| Year |
Citation |
Score |
| 2020 |
Trego AC, O'Sullivan S, Quince C, Mills S, Ijaz UZ, Collins G. Size Shapes the Active Microbiome of Methanogenic Granules, Corroborating a Biofilm Life Cycle. Msystems. 5. PMID 32994285 DOI: 10.1128/mSystems.00323-20 |
0.595 |
|
| 2020 |
Trego AC, Galvin E, Sweeney C, Dunning S, Murphy C, Mills S, Nzeteu C, Quince C, Connelly S, Ijaz UZ, Collins G. Growth and Break-Up of Methanogenic Granules Suggests Mechanisms for Biofilm and Community Development. Frontiers in Microbiology. 11: 1126. PMID 32582085 DOI: 10.3389/Fmicb.2020.01126 |
0.627 |
|
| 2020 |
Lee K, Kim DW, Lee DH, Kim YS, Bu JH, Cha JH, Thawng CN, Hwang EM, Seong HJ, Sul WJ, Wellington EMH, Quince C, Cha CJ. Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance. Microbiome. 8: 2. PMID 31910889 DOI: 10.1186/S40168-019-0774-7 |
0.308 |
|
| 2019 |
Yang C, Pei X, Wu Y, Yan L, Yan Y, Song Y, Coyle NM, Martinez-Urtaza J, Quince C, Hu Q, Jiang M, Feil E, Yang D, Song Y, Zhou D, et al. Recent mixing of Vibrio parahaemolyticus populations. The Isme Journal. PMID 31235840 DOI: 10.1038/S41396-019-0461-5 |
0.316 |
|
| 2019 |
Pasolli E, Asnicar F, Manara S, Zolfo M, Karcher N, Armanini F, Beghini F, Manghi P, Tett A, Ghensi P, Collado MC, Rice BL, DuLong C, Morgan XC, Golden CD, ... Quince C, et al. Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle. Cell. 176: 649-662.e20. PMID 30661755 DOI: 10.1016/J.Cell.2019.01.001 |
0.34 |
|
| 2018 |
Delmont TO, Quince C, Shaiber A, Esen ÖC, Lee ST, Rappé MS, MacLellan SL, Lücker S, Eren AM. Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes. Nature Microbiology. PMID 29891866 DOI: 10.1038/S41564-018-0176-9 |
0.336 |
|
| 2018 |
Joyce A, Ijaz UZ, Nzeteu C, Vaughan A, Shirran SL, Botting CH, Quince C, O'Flaherty V, Abram F. Linking Microbial Community Structure and Function During the Acidified Anaerobic Digestion of Grass. Frontiers in Microbiology. 9: 540. PMID 29619022 DOI: 10.3389/Fmicb.2018.00540 |
0.386 |
|
| 2018 |
Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, ... ... Quince C, et al. Publisher Correction: Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. PMID 29440750 DOI: 10.1038/S41564-018-0114-X |
0.327 |
|
| 2018 |
Costea PI, Hildebrand F, Manimozhiyan A, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, ... ... Quince C, et al. Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. 3: 8-16. PMID 29255284 DOI: 10.1038/S41564-017-0072-8 |
0.358 |
|
| 2017 |
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, ... ... Quince C, et al. Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software. Nature Methods. PMID 28967888 DOI: 10.1038/Nmeth.4458 |
0.326 |
|
| 2017 |
Quince C, Delmont TO, Raguideau S, Alneberg J, Darling AE, Collins G, Eren AM. DESMAN: a new tool for de novo extraction of strains from metagenomes. Genome Biology. 18: 181. PMID 28934976 DOI: 10.1186/S13059-017-1309-9 |
0.584 |
|
| 2017 |
Quince C, Walker AW, Simpson JT, Loman NJ, Segata N. Shotgun metagenomics, from sampling to analysis. Nature Biotechnology. 35: 833-844. PMID 28898207 DOI: 10.1038/Nbt.3935 |
0.404 |
|
| 2017 |
Fonseca VG, Sinniger F, Gaspar JM, Quince C, Creer S, Power DM, Peck LS, Clark MS. Revealing higher than expected meiofaunal diversity in Antarctic sediments: a metabarcoding approach. Scientific Reports. 7: 6094. PMID 28733608 DOI: 10.1038/S41598-017-06687-X |
0.387 |
|
| 2017 |
Connelly S, Shin SG, Dillon RJ, Ijaz UZ, Quince C, Sloan WT, Collins G. Bioreactor Scalability: Laboratory-Scale Bioreactor Design Influences Performance, Ecology, and Community Physiology in Expanded Granular Sludge Bed Bioreactors. Frontiers in Microbiology. 8: 664. PMID 28507535 DOI: 10.3389/Fmicb.2017.00664 |
0.608 |
|
| 2017 |
Castelino M, Tutino M, Moat J, Ijaz UZ, Parslew R, Al-Sharqi A, Warren RB, Quince C, Ho P, Upton M, Eyre S, Barton A. AB0115 Comparison of the bacterial stool microbiota in established psoriatic arthritis (PSA) and psoriasis (PSC) - exploratory analysis of pilot data Annals of the Rheumatic Diseases. 76: 1087-1087. DOI: 10.1136/Annrheumdis-2017-Eular.3404 |
0.337 |
|
| 2016 |
Sinclair L, Ijaz UZ, Jensen LJ, Coolen MJ, Gubry-Rangin C, Chroňáková A, Oulas A, Pavloudi C, Schnetzer J, Weimann A, Ijaz A, Eiler A, Quince C, Pafilis E. Seqenv: linking sequences to environments through text mining. Peerj. 4: e2690. PMID 28028456 DOI: 10.7717/Peerj.2690 |
0.343 |
|
| 2016 |
Ray JL, Althammer J, Skaar KS, Simonelli P, Larsen A, Stoecker D, Sazhin A, Ijaz UZ, Quince C, Nejstgaard JC, Frischer M, Pohnert G, Troedsson C. Metabarcoding and metabolome analysis of copepod grazing reveals feeding preference and linkage to metabolite classes in dynamic microbial plankton communities. Molecular Ecology. PMID 27662431 DOI: 10.1111/Mec.13844 |
0.367 |
|
| 2016 |
Cho SK, Kim DH, Quince C, Im WT, Oh SE, Shin SG. Low-strength ultrasonication positively affects methanogenic granules toward higher AD performance: Implications from microbial community shift. Ultrasonics Sonochemistry. 32: 198-203. PMID 27150761 DOI: 10.1016/J.Ultsonch.2016.03.010 |
0.371 |
|
| 2016 |
Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft JU, ... ... Quince C, et al. Challenges in microbial ecology: building predictive understanding of community function and dynamics. The Isme Journal. PMID 27022995 DOI: 10.1038/Ismej.2016.45 |
0.335 |
|
| 2016 |
Schirmer M, D'Amore R, Ijaz UZ, Hall N, Quince C. Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data. Bmc Bioinformatics. 17: 125. PMID 26968756 DOI: 10.1186/S12859-016-0976-Y |
0.308 |
|
| 2016 |
Haig SJ, Gauchotte-Lindsay C, Collins G, Quince C. Bioaugmentation Mitigates the Impact of Estrogen on Coliform-Grazing Protozoa in Slow Sand Filters. Environmental Science & Technology. 50: 3101-10. PMID 26895622 DOI: 10.1021/Acs.Est.5B05027 |
0.591 |
|
| 2016 |
Torondel B, Ensink JH, Gundogdu O, Ijaz UZ, Parkhill J, Abdelahi F, Nguyen VA, Sudgen S, Gibson W, Walker AW, Quince C. Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines. Microbial Biotechnology. PMID 26875588 DOI: 10.1111/1751-7915.12334 |
0.367 |
|
| 2016 |
Gregor I, Dröge J, Schirmer M, Quince C, McHardy AC. PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes. Peerj. 4: e1603. PMID 26870609 DOI: 10.7717/Peerj.1603 |
0.384 |
|
| 2016 |
D'Amore R, Ijaz UZ, Schirmer M, Kenny JG, Gregory R, Darby AC, Shakya M, Podar M, Quince C, Hall N. A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. Bmc Genomics. 17: 55. PMID 26763898 DOI: 10.1186/S12864-015-2194-9 |
0.393 |
|
| 2016 |
Oton EV, Quince C, Nicol GW, Prosser JI, Gubry-Rangin C. Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota. The Isme Journal. 10: 85-96. PMID 26140533 DOI: 10.1038/Ismej.2015.101 |
0.332 |
|
| 2016 |
Sagar N, Kay G, O’Connell N, Nwokolo C, Bardhan K, Quince C, Pallen M, Arasaradnam R. PWE-061 Dysbiosis in Patients with Bile Acid Diarrhoea (BAD) Demonstrated Using 16S RNA Gene Sequencing Gut. 65: A168-A168. DOI: 10.1136/Gutjnl-2016-312388.307 |
0.358 |
|
| 2015 |
Eren AM, Esen ÖC, Quince C, Vineis JH, Morrison HG, Sogin ML, Delmont TO. Anvi'o: an advanced analysis and visualization platform for 'omics data. Peerj. 3: e1319. PMID 26500826 DOI: 10.7717/Peerj.1319 |
0.339 |
|
| 2015 |
Haig SJ, Quince C, Davies RL, Dorea CC, Collins G. The relationship between microbial community evenness and function in slow sand filters. Mbio. 6: e00729-15. PMID 26463159 DOI: 10.1128/Mbio.00729-15 |
0.642 |
|
| 2015 |
Castelino M, Eyre S, Moat J, Fox G, Martin P, Ijaz U, Quince C, Ho P, Upton M, Barton A. The skin microbiome in psoriatic arthritis: methodology development and pilot data. Lancet (London, England). 385: S27. PMID 26312849 DOI: 10.1016/S0140-6736(15)60342-7 |
0.326 |
|
| 2015 |
Chroňáková A, Schloter-Hai B, Radl V, Endesfelder D, Quince C, Elhottová D, Šimek M, Schloter M. Response of Archaeal and Bacterial Soil Communities to Changes Associated with Outdoor Cattle Overwintering. Plos One. 10: e0135627. PMID 26274496 DOI: 10.1371/Journal.Pone.0135627 |
0.329 |
|
| 2015 |
Schirmer M, Ijaz UZ, D'Amore R, Hall N, Sloan WT, Quince C. Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform. Nucleic Acids Research. 43: e37. PMID 25586220 DOI: 10.1093/Nar/Gku1341 |
0.309 |
|
| 2015 |
Haig SJ, Schirmer M, D'Amore R, Gibbs J, Davies RL, Collins G, Quince C. Stable-isotope probing and metagenomics reveal predation by protozoa drives E. coli removal in slow sand filters. The Isme Journal. 9: 797-808. PMID 25279786 DOI: 10.1038/Ismej.2014.175 |
0.601 |
|
| 2014 |
Alneberg J, Bjarnason BS, de Bruijn I, Schirmer M, Quick J, Ijaz UZ, Lahti L, Loman NJ, Andersson AF, Quince C. Binning metagenomic contigs by coverage and composition. Nature Methods. 11: 1144-6. PMID 25218180 DOI: 10.1038/Nmeth.3103 |
0.337 |
|
| 2014 |
Haig SJ, Quince C, Davies RL, Dorea CC, Collins G. Replicating the microbial community and water quality performance of full-scale slow sand filters in laboratory-scale filters. Water Research. 61: 141-51. PMID 24908577 DOI: 10.1016/J.Watres.2014.05.008 |
0.621 |
|
| 2014 |
Wilhelm L, Besemer K, Fasching C, Urich T, Singer GA, Quince C, Battin TJ. Rare but active taxa contribute to community dynamics of benthic biofilms in glacier-fed streams. Environmental Microbiology. 16: 2514-24. PMID 24428193 DOI: 10.1111/1462-2920.12392 |
0.383 |
|
| 2014 |
Singh BK, Quince C, Macdonald CA, Khachane A, Thomas N, Al-Soud WA, Sørensen SJ, He Z, White D, Sinclair A, Crooks B, Zhou J, Campbell CD. Loss of microbial diversity in soils is coincident with reductions in some specialized functions. Environmental Microbiology. 16: 2408-20. PMID 24422656 DOI: 10.1111/1462-2920.12353 |
0.326 |
|
| 2014 |
Fonseca VG, Carvalho GR, Nichols B, Quince C, Johnson HF, Neill SP, Lambshead JD, Thomas WK, Power DM, Creer S. Metagenetic analysis of patterns of distribution and diversity of marine meiobenthic eukaryotes Global Ecology and Biogeography. DOI: 10.1111/Geb.12223 |
0.404 |
|
| 2013 |
Besemer K, Singer G, Quince C, Bertuzzo E, Sloan W, Battin TJ. Headwaters are critical reservoirs of microbial diversity for fluvial networks. Proceedings. Biological Sciences. 280: 20131760. PMID 24089333 DOI: 10.1098/Rspb.2013.1760 |
0.323 |
|
| 2013 |
Shakya M, Quince C, Campbell JH, Yang ZK, Schadt CW, Podar M. Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities. Environmental Microbiology. 15: 1882-99. PMID 23387867 DOI: 10.1111/1462-2920.12086 |
0.422 |
|
| 2013 |
Schirmer M, D'Amore L, Hall N, Quince C. Error profiles for Next Generation sequencing technologies Embnet.Journal. 19: 81. DOI: 10.14806/Ej.19.A.667 |
0.31 |
|
| 2012 |
Logares R, Haverkamp TH, Kumar S, Lanzén A, Nederbragt AJ, Quince C, Kauserud H. Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches. Journal of Microbiological Methods. 91: 106-13. PMID 22849829 DOI: 10.1016/J.Mimet.2012.07.017 |
0.329 |
|
| 2012 |
Vos M, Quince C, Pijl AS, de Hollander M, Kowalchuk GA. A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity. Plos One. 7: e30600. PMID 22355318 DOI: 10.1371/Journal.Pone.0030600 |
0.324 |
|
| 2012 |
Holmes I, Harris K, Quince C. Dirichlet multinomial mixtures: generative models for microbial metagenomics. Plos One. 7: e30126. PMID 22319561 DOI: 10.1371/Journal.Pone.0030126 |
0.351 |
|
| 2012 |
Fonseca VG, Nichols B, Lallias D, Quince C, Carvalho GR, Power DM, Creer S. Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses. Nucleic Acids Research. 40: e66. PMID 22278883 DOI: 10.1093/Nar/Gks002 |
0.367 |
|
| 2012 |
Gobet A, Böer SI, Huse SM, van Beusekom JE, Quince C, Sogin ML, Boetius A, Ramette A. Diversity and dynamics of rare and of resident bacterial populations in coastal sands. The Isme Journal. 6: 542-53. PMID 21975598 DOI: 10.1038/Ismej.2011.132 |
0.411 |
|
| 2011 |
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics (Oxford, England). 27: 2194-200. PMID 21700674 DOI: 10.1093/Bioinformatics/Btr381 |
0.309 |
|
| 2011 |
Henrik Nilsson R, Tedersoo L, Lindahl BD, Kjøller R, Carlsen T, Quince C, Abarenkov K, Pennanen T, Stenlid J, Bruns T, Larsson KH, Kõljalg U, Kauserud H. Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities. The New Phytologist. 191: 314-8. PMID 21557749 DOI: 10.1111/J.1469-8137.2011.03755.X |
0.349 |
|
| 2011 |
Hartmann M, Howes CG, Veldre V, Schneider S, Vaishampayan PA, Yannarell AC, Quince C, Johansson P, Björkroth KJ, Abarenkov K, Hallam SJ, Mohn WW, Nilsson RH. V-REVCOMP: automated high-throughput detection of reverse complementary 16S rRNA gene sequences in large environmental and taxonomic datasets. Fems Microbiology Letters. 319: 140-5. PMID 21453324 DOI: 10.1111/J.1574-6968.2011.02274.X |
0.304 |
|
| 2011 |
Quince C, Lanzen A, Davenport RJ, Turnbaugh PJ. Removing noise from pyrosequenced amplicons. Bmc Bioinformatics. 12: 38. PMID 21276213 DOI: 10.1186/1471-2105-12-38 |
0.351 |
|
| 2011 |
Haig SJ, Collins G, Davies RL, Dorea CC, Quince C. Biological aspects of slow sand filtration: past, present and future Water Supply. 11: 468-472. DOI: 10.2166/Ws.2011.076 |
0.62 |
|
| 2010 |
Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, Huson D, Jansson J, Knight R, Knight J, ... ... Quince C, et al. Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Standards in Genomic Sciences. 3: 243-8. PMID 21304727 DOI: 10.4056/Sigs.1433550 |
0.317 |
|
| 2010 |
Gobet A, Quince C, Ramette A. Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets. Nucleic Acids Research. 38: e155. PMID 20547594 DOI: 10.1093/Nar/Gkq545 |
0.361 |
|
| 2010 |
Turnbaugh PJ, Quince C, Faith JJ, McHardy AC, Yatsunenko T, Niazi F, Affourtit J, Egholm M, Henrissat B, Knight R, Gordon JI. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proceedings of the National Academy of Sciences of the United States of America. 107: 7503-8. PMID 20363958 DOI: 10.1073/Pnas.1002355107 |
0.375 |
|
| 2009 |
Quince C, Lanzén A, Curtis TP, Davenport RJ, Hall N, Head IM, Read LF, Sloan WT. Accurate determination of microbial diversity from 454 pyrosequencing data. Nature Methods. 6: 639-41. PMID 19668203 DOI: 10.1038/Nmeth.1361 |
0.316 |
|
| 2008 |
Quince C, Curtis TP, Sloan WT. The rational exploration of microbial diversity. The Isme Journal. 2: 997-1006. PMID 18650928 DOI: 10.1038/Ismej.2008.69 |
0.385 |
|
| Show low-probability matches. |