM, Bird JA, Dane L, Firestone MK, Horwath WR. The source of microbial C has little impact on soil organic matter stabilisation in forest ecosystems. Ecology Letters. 15: 1257-65. PMID 22897121 DOI: 10.1111/J.1461-0248.2012.01848.X  1
2012 Placella SA, Brodie EL, Firestone MK. Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups. Proceedings of the National Academy of Sciences of the United States of America. 109: 10931-6. PMID 22715291 DOI: 10.1073/pnas.1204306109  1
2012 DeAngelis KM, Firestone MK. Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes. Applied and Environmental Microbiology. 78: 2459-61. PMID 22286992 DOI: 10.1128/Aem.07547-11  1
2012 Petersen DG, Blazewicz SJ, Firestone M, Herman DJ, Turetsky M, Waldrop M. Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska. Environmental Microbiology. 14: 993-1008. PMID 22225623 DOI: 10.1111/J.1462-2920.2011.02679.X  1
2012 Herman DJ, Firestone MK, Nuccio E, Hodge A. Interactions between an arbuscular mycorrhizal fungus and a soil microbial community mediating litter decomposition. Fems Microbiology Ecology. 80: 236-47. PMID 22224699 DOI: 10.1111/j.1574-6941.2011.01292.x  1
2012 Blazewicz SJ, Petersen DG, Waldrop MP, Firestone MK. Anaerobic oxidation of methane in tropical and boreal soils: Ecological significance in terrestrial methane cycling Journal of Geophysical Research: Biogeosciences. 117. DOI: 10.1029/2011Jg001864  1
2011 Brodie EL, Joyner DC, Faybishenko B, Conrad ME, Rios-Velazquez C, Malave J, Martinez R, Mork B, Willett A, Koenigsberg S, Herman DJ, Firestone MK, Hazen TC. Microbial community response to addition of polylactate compounds to stimulate hexavalent chromium reduction in groundwater. Chemosphere. 85: 660-5. PMID 21872904 DOI: 10.1016/J.Chemosphere.2011.07.021  1
2011 Wang JM, Firestone MK, Beissinger SR. Microbial and environmental effects on avian egg viability: do tropical mechanisms act in a temperate environment? Ecology. 92: 1137-45. PMID 21661574 DOI: 10.1890/10-0986.1  1
2011 Shi S, Richardson AE, O'Callaghan M, DeAngelis KM, Jones EE, Stewart A, Firestone MK, Condron LM. Effects of selected root exudate components on soil bacterial communities. Fems Microbiology Ecology. 77: 600-10. PMID 21658090 DOI: 10.1111/J.1574-6941.2011.01150.X  1
2011 Cusack DF, Silver WL, Torn MS, Burton SD, Firestone MK. Changes in microbial community characteristics and soil organic matter with nitrogen additions in two tropical forests. Ecology. 92: 621-32. PMID 21608471 DOI: 10.1890/10-0459.1  1
2011 Silver WL, Thompson AW, Herman DJ, Firestone MK. Is there evidence for limitations to nitrogen mineralization in upper montane tropical forests? Tropical Montane Cloud Forests: Science For Conservation and Management. 418-427. DOI: 10.1017/CBO9780511778384.047  1
2011 Bird JA, Herman DJ, Firestone MK. Rhizosphere priming of soil organic matter by bacterial groups in a grassland soil Soil Biology and Biochemistry. 43: 718-725. DOI: 10.1016/j.soilbio.2010.08.010  1
2010 Dubinsky EA, Silver WL, Firestone MK. Tropical forest soil microbial communities couple iron and carbon biogeochemistry. Ecology. 91: 2604-12. PMID 20957955 DOI: 10.1890/09-1365.1  1
2010 DeAngelis KM, Silver WL, Thompson AW, Firestone MK. Microbial communities acclimate to recurring changes in soil redox potential status. Environmental Microbiology. 12: 3137-49. PMID 20629704 DOI: 10.1111/J.1462-2920.2010.02286.X  1
2009 Shawkey MD, Firestone MK, Brodie EL, Beissinger SR. Avian incubation inhibits growth and diversification of bacterial assemblages on eggs. Plos One. 4: e4522. PMID 19225566 DOI: 10.1371/Journal.Pone.0004522  1
2009 DeAngelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK. Selective progressive response of soil microbial community to wild oat roots. The Isme Journal. 3: 168-78. PMID 19005498 DOI: 10.1038/Ismej.2008.103  1
2009 Ewing HA, Weathers KC, Templer PH, Dawson TE, Firestone MK, Elliott AM, Boukili VKS. Fog water and ecosystem function: Heterogeneity in a California redwood forest Ecosystems. 12: 417-433. DOI: 10.1007/s10021-009-9232-x  1
2008 Templer PH, Silver WL, Pett-Ridge J, M DeAngelis K, Firestone MK. PLANT AND MICROBIAL CONTROLS ON NITROGEN RETENTION AND LOSS IN A HUMID TROPICAL FOREST. Ecology. 89: 3030-3040. PMID 31766805 DOI: 10.1890/07-1631.1  1
2008 Tokunaga TK, Wan J, Kim Y, Daly RA, Brodie EL, Hazen TC, Herman D, Firestone MK. Influences of organic carbon supply rate on uranium bioreduction in initially oxidizing, contaminated sediment. Environmental Science & Technology. 42: 8901-7. PMID 19192816 DOI: 10.1021/Es8019947  1
2008 Faybishenko B, Hazen TC, Long PE, Brodie EL, Conrad ME, Hubbard SS, Christensen JN, Joyner D, Borglin SE, Chakraborty R, Williams KH, Peterson JE, Chen J, Brown ST, Tokunaga TK, ... ... Firestone M, et al. In situ long-term reductive bioimmobilization of Cr(VI) in groundwater using hydrogen release compound. Environmental Science & Technology. 42: 8478-85. PMID 19068835 DOI: 10.1021/Es801383R  1
2008 Wan J, Tokunaga TK, Kim Y, Brodie E, Daly R, Hazen TC, Firestone MK. Effects of organic carbon supply rates on uranium mobility in a previously bioreduced contaminated sediment. Environmental Science & Technology. 42: 7573-9. PMID 18983077 DOI: 10.1021/Es800951H  1
2008 DeAngelis KM, Lindow SE, Firestone MK. Bacterial quorum sensing and nitrogen cycling in rhizosphere soil. Fems Microbiology Ecology. 66: 197-207. PMID 18721146 DOI: 10.1111/J.1574-6941.2008.00550.X  1
2008 Templer PH, Silver WL, Pett-Ridge J, DeAngelis KM, Firestone MK. Plant and microbial controls on nitrogen retention and loss in a humid tropical forest Ecology. 89: 3030-3040. DOI: 10.1890/07-1631.1  1
2007 Prosser JI, Bohannan BJ, Curtis TP, Ellis RJ, Firestone MK, Freckleton RP, Green JL, Green LE, Killham K, Lennon JJ, Osborn AM, Solan M, van der Gast CJ, Young JP. The role of ecological theory in microbial ecology. Nature Reviews. Microbiology. 5: 384-92. PMID 17435792 DOI: 10.1038/nrmicro1643  1
2007 DeAngelis KM, Firestone MK, Lindow SE. Sensitive whole-cell biosensor suitable for detecting a variety of N-acyl homoserine lactones in intact rhizosphere microbial communities. Applied and Environmental Microbiology. 73: 3724-7. PMID 17400771 DOI: 10.1128/Aem.02187-06  1
2007 Hawkes CV, DeAngelis KM, Firestone MK. Root Interactions with Soil Microbial Communities and Processes The Rhizosphere. 1-29. DOI: 10.1016/B978-012088775-0/50003-3  1
2006 Wallenstein MD, Myrold DD, Firestone M, Voytek M. Environmental controls on denitrifying communities and denitrification rates: insights from molecular methods. Ecological Applications : a Publication of the Ecological Society of America. 16: 2143-52. PMID 17205893 DOI: 10.1890/1051-0761(2006)016[2143:Ecodca]2.0.Co;2  1
2006 Groffman PM, Altabet MA, Böhlke JK, Butterbach-Bahl K, David MB, Firestone MK, Giblin AE, Kana TM, Nielsen LP, Voytek MA. Methods for measuring denitrification: diverse approaches to a difficult problem. Ecological Applications : a Publication of the Ecological Society of America. 16: 2091-122. PMID 17205891 DOI: 10.1890/1051-0761(2006)016[2091:Mfmdda]2.0.Co;2  1
2006 Waldrop MP, Firestone MK. Response of microbial community composition and function to soil climate change. Microbial Ecology. 52: 716-24. PMID 17061172 DOI: 10.1007/S00248-006-9103-3  1
2006 Brodie EL, Desantis TZ, Joyner DC, Baek SM, Larsen JT, Andersen GL, Hazen TC, Richardson PM, Herman DJ, Tokunaga TK, Wan JM, Firestone MK. Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Applied and Environmental Microbiology. 72: 6288-98. PMID 16957256 DOI: 10.1128/Aem.00246-06  1
2006 Waldrop MP, Firestone MK. Seasonal dynamics of microbial community composition and function in oak canopy and open grassland soils. Microbial Ecology. 52: 470-9. PMID 16909344 DOI: 10.1007/S00248-006-9100-6  1
2006 Herman DJ, Johnson KK, Jaeger CH, Schwartz E, Firestone MK. Root influence on nitrogen mineralization and nitrification in avena barbata rhizosphere soil Soil Science Society of America Journal. 70: 1504-1511. DOI: 10.2136/Sssaj2005.0113  1
2006 Hawkes CV, Belnap J, D'Antonio C, Firestone MK. Arbuscular mycorrhizal assemblages in native plant roots change in the presence of invasive exotic grasses Plant and Soil. 281: 369-380. DOI: 10.1007/S11104-005-4826-3  1
2006 Pett-Ridge J, Silver WL, Firestone MK. Redox fluctuations frame microbial community impacts on N-cycling rates in a humid tropical forest soil Biogeochemistry. 81: 95-110. DOI: 10.1007/S10533-006-9032-8  1
2005 DeAngelis KM, Ji P, Firestone MK, Lindow SE. Two novel bacterial biosensors for detection of nitrate availability in the rhizosphere. Applied and Environmental Microbiology. 71: 8537-47. PMID 16332845 DOI: 10.1128/Aem.71.12.8537-8547.2005  1
2005 Pett-Ridge J, Firestone MK. Redox fluctuation structures microbial communities in a wet tropical soil. Applied and Environmental Microbiology. 71: 6998-7007. PMID 16269735 DOI: 10.1128/Aem.71.11.6998-7007.2005  1
2005 Tokunaga TK, Wan J, Pena J, Brodie EL, Firestone MK, Hazen TC, Sutton SR, Lanzirotti A, Newville M. Uranium reduction in sediments under diffusion-limited transport of organic carbon. Environmental Science & Technology. 39: 7077-83. PMID 16201631 DOI: 10.1021/Es050221A  1
2005 Wan J, Tokunaga TK, Brodie E, Wang Z, Zheng Z, Herman D, Hazen TC, Firestone MK, Sutton SR. Reoxidation of bioreduced uranium under reducing conditions. Environmental Science & Technology. 39: 6162-9. PMID 16173577 DOI: 10.1021/Es048236G  1
2005 Silver WL, Thompson AW, Reich A, Ewel JJ, Firestone MK. Nitrogen cycling in tropical plantation forests: Potential controls on nitrogen retention Ecological Applications. 15: 1604-1614. DOI: 10.1890/04-1322  1
2005 Hawkes CV, Wren IF, Herman DJ, Firestone MK. Plant invasion alters nitrogen cycling by modifying the soil nitrifying community Ecology Letters. 8: 976-985. DOI: 10.1111/J.1461-0248.2005.00802.X  1
2005 Hu S, Wu J, Burkey KO, Firestone MK. Plant and microbial N acquisition under elevated atmospheric CO2 in two mesocosm experiments with annual grasses Global Change Biology. 11: 213-223. DOI: 10.1111/j.1365-2486.2005.00905.x  1
2005 Balser TC, Firestone MK. Linking microbial community composition and soil processes in a California annual grassland and mixed-conifer forest Biogeochemistry. 73: 395-415. DOI: 10.1007/S10533-004-0372-Y  1
2004 Waldrop MP, Firestone MK. Microbial community utilization of recalcitrant and simple carbon compounds: impact of oak-woodland plant communities. Oecologia. 138: 275-84. PMID 14614618 DOI: 10.1007/S00442-003-1419-9  1
2004 Waldrop MP, Firestone MK. Altered utilization patterns of young and old soil C by microorganisms caused by temperature shifts and N additions Biogeochemistry. 67: 235-248. DOI: 10.1023/B:Biog.0000015321.51462.41  1
2003 Tokunaga TK, Wan J, Firestone MK, Hazen TC, Olson KR, Herman DJ, Sutton SR, Lanzirotti A. In situ reduction of chromium(VI) in heavily contaminated soils through organic carbon amendment. Journal of Environmental Quality. 32: 1641-9. PMID 14535304 DOI: 10.2134/Jeq2003.1641  1
2003 Tokunaga TK, Wan J, Hazen TC, Schwartz E, Firestone MK, Sutton SR, Newville M, Olson KR, Lanzirotti A, Rao W. Distribution of chromium contamination and microbial activity in soil aggregates. Journal of Environmental Quality. 32: 541-9. PMID 12708678 DOI: 10.2134/Jeq2003.5410  1
2003 Belnap J, Hawkes CV, Firestone MK. Boundaries in miniature: Two examples from soil Bioscience. 53: 739-749. DOI: 10.1641/0006-3568(2003)053[0739:Bimtef]2.0.Co;2  1
2003 Herman DJ, Halverson LJ, Firestone MK. Nitrogen dynamics in an annual grassland: Oak canopy, climate, and microbial population effects Ecological Applications. 13: 593-604.  1
2003 Canals RM, Herman DJ, Firestone MK. How disturbance by fossorial mammals alters N cycling in a California annual grassland Ecology. 84: 875-881.  1
2002 Balser TC, Kirchner JW, Firestone MK. Methodological variability in microbial community level physiological profiles Soil Science Society of America Journal. 66: 519-523. DOI: 10.2136/Sssaj2002.5190  1
2001 Holden PA, Hersman LE, Firestone MK. Water Content Mediated Microaerophilic Toluene Biodegradation in Arid Vadose Zone Materials. Microbial Ecology. 42: 256-266. PMID 12024251 DOI: 10.1007/s00248-001-0010-3  1
2001 Miya RK, Firestone MK. Enhanced phenanthrene biodegradation in soil by slender oat root exudates and root debris. Journal of Environmental Quality. 30: 1911-8. PMID 11789996 DOI: 10.2134/Jeq2001.1911  1
2001 Tokunaga TK, Wan J, Firestone MK, Hazen TC, Schwartz E, Sutton SR, Newville M. Chromium diffusion and reduction in soil aggregates. Environmental Science & Technology. 35: 3169-74. PMID 11505996 DOI: 10.1021/Es010523M  1
2001 Hu S, Chapin FS, Firestone MK, Field CB, Chiariello NR. Nitrogen limitation of microbial decomposition in a grassland under elevated CO2. Nature. 409: 188-91. PMID 11196641 DOI: 10.1038/35051576  1
2001 Silver WL, Herman DJ, Firestone MK. Dissimilatory nitrate reduction to ammonium in upland tropical forest soils Ecology. 82: 2410-2416. DOI: 10.1890/0012-9658(2001)082[2410:Dnrtai]2.0.Co;2  1
2000 Halverson LJ, Firestone MK. Differential effects of permeating and nonpermeating solutes on the fatty acid composition of Pseudomonas putida. Applied and Environmental Microbiology. 66: 2414-21. PMID 10831419 DOI: 10.1128/Aem.66.6.2414-2421.2000  1
2000 Halverson LJ, Jones TM, Firestone MK. Release of intracellular solutes by four soil bacteria exposed to dilution stress Soil Science Society of America Journal. 64: 1630-1637. DOI: 10.2136/Sssaj2000.6451630X  1
2000 Miya RK, Firestone MK. Phenanthrene-degrader community dynamics in rhizosphere soil from a common annual grass Journal of Environmental Quality. 29: 584-592. DOI: 10.2134/Jeq2000.00472425002900020029X  1
2000 Waldrop MP, Balser TC, Firestone MK. Linking microbial community composition to function in a tropical soil Soil Biology and Biochemistry. 32: 1837-1846. DOI: 10.1016/S0038-0717(00)00157-7  1
1999 Hu S, Firestone MK, Chapin FS. Soil microbial feedbacks to atmospheric CO2 enrichment. Trends in Ecology & Evolution. 14: 433-437. PMID 10511719 DOI: 10.1016/S0169-5347(99)01682-1  1
1999 Jaeger CH, Lindow SE, Miller W, Clark E, Firestone MK. Mapping of sugar and amino acid availability in soil around roots with bacterial sensors of sucrose and tryptophan Applied and Environmental Microbiology. 65: 2685-90. PMID 10347061 DOI: 10.1128/Aem.65.6.2685-2690.1999  1
1999 Pedersen H, Dunkin KA, Firestone MK. The relative importance of autotrophic and heterotrophic nitrification in a conifer forest soil as measured by 15N tracer and pool dilution techniques Biogeochemistry. 44: 135-150. DOI: 10.1023/A:1006059930960  1
1998 Hu S, Firestone MK, Chapin FS. Elevated atmospheric CO2 and soil biota [3] Science. 281: 518.  1
1997 Holden PA, Hunt JR, Firestone MK. Toluene diffusion and reaction in unsaturated Pseudomonas putida biofilms. Biotechnology and Bioengineering. 56: 656-70. PMID 18642338 DOI: 10.1002/(Sici)1097-0290(19971220)56:6<656::Aid-Bit9>3.0.Co;2-M  1
1997 Holden PA, Halverson LJ, Firestone MK. Water stress effects on toluene biodegradation by Pseudomonas putida. Biodegradation. 8: 143-51. PMID 9396169 DOI: 10.1023/A:1008237819089  1
1997 Holden PA, Firestone MK. Soil microorganisms in soil cleanup: How can we improve our understanding? Journal of Environmental Quality. 26: 32-40.  1
1996 Stark JM, Firestone MK. Kinetic characteristics of ammonium-oxidizer communities in a California oak woodland-annual grassland Soil Biology and Biochemistry. 28: 1307-1317. DOI: 10.1016/S0038-0717(96)00133-2  1
1996 Norton JM, Firestone MK. N dynamics in the rhizosphere of Pinus ponderosa seedlings Soil Biology and Biochemistry. 28: 351-362. DOI: 10.1016/0038-0717(95)00155-7  1
1995 Stark JM, Firestone MK. Mechanisms for soil moisture effects on activity of nitrifying bacteria. Applied and Environmental Microbiology. 61: 218-21. PMID 16534906  1
1995 Hunt JR, Holden PA, Firestone MK. Coupling transport and biodegradation of VOCs in surface and subsurface soils. Environmental Health Perspectives. 103: 75-8. PMID 8565916 DOI: 10.1289/Ehp.95103S475  1
1995 Roberson EB, Sarig S, Shennan C, Firestone MK. Nutritional management of microbial polysaccharide production and aggregation in an agricultural soil Soil Science Society of America Journal. 59: 1587-1594. DOI: 10.2136/Sssaj1995.03615995005900060012X  1
1995 Stark JM, Firestone MK. Isotopic labeling of soil nitrate pools using nitrogen-15-nitric oxide gas Soil Science Society of America Journal. 59: 844-847.  1
1993 Roberson EB, Chenu C, Firestone MK. Microstructural changes in bacterial exopolysaccharides during desiccation Soil Biology and Biochemistry. 25: 1299-1301. DOI: 10.1016/0038-0717(93)90230-9  1
1993 Sarig S, Roberson EB, Firestone MK. Microbial activity-soil structure: Response to saline water irrigation Soil Biology and Biochemistry. 25: 693-697. DOI: 10.1016/0038-0717(93)90109-O  1
1993 Hart SC, Firestone MK, Paul EA, Smith JL. Flow and fate of soil nitrogen in an annual grassland and a young mixed-conifer forest Soil Biology and Biochemistry. 25: 431-442. DOI: 10.1016/0038-0717(93)90068-M  1
1992 Davidson EA, Hart SC, Firestone MK. Internal cycling of nitrate in soils of a mature coniferous forest Ecology. 73: 1148-1156. DOI: 10.2307/1940665  1
1992 Hart SC, Firestone MK, Paul EA. Decomposition and nutrient dynamics of ponderosa pine needles in a Mediterranean-type climate Canadian Journal of Forest Research. 22: 306-314. DOI: 10.1139/X92-040  1
1992 Roberson EB, Firestone MK. Relationship between desiccation and exopolysaccharide production in a soil Pseudomonas sp Applied and Environmental Microbiology. 58: 1284-1291.  1
1991 Norton JM, Firestone MK. Metabolic status of bacteria and fungi in the rhizosphere of ponderosa pine seedlings. Applied and Environmental Microbiology. 57: 1161-7. PMID 16348461 DOI: 10.1128/Aem.57.4.1161-1167.1991  1
1991 Davidson EA, Hart SC, Shanks CA, Firestone MK. Measuring gross nitrogen mineralization, immobilization, and nitrification by 15N isotopic pool dilution in intact soil cores Journal of Soil Science. 42: 335-349. DOI: 10.1111/J.1365-2389.1991.Tb00413.X  1
1991 McColl JG, Firestone MK. Soil chemical and microbial effects of simulated acid rain on clover and soft chess Water, Air, and Soil Pollution. 60: 301-313. DOI: 10.1007/BF00282629  1
1991 Hart SC, Firestone MK. Forest floor-mineral soil interactions in the internal nitrogen cycle of an old-growth forest Biogeochemistry. 12: 103-127. DOI: 10.1007/Bf00001809  1
1991 Roberson EB, Sarig S, Firestone MK. Cover crop management of polysaccharide-mediated aggregation in an orchard soil Soil Science Society of America Journal. 55: 734-739.  1
1991 Rudaz AO, Davidson EA, Firestone MK. Sources of nitrous oxide production following wetting of dry soil Fems Microbiology Letters. 85: 117-124.  1
1990 Jackson LE, Strauss RB, Firestone MK, Bartolome JW. Influence of tree canopies on grassland productivity and nitrogen dynamics in deciduous oak savanna Agriculture, Ecosystems and Environment. 32: 89-105. DOI: 10.1016/0167-8809(90)90126-X  1
1990 Norton JM, Smith JL, Firestone MK. Carbon flow in the rhizosphere of ponderosa pine seedlings Soil Biology and Biochemistry. 22: 449-455. DOI: 10.1016/0038-0717(90)90177-2  1
1990 Davidson EA, Stark JM, Firestone MK. Microbial production and consumption of nitrate in an annual grassland Ecology. 71: 1968-1975.  1
1989 Schimel JP, Firestone MK. Nitrogen incorporation and flow through a coniferous forest soil profile Soil Science Society of America Journal. 53: 779-784. DOI: 10.2136/Sssaj1989.03615995005300030025X  1
1989 Davidson EA, Eckert RW, Hart SC, Firestone MK. Direct extraction of microbial biomass nitrogen from forest and grassland soils of california Soil Biology and Biochemistry. 21: 773-778. DOI: 10.1016/0038-0717(89)90169-7  1
1989 Jackson LE, Schimel JP, Firestone MK. Short-term partitioning of ammonium and nitrate between plants and microbes in an annual grassland Soil Biology and Biochemistry. 21: 409-415. DOI: 10.1016/0038-0717(89)90152-1  1
1989 Schimel JP, Jackson LE, Firestone MK. Spatial and temporal effects on plant-microbial competition for inorganic nitrogen in a california annual grassland Soil Biology and Biochemistry. 21: 1059-1066. DOI: 10.1016/0038-0717(89)90044-8  1
1989 Schimel JP, Firestone MK. Inorganic N incorporation by coniferous forest floor material Soil Biology and Biochemistry. 21: 41-46. DOI: 10.1016/0038-0717(89)90008-4  1
1988 Jackson LE, Strauss RB, Firestone MK, Bartolome JW. Plant and soil nitrogen dynamics in California annual grassland Plant and Soil. 110: 9-17. DOI: 10.1007/Bf02143533  1
1987 Kieft TL, soroker E, firestone MK. Microbial biomass response to a rapid increase in water potential when dry soil is wetted Soil Biology and Biochemistry. 19: 119-126. DOI: 10.1016/0038-0717(87)90070-8  1
1984 Schimel JP, Firestone MK, Killham KS. Identification of heterotrophic nitrification in a sierran forest soil. Applied and Environmental Microbiology. 48: 802-6. PMID 16346646  0.92
1984 Killham K, Firestone MK. Proline transport increases growth efficiency in salt-stressed Streptomyces griseus. Applied and Environmental Microbiology. 48: 239-41. PMID 6433794  1
1983 Killham K, Firestone MK. Vesicular arbuscular mycorrhizal mediation of grass response to acidic and heavy metal depositions Plant and Soil. 72: 39-48. DOI: 10.1007/BF02185092  1
1982 Killham K, Firestone MK. Evaluation of accelerated h+ applications in predicting soil chemical and microbial changes due to acid rain Communications in Soil Science and Plant Analysis. 13: 995-1001. DOI: 10.1080/00103628209367328  1
1980 Firestone MK, Firestone RB, Tiedje JM. Nitrous oxide from soil denitrification: factors controlling its biological production. Science (New York, N.Y.). 208: 749-51. PMID 17771133 DOI: 10.1126/Science.208.4445.749  1
1979 Firestone MK, Tiedje JM. Temporal change in nitrous oxide and dinitrogen from denitrification following onset of anaerobiosis. Applied and Environmental Microbiology. 38: 673-9. PMID 16345447 DOI: 10.1128/Aem.38.4.673-679.1979  1
1979 Firestone MK, Firestone RB, Tiedje JM. Nitric oxide as an intermediate in denitrification: evidence from nitrogen-13 isotope exchange. Biochemical and Biophysical Research Communications. 91: 10-6. PMID 518609 DOI: 10.1016/0006-291X(79)90575-8  1
1978 Firestone MK, Tiedje JM. Pathway of degradation of nitrilotriacetate by a Pseudomonas species. Applied and Environmental Microbiology. 35: 955-61. PMID 655711 DOI: 10.1128/Aem.35.5.955-961.1978  1
1978 Firestone MK, Aust SD, Tiedje JM. A nitrilotriacetic acid monooxygenase with conditional NADH-oxidase activity. Archives of Biochemistry and Biophysics. 190: 617-23. PMID 31137 DOI: 10.1016/0003-9861(78)90318-1  1
1975 Firestone MK, Tiedje JM. Biodegradation of metal-nitrilotriacetate complexes by a Pseudomonas species: mechanism of reaction. Applied Microbiology. 29: 758-64. PMID 1155932 DOI: 10.1128/Aem.29.6.758-764.1975  1
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