| Year |
Citation |
Score |
| 2023 |
Zhu Y, Xu X, Xi Z, Liu J. Conservation priorities for endangered trees facing multiple threats around the world. Conservation Biology : the Journal of the Society For Conservation Biology. PMID 37424365 DOI: 10.1111/cobi.14142 |
0.343 |
|
| 2023 |
Chen C, Ruhfel BR, Li J, Wang Z, Zhang L, Zhang L, Mao X, Wang J, He D, Luo Y, Hu Q, Duan Y, Xu X, Xi Z, Liu J. Phylotranscriptomics of Swertiinae (Gentianaceae) reveals that key floral traits are not phylogenetically correlated. Journal of Integrative Plant Biology. PMID 36749624 DOI: 10.1111/jipb.13464 |
0.784 |
|
| 2022 |
Ma Y, Mao X, Wang J, Zhang L, Jiang Y, Geng Y, Ma T, Cai L, Huang S, Hollingsworth P, Mao K, Kang M, Li Y, Yang W, Wu H, ... ... Xi Z, et al. Pervasive hybridization during evolutionary radiation of subgenus in mountains of southwest China. National Science Review. 9: nwac276. PMID 36687562 DOI: 10.1093/nsr/nwac276 |
0.577 |
|
| 2022 |
Sun P, Jiao B, Yang Y, Shan L, Li T, Li X, Xi Z, Wang X, Liu J. WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes. Molecular Plant. PMID 36307977 DOI: 10.1016/j.molp.2022.10.018 |
0.327 |
|
| 2022 |
Xie H, Zhang L, Zhang C, Chang H, Xi Z, Xu X. Comparative analysis of the complete chloroplast genomes of six threatened subgenus Gynopodium (Magnolia) species. Bmc Genomics. 23: 716. PMID 36261795 DOI: 10.1186/s12864-022-08934-6 |
0.406 |
|
| 2022 |
Wang D, Xu X, Zhang H, Xi Z, Abbott RJ, Fu J, Liu J. Abiotic Niche Divergence of Hybrid Species from Their Progenitors. The American Naturalist. 200: 634-645. PMID 36260852 DOI: 10.1086/721372 |
0.358 |
|
| 2022 |
Xiong H, Wang D, Shao C, Yang X, Yang J, Ma T, Davis CC, Liu L, Xi Z. Species Tree Estimation and the Impact of Gene Loss Following Whole-Genome Duplication. Systematic Biology. PMID 35689633 DOI: 10.1093/sysbio/syac040 |
0.673 |
|
| 2021 |
Xie H, Tang Y, Fu J, Chi X, Du W, Dimitrov D, Liu J, Xi Z, Wu J, Xu X. Diversity patterns and conservation gaps of Magnoliaceae species in China. The Science of the Total Environment. 152665. PMID 34968599 DOI: 10.1016/j.scitotenv.2021.152665 |
0.382 |
|
| 2021 |
Hu Q, Ma Y, Mandáková T, Shi S, Chen C, Sun P, Zhang L, Feng L, Zheng Y, Feng X, Yang W, Jiang J, Li T, Zhou P, Yu Q, ... ... Xi Z, et al. Genome evolution of the psammophyte for desert adaptation and further speciation. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34649989 DOI: 10.1073/pnas.2025711118 |
0.402 |
|
| 2021 |
Chang H, Zhang L, Xie H, Liu J, Xi Z, Xu X. The Conservation of Chloroplast Genome Structure and Improved Resolution of Infrafamilial Relationships of Crassulaceae. Frontiers in Plant Science. 12: 631884. PMID 34276716 DOI: 10.3389/fpls.2021.631884 |
0.477 |
|
| 2021 |
Wang M, Tong S, Ma T, Xi Z, Liu J. The chromosome-level genome assembly of Sichuan pepper provides insights into apomixis, drought tolerance, and alkaloid biosynthesis. Molecular Ecology Resources. PMID 34145765 DOI: 10.1111/1755-0998.13449 |
0.35 |
|
| 2021 |
Li M, Yang Y, Xu R, Mu W, Li Y, Mao X, Zheng Z, Bi H, Hao G, Li X, Xu X, Xi Z, Shrestha N, Liu J. A chromosome-level genome assembly for the Tertiary relict plant Tetracentron sinense Oliv. (Trochodendraceae). Molecular Ecology Resources. PMID 33486895 DOI: 10.1111/1755-0998.13334 |
0.408 |
|
| 2021 |
Cai L, Arnold BJ, Xi Z, Khost DE, Patel N, Hartmann CB, Manickam S, Sasirat S, Nikolov LA, Mathews S, Sackton TB, Davis CC. Deeply Altered Genome Architecture in the Endoparasitic Flowering Plant Sapria himalayana Griff. (Rafflesiaceae). Current Biology : Cb. PMID 33485466 DOI: 10.1016/j.cub.2020.12.045 |
0.791 |
|
| 2020 |
Huang L, Ma Y, Jiang J, Li T, Yang W, Zhang L, Wu L, Feng L, Xi Z, Xu X, Liu J, Hu Q. A chromosome-scale reference genome of Lobularia maritima, an ornamental plant with high stress tolerance. Horticulture Research. 7: 197. PMID 33328471 DOI: 10.1038/s41438-020-00422-w |
0.396 |
|
| 2020 |
Cai L, Xi Z, Lemmon EM, Lemmon AR, Mast A, Buddenhagen CE, Liu L, Davis CC. The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales. Systematic Biology. PMID 33169797 DOI: 10.1093/sysbio/syaa083 |
0.622 |
|
| 2020 |
Park DS, Willis CG, Xi Z, Kartesz JT, Davis CC, Worthington S. Machine Learning Predicts Large Scale Declines in Native Plant Phylogenetic Diversity. The New Phytologist. PMID 32339295 DOI: 10.1111/Nph.16621 |
0.626 |
|
| 2020 |
Povilus RA, DaCosta JM, Grassa C, Satyaki PRV, Moeglein M, Jaenisch J, Xi Z, Mathews S, Gehring M, Davis CC, Friedman WE. Water lily () genome reveals variable genomic signatures of ancient vascular cambium losses. Proceedings of the National Academy of Sciences of the United States of America. PMID 32234787 DOI: 10.1073/Pnas.1922873117 |
0.786 |
|
| 2020 |
Yang Y, Sun P, Lv L, Wang D, Ru D, Li Y, Ma T, Zhang L, Shen X, Meng F, Jiao B, Shan L, Liu M, Wang Q, Qin Z, ... Xi Z, et al. Prickly waterlily and rigid hornwort genomes shed light on early angiosperm evolution. Nature Plants. PMID 32094642 DOI: 10.1038/S41477-020-0594-6 |
0.677 |
|
| 2020 |
Chen C, Zhang L, Li J, Mao X, Zhang L, Hu Q, Liu J, Xi Z. Phylotranscriptomics reveals extensive gene duplication in the subtribe Gentianinae (Gentianaceae) Journal of Systematics and Evolution. DOI: 10.1111/Jse.12651 |
0.386 |
|
| 2019 |
Yang X, Kang M, Yang Y, Xiong H, Wang M, Zhang Z, Wang Z, Wu H, Ma T, Liu J, Xi Z. A chromosome-level genome assembly of the Chinese tupelo Nyssa sinensis. Scientific Data. 6: 282. PMID 31767848 DOI: 10.1038/S41597-019-0296-Y |
0.372 |
|
| 2019 |
Wang M, Zhang L, Zhang Z, Li M, Wang D, Zhang X, Xi Z, Keefover-Ring K, Smart LB, DiFazio SP, Olson MS, Yin T, Liu J, Ma T. Phylogenomics of the genus Populus reveals extensive interspecific gene flow and balancing selection. The New Phytologist. PMID 31550399 DOI: 10.1111/Nph.16215 |
0.515 |
|
| 2019 |
Li MM, Wang DY, Zhang L, Kang MH, Lu ZQ, Zhu RB, Mao XX, Xi ZX, Tao M. Intergeneric Relationships within the Family Salicaceae based on Plastid Phylogenomics. International Journal of Molecular Sciences. 20. PMID 31382526 DOI: 10.3390/Ijms20153788 |
0.544 |
|
| 2019 |
Xie H, Wang D, Li M, Yang Y, Yang X, Xi Z. The complete chloroplast genome of the endangered species Oyama sinensis (Magnoliaceae) Mitochondrial Dna Part B. 4: 830-831. DOI: 10.1080/23802359.2019.1567286 |
0.448 |
|
| 2018 |
Zhang L, Xi Z, Wang M, Guo X, Ma T. Plastome phylogeny and lineage diversification of Salicaceae with focus on poplars and willows. Ecology and Evolution. 8: 7817-7823. PMID 30250665 DOI: 10.1002/Ece3.4261 |
0.545 |
|
| 2018 |
Cai L, Xi Z, Amorim AM, Sugumaran M, Rest JS, Liu L, Davis CC. Widespread ancient whole-genome duplications in Malpighiales coincide with Eocene global climatic upheaval. The New Phytologist. PMID 30030969 DOI: 10.1111/Nph.15357 |
0.674 |
|
| 2018 |
Park DS, Worthington S, Xi Z. Taxon sampling effects on the quantification and comparison of community phylogenetic diversity. Molecular Ecology. PMID 29423927 DOI: 10.1111/Mec.14520 |
0.313 |
|
| 2018 |
Liang Q, Xu X, Mao K, Wang M, Wang K, Xi Z, Liu J. Shifts in plant distributions in response to climate warming in a biodiversity hotspot, the Hengduan Mountains Journal of Biogeography. 45: 1334-1344. DOI: 10.1111/Jbi.13229 |
0.43 |
|
| 2018 |
Yang X, Yang Y, Kang M, Guo X, Ma T, Xi Z. The complete plastome of Nyssa yunnanensis, a critically endangered tree species Conservation Genetics Resources. 11: 313-315. DOI: 10.1007/S12686-018-1020-5 |
0.46 |
|
| 2017 |
Ma T, Wang K, Hu Q, Xi Z, Wan D, Wang Q, Feng J, Jiang D, Ahani H, Abbott RJ, Lascoux M, Nevo E, Liu J. Ancient polymorphisms and divergence hitchhiking contribute to genomic islands of divergence within a poplar species complex. Proceedings of the National Academy of Sciences of the United States of America. PMID 29279400 DOI: 10.1073/Pnas.1713288114 |
0.511 |
|
| 2016 |
Cai L, Xi Z, Peterson K, Rushworth C, Beaulieu J, Davis CC. Phylogeny of Elatinaceae and the Tropical Gondwanan Origin of the Centroplacaceae(Malpighiaceae, Elatinaceae) Clade. Plos One. 11: e0161881. PMID 27684711 DOI: 10.1371/Journal.Pone.0161881 |
0.664 |
|
| 2016 |
Bardon L, Sothers C, Prance GT, Malé PG, Xi Z, Davis CC, Murienne J, García-Villacorta R, Coissac E, Lavergne S, Chave J. Unraveling the biogeographical history of Chrysobalanaceae from plastid genomes. American Journal of Botany. PMID 27329943 DOI: 10.3732/Ajb.1500463 |
0.648 |
|
| 2015 |
Lyra GM, Costa ED, de Jesus PB, de Matos JC, Caires TA, Oliveira MC, Oliveira EC, Xi Z, Nunes JM, Davis CC. Phylogeny of Gracilariaceae (Rhodophyta): evidence from plastid and mitochondrial nucleotide sequences. Journal of Phycology. 51: 356-366. PMID 26986530 DOI: 10.1111/Jpy.12281 |
0.658 |
|
| 2015 |
Xi Z, Liu L, Davis CC. The impact of missing data on species tree estimation. Molecular Biology and Evolution. PMID 26589995 DOI: 10.1093/Molbev/Msv266 |
0.639 |
|
| 2015 |
Edwards SV, Xi Z, Janke A, Faircloth BC, McCormack JE, Glenn TC, Zhong B, Wu S, Lemmon EM, Lemmon AR, Leaché AD, Liu L, Davis CC. Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics. Molecular Phylogenetics and Evolution. PMID 26518740 DOI: 10.1016/J.Ympev.2015.10.027 |
0.584 |
|
| 2015 |
Guo G, Xu K, Zhang X, Zhu J, Lu M, Chen F, Liu L, Xi ZY, Bachmair A, Chen Q, Fu YF. Extensive Analysis of GmFTL and GmCOL Expression in Northern Soybean Cultivars in Field Conditions. Plos One. 10: e0136601. PMID 26371882 DOI: 10.1371/journal.pone.0136601 |
0.303 |
|
| 2015 |
Xi Z, Liu L, Davis CC. Genes with minimal phylogenetic information are problematic for coalescent analyses when gene tree estimation is biased. Molecular Phylogenetics and Evolution. 92: 63-71. PMID 26115844 DOI: 10.1016/J.Ympev.2015.06.009 |
0.642 |
|
| 2015 |
Davis CC, Xi Z. Horizontal gene transfer in parasitic plants. Current Opinion in Plant Biology. 26: 14-9. PMID 26051213 DOI: 10.1016/J.Pbi.2015.05.008 |
0.687 |
|
| 2015 |
Liu L, Xi Z, Wu S, Davis CC, Edwards SV. Estimating phylogenetic trees from genome-scale data. Annals of the New York Academy of Sciences. PMID 25873435 DOI: 10.1111/Nyas.12747 |
0.702 |
|
| 2015 |
Willis CG, Franzone BF, Xi Z, Davis CC. Corrigendum to: The establishment of Central American migratory corridors and the biogeographic origins of seasonally dry tropical forests in Mexico. Frontiers in Genetics. 6: 64. PMID 25759718 DOI: 10.3389/Fgene.2015.00064 |
0.526 |
|
| 2015 |
Liu L, Xi Z, Davis CC. Coalescent methods are robust to the simultaneous effects of long branches and incomplete lineage sorting. Molecular Biology and Evolution. 32: 791-805. PMID 25431481 DOI: 10.1093/Molbev/Msu331 |
0.619 |
|
| 2015 |
Lyra GdM, Costa EdS, de Jesus PB, de Matos JCG, Caires TA, Oliveira MC, Oliveira EC, Xi Z, Nunes JMdC, Davis CC. Phylogeny of Gracilariaceae (Rhodophyta): Evidence from plastid and mitochondrial nucleotide sequences Journal of Phycology. 51: 356-366. DOI: 10.1111/jpy.12281 |
0.517 |
|
| 2015 |
Davis CC, Xi Z. Horizontal gene transfer in parasitic plants Current Opinion in Plant Biology. 26: 14-19. DOI: 10.1016/j.pbi.2015.05.008 |
0.303 |
|
| 2014 |
Willis CG, Franzone BF, Xi Z, Davis CC. The establishment of Central American migratory corridors and the biogeographic origins of seasonally dry tropical forests in Mexico. Frontiers in Genetics. 5: 433. PMID 25566320 DOI: 10.3389/Fgene.2014.00433 |
0.667 |
|
| 2014 |
Horn JW, Xi Z, Riina R, Peirson JA, Yang Y, Dorsey BL, Berry PE, Davis CC, Wurdack KJ. Evolutionary bursts in Euphorbia (Euphorbiaceae) are linked with photosynthetic pathway. Evolution; International Journal of Organic Evolution. 68: 3485-504. PMID 25302554 DOI: 10.1111/Evo.12534 |
0.611 |
|
| 2014 |
Xi Z, Liu L, Rest JS, Davis CC. Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies. Systematic Biology. 63: 919-32. PMID 25077515 DOI: 10.1093/Sysbio/Syu055 |
0.675 |
|
| 2014 |
Davis CC, Schaefer H, Xi Z, Baum DA, Donoghue MJ, Harmon LJ. Long-term morphological stasis maintained by a plant-pollinator mutualism. Proceedings of the National Academy of Sciences of the United States of America. 111: 5914-9. PMID 24706921 DOI: 10.1073/Pnas.1403157111 |
0.696 |
|
| 2014 |
Davis CC, Xi Z, Mathews S. Plastid phylogenomics and green plant phylogeny: almost full circle but not quite there. Bmc Biology. 12: 11. PMID 24533863 DOI: 10.1186/1741-7007-12-11 |
0.651 |
|
| 2014 |
Zhong B, Xi Z, Goremykin VV, Fong R, McLenachan PA, Novis PM, Davis CC, Penny D. Streptophyte algae and the origin of land plants revisited using heterogeneous models with three new algal chloroplast genomes. Molecular Biology and Evolution. 31: 177-83. PMID 24136916 DOI: 10.1093/Molbev/Mst200 |
0.658 |
|
| 2013 |
Xi Z, Rest JS, Davis CC. Phylogenomics and coalescent analyses resolve extant seed plant relationships. Plos One. 8: e80870. PMID 24278335 DOI: 10.1371/Journal.Pone.0080870 |
0.721 |
|
| 2013 |
Xi Z, Wang Y, Bradley RK, Sugumaran M, Marx CJ, Rest JS, Davis CC. Massive mitochondrial gene transfer in a parasitic flowering plant clade. Plos Genetics. 9: e1003265. PMID 23459037 DOI: 10.1371/Journal.Pgen.1003265 |
0.711 |
|
| 2012 |
Xi Z, Ruhfel BR, Schaefer H, Amorim AM, Sugumaran M, Wurdack KJ, Endress PK, Matthews ML, Stevens PF, Mathews S, Davis CC. Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales. Proceedings of the National Academy of Sciences of the United States of America. 109: 17519-24. PMID 23045684 DOI: 10.1073/Pnas.1205818109 |
0.791 |
|
| 2012 |
Xi Z, Bradley RK, Wurdack KJ, Wong K, Sugumaran M, Bomblies K, Rest JS, Davis CC. Horizontal transfer of expressed genes in a parasitic flowering plant. Bmc Genomics. 13: 227. PMID 22681756 DOI: 10.1186/1471-2164-13-227 |
0.629 |
|
| 2011 |
Soltis DE, Smith SA, Cellinese N, Wurdack KJ, Tank DC, Brockington SF, Refulio-Rodriguez NF, Walker JB, Moore MJ, Carlsward BS, Bell CD, Latvis M, Crawley S, Black C, Diouf D, ... Xi Z, et al. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany. 98: 704-30. PMID 21613169 DOI: 10.3732/Ajb.1000404 |
0.762 |
|
| 2011 |
Ruhfel BR, Bittrich V, Bove CP, Gustafsson MH, Philbrick CT, Rutishauser R, Xi Z, Davis CC. Phylogeny of the clusioid clade (Malpighiales): evidence from the plastid and mitochondrial genomes. American Journal of Botany. 98: 306-25. PMID 21613119 DOI: 10.3732/Ajb.1000354 |
0.788 |
|
| 2011 |
Moore MJ, Hassan N, Gitzendanner MA, Bruenn RA, Croley M, Vandeventer A, Horn JW, Dhingra A, Brockington SF, Latvis M, Ramdial J, Alexandre R, Piedrahita A, Xi Z, Davis CC, et al. Phylogenetic analysis of the plastid inverted repeat for 244 species: Insights into deeper-level Angiosperm relationships from a long, slowly evolving sequence region International Journal of Plant Sciences. 172: 541-558. DOI: 10.1086/658923 |
0.636 |
|
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