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Yuri Alan Gorby, PhD - Publications

Affiliations: 
1993-2006 Pacific Northwest National Laboratory, Richland, WA, United States 
 2006-2011 J. Craig Venter Institute, San Diego, CA, United States 
 2012-2019 Civil and Environmental Engineering Rensselaer Polytechnic Institute, Troy, NY, United States 
Area:
Geomicrobiology, Electromicrobiology
Website:
https://news.rpi.edu/luwakkey/3098
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62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Rees JD, Gorby YA, Sawyer SM. Synthesis and characterization of molybdenum disulfide nanoparticles in Shewanella oneidensis MR-1 biofilms. Biointerphases. 15: 041006. PMID 32709210 DOI: 10.1116/6.0000199  0.756
2015 Inskeep WP, Jay ZJ, Macur RE, Clingenpeel S, Tenney A, Lovalvo D, Beam JP, Kozubal MA, Shanks WC, Morgan LA, Kan J, Gorby Y, Yooseph S, Nealson K. Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function. Frontiers in Microbiology. 6: 1044. PMID 26579074 DOI: 10.3389/Fmicb.2015.01044  0.509
2015 Krumholz LR, Bradstock P, Sheik CS, Diao Y, Gazioglu O, Gorby Y, McInerney MJ. Syntrophic growth of Desulfovibrio alaskensis requires genes for H2 and formate metabolism as well as those for flagellum and biofilm formation. Applied and Environmental Microbiology. 81: 2339-48. PMID 25616787 DOI: 10.1128/Aem.03358-14  0.411
2015 Pirbadian S, Barchinger SE, Leung KM, Byun HS, Jangir Y, Bouhenni RA, Reed SB, Romine MF, Saffarini DA, Shi L, Gorby YA, Golbeck JH, El-Naggar MY. Bacterial Nanowires of Shewanella Oneidensis MR-1 are Outer Membrane and Periplasmic Extensions of the Extracellular Electron Transport Components Biophysical Journal. 108: 368a. DOI: 10.1016/J.Bpj.2014.11.2016  0.729
2014 Pirbadian S, Barchinger SE, Leung KM, Byun HS, Jangir Y, Bouhenni RA, Reed SB, Romine MF, Saffarini DA, Shi L, Gorby YA, Golbeck JH, El-Naggar MY. Shewanella oneidensis MR-1 nanowires are outer membrane and periplasmic extensions of the extracellular electron transport components. Proceedings of the National Academy of Sciences of the United States of America. 111: 12883-8. PMID 25143589 DOI: 10.1073/Pnas.1410551111  0.728
2014 Ishii S, Suzuki S, Norden-Krichmar TM, Phan T, Wanger G, Nealson KH, Sekiguchi Y, Gorby YA, Bretschger O. Microbial population and functional dynamics associated with surface potential and carbon metabolism. The Isme Journal. 8: 963-78. PMID 24351938 DOI: 10.1038/Ismej.2013.217  0.73
2013 Jang JK, Kan J, Bretschger O, Gorby YA, Hsu L, Kim BH, Nealson KH. Electricity generation by microbial fuel cell using microorganisms as catalyst in cathode. Journal of Microbiology and Biotechnology. 23: 1765-73. PMID 24225369 DOI: 10.4014/Jmb.1310.10117  0.722
2013 Leung KM, Wanger G, El-Naggar MY, Gorby Y, Southam G, Lau WM, Yang J. Shewanella oneidensis MR-1 bacterial nanowires exhibit p-type, tunable electronic behavior. Nano Letters. 13: 2407-11. PMID 23701405 DOI: 10.1021/Nl400237P  0.415
2013 Lin W, Wang Y, Gorby Y, Nealson K, Pan Y. Integrating niche-based process and spatial process in biogeography of magnetotactic bacteria. Scientific Reports. 3: 1643. PMID 23571508 DOI: 10.1038/Srep01643  0.479
2013 Wanger G, Gorby Y, El-Naggar MY, Yuzvinsky TD, Schaudinn C, Gorur A, Sedghizadeh PP. Electrically conductive bacterial nanowires in bisphosphonate-related osteonecrosis of the jaw biofilms. Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology. 115: 71-8. PMID 23217537 DOI: 10.1016/J.Oooo.2012.08.446  0.341
2012 Pfeffer C, Larsen S, Song J, Dong M, Besenbacher F, Meyer RL, Kjeldsen KU, Schreiber L, Gorby YA, El-Naggar MY, Leung KM, Schramm A, Risgaard-Petersen N, Nielsen LP. Filamentous bacteria transport electrons over centimetre distances. Nature. 491: 218-21. PMID 23103872 DOI: 10.1038/Nature11586  0.383
2012 Ishii S, Suzuki S, Norden-Krichmar TM, Nealson KH, Sekiguchi Y, Gorby YA, Bretschger O. Functionally stable and phylogenetically diverse microbial enrichments from microbial fuel cells during wastewater treatment. Plos One. 7: e30495. PMID 22347379 DOI: 10.1371/Journal.Pone.0030495  0.718
2012 Roy JN, Luckarift HR, Lau C, Falase A, Garcia KE, Ista LK, Chellamuthu P, Ramasamy RP, Gadhamshetty V, Wanger G, Gorby YA, Nealson KH, Bretschger O, Johnson GR, Atanassov P. A study of the flavin response by Shewanella cultures in carbon-limited environments Rsc Advances. 2: 10020. DOI: 10.1039/C2Ra21727A  0.733
2011 Kan J, Clingenpeel S, Macur RE, Inskeep WP, Lovalvo D, Varley J, Gorby Y, McDermott TR, Nealson K. Archaea in Yellowstone Lake. The Isme Journal. 5: 1784-95. PMID 21544103 DOI: 10.1038/Ismej.2011.56  0.478
2011 Clingenpeel S, Macur RE, Kan J, Inskeep WP, Lovalvo D, Varley J, Mathur E, Nealson K, Gorby Y, Jiang H, LaFracois T, McDermott TR. Yellowstone Lake: high-energy geochemistry and rich bacterial diversity. Environmental Microbiology. 13: 2172-85. PMID 21450005 DOI: 10.1111/J.1462-2920.2011.02466.X  0.495
2011 Leung KM, Wanger G, Guo Q, Gorby Y, Southam G, Lau WM, Yang J. Bacterial nanowires: conductive as silicon, soft as polymer Soft Matter. 7: 6617-6621. DOI: 10.1039/C1Sm05611E  0.42
2011 Yuzvinsky T, El-Naggar M, Wanger G, Leung KM, Southam G, Yang J, Ming Lau W, Nealon K, Gorby Y. Electrical Transport along Bacterial Nanowires Biophysical Journal. 100: 132a. DOI: 10.1016/J.Bpj.2010.12.925  0.45
2010 El-Naggar MY, Wanger G, Leung KM, Yuzvinsky TD, Southam G, Yang J, Lau WM, Nealson KH, Gorby YA. Electrical transport along bacterial nanowires from Shewanella oneidensis MR-1. Proceedings of the National Academy of Sciences of the United States of America. 107: 18127-31. PMID 20937892 DOI: 10.1073/Pnas.1004880107  0.59
2010 McLean JS, Wanger G, Gorby YA, Wainstein M, McQuaid J, Ishii SI, Bretschger O, Beyenal H, Nealson KH. Quantification of electron transfer rates to a solid phase electron acceptor through the stages of biofilm formation from single cells to multicellular communities. Environmental Science & Technology. 44: 2721-7. PMID 20199066 DOI: 10.1021/Es903043P  0.751
2010 Gorby YA, Lovley DR. Electron Transport in the Dissimilatory Iron Reducer, GS-15. Applied and Environmental Microbiology. 57: 867-70. PMID 16348451 DOI: 10.1128/Aem.57.3.867-870.1991  0.346
2009 Torres CI, Krajmalnik-Brown R, Parameswaran P, Marcus AK, Wanger G, Gorby YA, Rittmann BE. Selecting anode-respiring bacteria based on anode potential: phylogenetic, electrochemical, and microscopic characterization. Environmental Science & Technology. 43: 9519-24. PMID 20000550 DOI: 10.1021/Es902165Y  0.417
2009 Gorby YA, Yanina S, McLean JS, Rosso KM, Moyles D, Dohnalkova A, Beveridge TJ, In SC, Byung HK, Kyung SK, Culley DE, Reed SB, Romine MF, Saffarini DA, Hill EA, et al. Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms (Proceedings of the National Academy of Sciences of the United States of America (2006) 103, 30, (11358-11363) DOI 10.1073/pnas.0604517103) Proceedings of the National Academy of Sciences of the United States of America. 106: 9535. DOI: 10.1073/Pnas.0903426106  0.707
2009 Bose S, Hochella MF, Gorby YA, Kennedy DW, McCready DE, Madden AS, Lower BH. Bioreduction of hematite nanoparticles by the dissimilatory iron reducing bacterium Shewanella oneidensis MR-1 Geochimica Et Cosmochimica Acta. 73: 962-976. DOI: 10.1016/J.Gca.2008.11.031  0.315
2008 Shi L, Deng S, Marshall MJ, Wang Z, Kennedy DW, Dohnalkova AC, Mottaz HM, Hill EA, Gorby YA, Beliaev AS, Richardson DJ, Zachara JM, Fredrickson JK. Direct involvement of type II secretion system in extracellular translocation of Shewanella oneidensis outer membrane cytochromes MtrC and OmcA. Journal of Bacteriology. 190: 5512-6. PMID 18502849 DOI: 10.1128/Jb.00514-08  0.358
2008 Gorby YA, McLean JS, Korenevsky AA, Rosso KM, El-Naggar MY, Beveridge TJ. Redox‐reactive membrane vesicles produced by Shewanella Geobiology. 6: 232-241. PMID 18498526 DOI: 10.1111/J.1472-4669.2008.00158.X  0.34
2008 El-Naggar MY, Gorby YA, Xia W, Nealson KH. The molecular density of states in bacterial nanowires. Biophysical Journal. 95: L10-2. PMID 18441026 DOI: 10.1529/Biophysj.108.134411  0.575
2008 McLean JS, Pinchuk GE, Geydebrekht OV, Bilskis CL, Zakrajsek BA, Hill EA, Saffarini DA, Romine MF, Gorby YA, Fredrickson JK, Beliaev AS. Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1. Environmental Microbiology. 10: 1861-76. PMID 18412550 DOI: 10.1111/J.1462-2920.2008.01608.X  0.693
2008 Elias DA, Tollaksen SL, Kennedy DW, Mottaz HM, Giometti CS, McLean JS, Hill EA, Pinchuk GE, Lipton MS, Fredrickson JK, Gorby YA. The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression. Archives of Microbiology. 189: 313-24. PMID 18030449 DOI: 10.1007/S00203-007-0321-Y  0.312
2008 Bretschger O, Obraztsova A, Sturm CA, In SC, Gorby YA, Reed SB, Culley DE, Reardon CL, Barua S, Romine MF, Zhou J, Beliaev AS, Bouhenni R, Saffarini D, Mansfeld F, et al. Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants (Applied and Environmental Microbiology (2007) 73, 21, (7003-7012)) Applied and Environmental Microbiology. 74: 553. DOI: 10.1128/Aem.02560-07  0.773
2008 Burgos WD, McDonough JT, Senko JM, Zhang G, Dohnalkova AC, Kelly SD, Gorby Y, Kemner KM. Characterization of uraninite nanoparticles produced by Shewanella oneidensis MR-1 Geochimica Et Cosmochimica Acta. 72: 4901-4915. DOI: 10.1016/J.Gca.2008.07.016  0.341
2007 Bretschger O, Obraztsova A, Sturm CA, Chang IS, Gorby YA, Reed SB, Culley DE, Reardon CL, Barua S, Romine MF, Zhou J, Beliaev AS, Bouhenni R, Saffarini D, Mansfeld F, et al. Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants. Applied and Environmental Microbiology. 73: 7003-12. PMID 17644630 DOI: 10.1128/Aem.01087-07  0.772
2007 Biju V, Pan D, Gorby YA, Fredrickson J, McLean J, Saffarini D, Lu HP. Combined spectroscopic and topographic characterization of nanoscale domains and their distributions of a redox protein on bacterial cell surfaces. Langmuir : the Acs Journal of Surfaces and Colloids. 23: 1333-8. PMID 17241055 DOI: 10.1021/La061343Z  0.698
2007 Ntarlagiannis D, Atekwana EA, Hill EA, Gorby Y. Microbial nanowires: Is the subsurface "hardwired"? Geophysical Research Letters. 34. DOI: 10.1029/2007Gl030426  0.474
2006 Gorby YA, Yanina S, McLean JS, Rosso KM, Moyles D, Dohnalkova A, Beveridge TJ, Chang IS, Kim BH, Kim KS, Culley DE, Reed SB, Romine MF, Saffarini DA, Hill EA, et al. Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms. Proceedings of the National Academy of Sciences of the United States of America. 103: 11358-63. PMID 16849424 DOI: 10.1073/Pnas.0604517103  0.763
2006 Shi L, Chen B, Wang Z, Elias DA, Mayer MU, Gorby YA, Ni S, Lower BH, Kennedy DW, Wunschel DS, Mottaz HM, Marshall MJ, Hill EA, Beliaev AS, Zachara JM, et al. Isolation of a high-affinity functional protein complex between OmcA and MtrC: Two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1. Journal of Bacteriology. 188: 4705-14. PMID 16788180 DOI: 10.1128/Jb.01966-05  0.366
2005 Kolker E, Picone AF, Galperin MY, Romine MF, Higdon R, Makarova KS, Kolker N, Anderson GA, Qiu X, Auberry KJ, Babnigg G, Beliaev AS, Edlefsen P, Elias DA, Gorby YA, et al. Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. Proceedings of the National Academy of Sciences of the United States of America. 102: 2099-104. PMID 15684069 DOI: 10.1073/Pnas.0409111102  0.485
2005 Dohnalkova A, Marshall MJ, Kennedy DW, Gorby YA, Shi L, Beliaev A, Apkarian R, Fredrickson JK. The Role of Bacterial Exopolymers in Metal Sorption and Reduction Microscopy and Microanalysis. 11: 116-117. DOI: 10.1017/S1431927605506688  0.327
2005 Gonzalez-Gil G, Amonette J, Romine M, Gorby Y, Geesey G. Bioreduction of natural specular hematite under flow conditions Geochimica Et Cosmochimica Acta. 69: 1145-1155. DOI: 10.1016/J.Gca.2004.08.014  0.352
2004 Dohnalkova A, Hansel C, Gorby Y, Fendorf S. Electron microscopy evaluation of the role of dissimilatory metal-reducing bacteria in biomineralization pathways Microscopy and Microanalysis. 10: 1538-1539. DOI: 10.1017/S1431927604884873  0.461
2003 Templeton AS, Trainor TP, Spormann AM, Newville M, Sutton SR, Dohnalkova A, Gorby Y, Brown GE. Sorption versus biomineralization of Pb(II) within Burkholderia cepacia biofilms. Environmental Science & Technology. 37: 300-7. PMID 12564901 DOI: 10.1021/Es025972G  0.343
2003 Neal AL, Rosso KM, Geesey GG, Gorby YA, Little BJ. Surface structure effects on direct reduction of iron oxides by Shewanella oneidensis Geochimica Et Cosmochimica Acta. 67: 4489-4503. DOI: 10.1016/S0016-7037(03)00386-7  0.398
2003 Rosso KM, Zachara JM, Fredrickson JK, Gorby YA, Smith SC. Nonlocal bacterial electron transfer to hematite surfaces Geochimica Et Cosmochimica Acta. 67: 1081-1087. DOI: 10.1016/S0016-7037(02)00904-3  0.422
2002 Liu C, Gorby YA, Zachara JM, Fredrickson JK, Brown CF. Reduction kinetics of Fe(III), Co(III), U(VI), Cr(VI), and Tc(VII) in cultures of dissimilatory metal-reducing bacteria. Biotechnology and Bioengineering. 80: 637-49. PMID 12378605 DOI: 10.1002/Bit.10430  0.394
2002 Korenevsky AA, Vinogradov E, Gorby YA, Beveridge TJ. Characterization of the lipopolysaccharides and capsules of Shewanella spp. Applied and Environmental Microbiology. 68: 4653-4657. PMID 12200327 DOI: 10.1128/Aem.68.9.4653-4657.2002  0.338
2002 Zachara JM, Kukkadapu RK, Fredrickson JK, Gorby YA, Smith SC. Biomineralization of Poorly Crystalline Fe(III) Oxides by Dissimilatory Metal Reducing Bacteria (DMRB) Geomicrobiology Journal. 19: 179-207. DOI: 10.1080/01490450252864271  0.375
2002 Rai D, Gorby YA, Fredrickson JK, Moore DA, Yui M. Reductive Dissolution of PuO2(am): The Effect of Fe(II) and Hydroquinone Journal of Solution Chemistry. 31: 433-453. DOI: 10.1023/A:1020200911842  0.308
2001 Fredrickson JK, Zachara JM, Kukkadapu RK, Gorby YA, Smith SC, Brown CF. Biotransformation of Ni-substituted hydrous ferric oxide by an Fe(III)-reducing bacterium. Environmental Science & Technology. 35: 703-12. PMID 11349281 DOI: 10.1021/Es001500V  0.351
2001 Liu C, Zachara JM, Gorby YA, Szecsody JE, Brown CF. Microbial reduction of Fe(III) and sorption/precipitation of Fe(II) on Shewanella putrefaciens strain CN32. Environmental Science & Technology. 35: 1385-93. PMID 11348071 DOI: 10.1021/Es0015139  0.319
2001 Sokolov I, Smith DS, Henderson GS, Gorby YA, Ferris FG. Cell surface electrochemical heterogeneity of the Fe(III)-reducing bacteria Shewanella putrefaciens. Environmental Science & Technology. 35: 341-7. PMID 11347607 DOI: 10.1021/Es001258S  0.332
2001 Parmar N, Gorby YA, Beveridge TJ, Ferris FG. Formation of green rust and immobilization of nickel in response to bacterial reduction of hydrous ferric oxide Geomicrobiology Journal. 18: 375-385. DOI: 10.1080/014904501753210549  0.348
2000 Wildung RE, Gorby YA, Krupka KM, Hess NJ, Li SW, Plymale AE, McKinley JP, Fredrickson JK. Effect of Electron Donor and Solution Chemistry on Products of Dissimilatory Reduction of Technetium by Shewanella putrefaciens Applied and Environmental Microbiology. 66: 2451-2460. PMID 10831424 DOI: 10.1128/Aem.66.6.2451-2460.2000  0.424
2000 Fredrickson JK, Zachara JM, Kennedy DW, Duff MC, Gorby YA, Li SW, Krupka KM. Reduction of U(VI) in goethite (α-FeOOH) suspensions by a dissimilatory metal-reducing bacterium Geochimica Et Cosmochimica Acta. 64: 3085-3098. DOI: 10.1016/S0016-7037(00)00397-5  0.425
1999 Kieft TL, Fredrickson JK, Onstott TC, Gorby YA, Kostandarithes HM, Bailey TJ, Kennedy DW, Li SW, Plymale AE, Spadoni CM, Gray MS. Dissimilatory reduction of Fe(III) and other electron acceptors by a Thermus isolate. Applied and Environmental Microbiology. 65: 1214-21. PMID 10049886 DOI: 10.1128/Aem.65.3.1214-1221.1999  0.363
1998 Gorby YA, Caccavo F, Bolton H. Microbial Reduction of CobaltIIIEDTA- in the Presence and Absence of Manganese(IV) Oxide Environmental Science & Technology. 32: 244-250. DOI: 10.1021/Es970516R  0.359
1998 Johnson TL, Fish W, Gorby YA, Tratnyek PG. Degradation of carbon tetrachloride by iron metal: Complexation effects on the oxide surface Journal of Contaminant Hydrology. 29: 379-398. DOI: 10.1016/S0169-7722(97)00063-6  0.34
1997 Truex MJ, Peyton BM, Valentine NB, Gorby YA. Kinetics of U(VI) reduction by a dissimilatory Fe(III)-reducing bacterium under non-growth conditions Biotechnology and Bioengineering. 55: 490-496. DOI: 10.1002/(Sici)1097-0290(19970805)55:3<490::Aid-Bit4>3.0.Co;2-7  0.361
1996 Fredrickson JK, Gorby YA. Environmental processes mediated by iron-reducing bacteria Current Opinion in Biotechnology. 7: 287-294. PMID 8785432 DOI: 10.1016/S0958-1669(96)80032-2  0.322
1993 Lovley DR, Giovannoni SJ, White DC, Champine JE, Phillips EJ, Gorby YA, Goodwin S. Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals. Archives of Microbiology. 159: 336-44. PMID 8387263 DOI: 10.1007/Bf00290916  0.385
1991 Lovley DR, Phillips EJP, Gorby YA, Landa ER. Microbial reduction of uranium Nature. 350: 413-416. DOI: 10.1038/350413A0  0.411
1990 Krueger S, Olson GJ, Rhyne JJ, Blakemore RP, Gorby YA, Blakemore N. Small-angle neutron scattering from bacterial magnetite Journal of Applied Physics. 67: 4475-4477. DOI: 10.1063/1.344886  0.625
1989 Krueger S, Olson GJ, Rhyne JJ, Blakemore RP, Gorby YA, Blakemore N. Small angle neutron and X-ray scattering from magnetite crystals in magnetotactic bacteria Journal of Magnetism and Magnetic Materials. 82: 17-28. DOI: 10.1016/0304-8853(89)90057-7  0.623
1988 Gorby YA, Beveridge TJ, Blakemore RP. Characterization of the bacterial magnetosome membrane. Journal of Bacteriology. 170: 834-841. PMID 3123464 DOI: 10.1128/Jb.170.2.834-841.1988  0.656
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