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Jizhong Zhou, Ph.D. - Publications

Affiliations: 
2005- Department of Microbiology and Plant Biology University of Oklahoma, Norman, OK, United States 
Area:
Environmental genomics, Microbial ecology
Website:
https://www.ou.edu/ieg

500 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Bates CT, Escalas A, Kuang J, Hale L, Wang Y, Herman D, Nuccio EE, Wan X, Bhattacharyya A, Fu Y, Tian R, Wang G, Ning D, Yang Y, Wu L, ... ... Zhou J, et al. Conversion of marginal land into switchgrass conditionally accrues soil carbon but reduces methane consumption. The Isme Journal. PMID 34211103 DOI: 10.1038/s41396-021-00916-y  0.84
2021 Zhang C, Xiao X, Zhao Y, Zhou J, Sun B, Liang Y. Patterns of microbial arsenic detoxification genes in low-arsenic continental paddy soils. Environmental Research. 111584. PMID 34186083 DOI: 10.1016/j.envres.2021.111584  0.76
2021 Teng J, Tian J, Barnard R, Yu G, Kuzyakov Y, Zhou J. Aboveground and Belowground Plant Traits Explain Latitudinal Patterns in Topsoil Fungal Communities From Tropical to Cold Temperate Forests. Frontiers in Microbiology. 12: 633751. PMID 34177822 DOI: 10.3389/fmicb.2021.633751  0.52
2021 Huang M, Chai L, Jiang D, Zhang M, Jia W, Huang Y, Zhou J. Dissolved organic matter (DOM) quality drives biogeographic patterns of soil bacterial communities and their association networks in semi-arid regions. Fems Microbiology Ecology. PMID 34156067 DOI: 10.1093/femsec/fiab083  0.56
2021 Sun C, Zhang B, Ning D, Zhang Y, Dai T, Wu L, Li T, Liu W, Zhou J, Wen X. Seasonal dynamics of the microbial community in two full-scale wastewater treatment plants: Diversity, composition, phylogenetic group based assembly and co-occurrence pattern. Water Research. 200: 117295. PMID 34091223 DOI: 10.1016/j.watres.2021.117295  0.84
2021 Cornell CR, Zhang Y, Van Nostrand JD, Wagle P, Xiao X, Zhou J. Temporal Changes of Virus-Like Particle Abundance and Metagenomic Comparison of Viral Communities in Cropland and Prairie Soils. Msphere. e0116020. PMID 34077260 DOI: 10.1128/mSphere.01160-20  0.84
2021 Shi W, Ma Q, Pan F, Fan Y, Kempher ML, Ning D, Qu Y, Wall JD, Zhou A, Zhou J. Genetic Basis of Chromate Adaptation and the Role of the Pre-existing Genetic Divergence during an Experimental Evolution Study with Desulfovibrio vulgaris Populations. Msystems. e0049321. PMID 34061571 DOI: 10.1128/mSystems.00493-21  0.76
2021 Zhou J, Yu X, Liu J, Qin W, He Z, Stahl D, Jiao N, Zhou J, Tu Q. VBPath for Accurate Metagenomic Profiling of Microbially Driven Cobalamin Synthesis Pathways. Msystems. e0049721. PMID 34060913 DOI: 10.1128/mSystems.00497-21  0.8
2021 Yuan MM, Kakouridis A, Starr E, Nguyen N, Shi S, Pett-Ridge J, Nuccio E, Zhou J, Firestone M. Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches. Mbio. 12. PMID 33879589 DOI: 10.1128/mBio.03509-20  0.56
2021 Lui LM, Majumder EL, Smith HJ, Carlson HK, von Netzer F, Fields MW, Stahl DA, Zhou J, Hazen TC, Baliga NS, Adams PD, Arkin AP. Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology. Frontiers in Microbiology. 12: 642422. PMID 33841364 DOI: 10.3389/fmicb.2021.642422  0.56
2021 Ma B, Stirling E, Liu Y, Zhao K, Zhou J, Singh BK, Tang C, Dahlgren RA, Xu J. Soil Biogeochemical Cycle Couplings Inferred from a Function-Taxon Network. Research (Washington, D.C.). 2021: 7102769. PMID 33796862 DOI: 10.34133/2021/7102769  0.72
2021 Lei J, Guo X, Zeng Y, Zhou J, Gao Q, Yang Y. Author Correction: Temporal changes in global soil respiration since 1987. Nature Communications. 12: 1801. PMID 33727550 DOI: 10.1038/s41467-021-22014-5  0.84
2021 Qi Q, Haowei Y, Zhang Z, Van Nostrand JD, Wu L, Guo X, Feng J, Wang M, Yang S, Zhao J, Gao Q, Zhang Q, Zhao M, Xie C, Ma Z, ... ... Zhou J, et al. Microbial Functional Responses Explain Alpine Soil Carbon Fluxes under Future Climate Scenarios. Mbio. 12. PMID 33622729 DOI: 10.1128/mBio.00761-20  0.84
2021 Turkarslan S, Stopnisek N, Thompson AW, Arens CE, Valenzuela JJ, Wilson J, Hunt KA, Hardwicke J, de Lomana ALG, Lim S, Seah YM, Fu Y, Wu L, Zhou J, Hillesland KL, et al. Synergistic epistasis enhances the co-operativity of mutualistic interspecies interactions. The Isme Journal. PMID 33612833 DOI: 10.1038/s41396-021-00919-9  0.8
2021 Shu D, Guo Y, Zhang B, Zhang C, Van Nostrand JD, Lin Y, Zhou J, Wei G. Rare prokaryotic sub-communities dominate the complexity of ecological networks and soil multinutrient cycling during long-term secondary succession in China's Loess Plateau. The Science of the Total Environment. 774: 145737. PMID 33611012 DOI: 10.1016/j.scitotenv.2021.145737  0.84
2021 Cheng J, Han Z, Cong J, Yu J, Zhou J, Zhao M, Zhang Y. Edaphic variables are better indicators of soil microbial functional structure than plant-related ones in subtropical broad-leaved forests. The Science of the Total Environment. 773: 145630. PMID 33582323 DOI: 10.1016/j.scitotenv.2021.145630  0.84
2021 Gao Y, Ding J, Yuan M, Chiariello N, Docherty K, Field C, Gao Q, Gu B, Gutknecht J, Hungate BA, Le Roux X, Niboyet A, Qi Q, Shi Z, Zhou J, et al. Long-term warming in a Mediterranean-type grassland affects soil bacterial functional potential but not bacterial taxonomic composition. Npj Biofilms and Microbiomes. 7: 17. PMID 33558544 DOI: 10.1038/s41522-021-00187-7  0.84
2021 Tian J, Zong N, Hartley IP, He N, Zhang J, Powlson D, Zhou J, Kuzyakov Y, Zhang F, Yu G, Dungait JAJ. Microbial metabolic response to winter warming stabilizes soil carbon. Global Change Biology. PMID 33528058 DOI: 10.1111/gcb.15538  0.52
2021 Zhang B, Ning D, Van Nostrand JD, Sun C, Yang Y, Zhou J, Wen X. The call for regional design code from the regional discrepancy of microbial communities in activated sludge. Environmental Pollution (Barking, Essex : 1987). 273: 116487. PMID 33482461 DOI: 10.1016/j.envpol.2021.116487  0.84
2021 Lei J, Guo X, Zeng Y, Zhou J, Gao Q, Yang Y. Temporal changes in global soil respiration since 1987. Nature Communications. 12: 403. PMID 33452246 DOI: 10.1038/s41467-020-20616-z  0.84
2020 Gao Q, Wang G, Xue K, Yang Y, Xie J, Yu H, Bai S, Liu F, He Z, Ning D, Hobbie SE, Reich PB, Zhou J. Stimulation of soil respiration by elevated CO is enhanced under nitrogen limitation in a decade-long grassland study. Proceedings of the National Academy of Sciences of the United States of America. PMID 33318221 DOI: 10.1073/pnas.2002780117  0.84
2020 Cheng J, Yang Y, Yuan MM, Gao Q, Wu L, Qin Z, Shi ZJ, Schuur EAG, Cole JR, Tiedje JM, Zhou J. Winter warming rapidly increases carbon degradation capacities of fungal communities in tundra soil: potential consequences on carbon stability. Molecular Ecology. PMID 33305411 DOI: 10.1111/mec.15773  0.84
2020 Han S, Luo X, Hao X, Ouyang Y, Zeng L, Wang L, Wen S, Wang B, Van Nostrand JD, Chen W, Zhou J, Huang Q. Microscale heterogeneity of the soil nitrogen cycling microbial functional structure and potential metabolism. Environmental Microbiology. PMID 33283951 DOI: 10.1111/1462-2920.15348  0.72
2020 Gao Q, Gao S, Bates C, Zeng Y, Lei J, Su H, Dong Q, Qin Z, Zhao J, Zhang Q, Ning D, Huang Y, Zhou J, Yang Y. The microbial network property as a bio-indicator of antibiotic transmission in the environment. The Science of the Total Environment. 143712. PMID 33277004 DOI: 10.1016/j.scitotenv.2020.143712  0.84
2020 Chen Q, Yuan Y, Hu Y, Wang J, Si G, Xu R, Zhou J, Xi C, Hu A, Zhang G. Excessive nitrogen addition accelerates N assimilation and P utilization by enhancing organic carbon decomposition in a Tibetan alpine steppe. The Science of the Total Environment. 142848. PMID 33268263 DOI: 10.1016/j.scitotenv.2020.142848  0.72
2020 Liu S, Dai J, Wei H, Li S, Wang P, Zhu T, Zhou J, Qiu D. DNRA and denitrification pathways are leveraged by cyclic AMP receptor protein (CRP) paralogues based on electron donor/acceptor limitation in PV-4. Applied and Environmental Microbiology. PMID 33158888 DOI: 10.1128/AEM.01964-20  0.72
2020 Wang X, Lin L, Zhou J. Links among extracellular enzymes, lignin degradation, and cell growth establish the models to identify marine lignin-utilizing bacteria. Environmental Microbiology. PMID 33107668 DOI: 10.1111/1462-2920.15289  0.84
2020 Zhao M, Zhao J, Yuan J, Hale L, Wen T, Huang Q, Vivanco JM, Zhou J, Kowalchuk GA, Shen Q. Root exudates drive soil-microbe-nutrient feedbacks in response to plant growth. Plant, Cell & Environment. PMID 33103781 DOI: 10.1111/pce.13928  0.72
2020 Guo X, Gao Q, Yuan M, Wang G, Zhou X, Feng J, Shi Z, Hale L, Wu L, Zhou A, Tian R, Liu F, Wu B, Chen L, Jung CG, ... ... Zhou J, et al. Gene-informed decomposition model predicts lower soil carbon loss due to persistent microbial adaptation to warming. Nature Communications. 11: 4897. PMID 32994415 DOI: 10.1038/s41467-020-18706-z  0.84
2020 Wilpiszeski RL, Gionfriddo CM, Wymore AM, Moon JW, Lowe KA, Podar M, Rafie S, Fields MW, Hazen TC, Ge X, Poole F, Adams MWW, Chakraborty R, Fan Y, Van Nostrand JD, ... Zhou J, et al. In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations. Plos One. 15: e0232437. PMID 32986713 DOI: 10.1371/journal.pone.0232437  0.72
2020 Ning D, Yuan M, Wu L, Zhang Y, Guo X, Zhou X, Yang Y, Arkin AP, Firestone MK, Zhou J. A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming. Nature Communications. 11: 4717. PMID 32948774 DOI: 10.1038/S41467-020-18560-Z  0.84
2020 Wu B, Liu F, Zhou A, Li J, Shu L, Kempher ML, Yang X, Ning D, Pan F, Zane GM, Wall JD, Van Nostrand JD, Juneau P, Chen S, Yan Q, ... Zhou J, et al. Experimental evolution reveals nitrate tolerance mechanisms in Desulfovibrio vulgaris. The Isme Journal. PMID 32934357 DOI: 10.1038/S41396-020-00753-5  0.8
2020 He Z, Deng Y, Xu M, Li J, Liang J, Xiong J, Yu H, Wu B, Wu L, Xue K, Shi S, Carrillo Y, Van Nostrand JD, Hobbie SE, Reich PB, ... ... Zhou J, et al. Microbial functional genes commonly respond to elevated carbon dioxide. Environment International. 144: 106068. PMID 32871382 DOI: 10.1016/J.Envint.2020.106068  0.8
2020 Mu DS, Wang S, Liang QY, Du ZZ, Tian R, Ouyang Y, Wang XP, Zhou A, Gong Y, Chen GJ, Van Nostrand J, Yang Y, Zhou J, Du ZJ. Bradymonabacteria, a novel bacterial predator group with versatile survival strategies in saline environments. Microbiome. 8: 126. PMID 32867860 DOI: 10.1186/S40168-020-00902-0  0.84
2020 Li E, Deng T, Yan L, Zhou J, He Z, Deng Y, Xu M. Elevated nitrate simplifies microbial community compositions and interactions in sulfide-rich river sediments. The Science of the Total Environment. 750: 141513. PMID 32853935 DOI: 10.1016/J.Scitotenv.2020.141513  0.8
2020 Xue K, Van Nostrand JD, Zhou J, Neu S, Müller I, Giagnoni L, Renella G. Phytomanagement Reduces Metal Availability and Microbial Metal Resistance in a Metal Contaminated Soil. Frontiers in Microbiology. 11: 1899. PMID 32849472 DOI: 10.3389/Fmicb.2020.01899  0.72
2020 Kempher ML, Tao X, Song R, Wu B, Stahl DA, Wall JD, Arkin AP, Zhou A, Zhou J. Effects of Genetic and Physiological Divergence on the Evolution of a Sulfate-Reducing Bacterium under Conditions of Elevated Temperature. Mbio. 11. PMID 32817099 DOI: 10.1128/Mbio.00569-20  0.68
2020 Sidhu JPS, Gupta VVSR, Stange C, Ho J, Harris N, Barry K, Gonzalez D, Van Nostrand JD, Zhou J, Page D, Tiehm A, Toze S. Prevalence of antibiotic resistance and virulence genes in the biofilms from an aquifer recharged with stormwater. Water Research. 185: 116269. PMID 32798893 DOI: 10.1016/J.Watres.2020.116269  0.72
2020 Qin W, Zheng Y, Zhao F, Wang Y, Urakawa H, Martens-Habbena W, Liu H, Huang X, Zhang X, Nakagawa T, Mende DR, Bollmann A, Wang B, Zhang Y, Amin SA, ... ... Zhou J, et al. Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea. The Isme Journal. PMID 32636492 DOI: 10.1038/S41396-020-0710-7  0.84
2020 Avila-Jimenez ML, Burns G, He Z, Zhou J, Hodson A, Avila-Jimenez JL, Pearce D. Functional Associations and Resilience in Microbial Communities. Microorganisms. 8. PMID 32599781 DOI: 10.3390/microorganisms8060951  0.8
2020 Picazo F, Vilmi A, Aalto J, Soininen J, Casamayor EO, Liu Y, Wu Q, Ren L, Zhou J, Shen J, Wang J. Climate mediates continental scale patterns of stream microbial functional diversity. Microbiome. 8: 92. PMID 32534595 DOI: 10.1186/S40168-020-00873-2  0.72
2020 Tao X, Feng J, Yang Y, Wang G, Tian R, Fan F, Ning D, Bates CT, Hale L, Yuan MM, Wu L, Gao Q, Lei J, Schuur EAG, Yu J, ... ... Zhou J, et al. Winter warming in Alaska accelerates lignin decomposition contributed by Proteobacteria. Microbiome. 8: 84. PMID 32503635 DOI: 10.1186/S40168-020-00838-5  0.84
2020 Zou Y, Ning D, Huang Y, Liang Y, Wang H, Duan L, Yuan T, He Z, Yang Y, Xue K, Van Nostrand JD, Zhou J. Functional structures of soil microbial community relate to contrasting NO emission patterns from a highly acidified forest. The Science of the Total Environment. 725: 138504. PMID 32302850 DOI: 10.1016/J.Scitotenv.2020.138504  0.84
2020 Tao X, Xu T, Kempher ML, Liu J, Zhou J. Precise promoter integration improves cellulose bioconversion and thermotolerance in Clostridium cellulolyticum. Metabolic Engineering. PMID 32294528 DOI: 10.1016/J.Ymben.2020.03.013  0.8
2020 Zhang B, Ning D, Van Nostrand JD, Sun C, Yang Y, Zhou J, Wen X. The biogeography and assembly of microbial communities in wastewater treatment plants in China. Environmental Science & Technology. PMID 32259441 DOI: 10.1021/Acs.Est.9B07950  0.84
2020 Tian R, Ning D, He Z, Zhang P, Spencer SJ, Gao S, Shi W, Wu L, Zhang Y, Yang Y, Adams BG, Rocha AM, Detienne BL, Lowe KA, Joyner DC, ... ... Zhou J, et al. Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity. Microbiome. 8: 51. PMID 32252814 DOI: 10.1186/S40168-020-00825-W  0.84
2020 Wu R, Chai B, Cole JR, Gunturu SK, Guo X, Tian R, Gu JD, Zhou J, Tiedje JM. Targeted assemblies of cas1 suggest CRISPR-Cas's response to soil warming. The Isme Journal. PMID 32221408 DOI: 10.1038/S41396-020-0635-1  0.76
2020 Huang Z, Zeng S, Xiong J, Hou D, Zhou R, Xing C, Wei D, Deng X, Yu L, Wang H, Deng Z, Weng S, Kriengkrai S, Ning D, Zhou J, et al. Microecological Koch's postulates reveal that intestinal microbiota dysbiosis contributes to shrimp white feces syndrome. Microbiome. 8: 32. PMID 32156316 DOI: 10.1186/S40168-020-00802-3  0.72
2020 Zhou Y, Lin L, Wang H, Zhang Z, Zhou J, Jiao N. Development of a CRISPR/Cas9n-based tool for metabolic engineering of Pseudomonas putida for ferulic acid-to-polyhydroxyalkanoate bioconversion. Communications Biology. 3: 98. PMID 32139868 DOI: 10.1038/s42003-020-0824-5  0.68
2020 Liang Y, Xiao X, Nuccio EE, Yuan M, Zhang N, Xue K, Cohan F, Zhou J, Sun B. Differentiation strategies of soil rare and abundant microbial taxa in response to changing climatic regimes. Environmental Microbiology. PMID 32067386 DOI: 10.1111/1462-2920.14945  0.76
2020 Nuccio EE, Starr E, Karaoz U, Brodie EL, Zhou J, Tringe SG, Malmstrom RR, Woyke T, Banfield JF, Firestone MK, Pett-Ridge J. Niche differentiation is spatially and temporally regulated in the rhizosphere. The Isme Journal. PMID 31953507 DOI: 10.1038/S41396-019-0582-X  0.56
2020 Feng J, Wang C, Lei J, Yang Y, Yan Q, Zhou X, Tao X, Ning D, Yuan MM, Qin Y, Shi ZJ, Guo X, He Z, Van Nostrand JD, Wu L, ... ... Zhou J, et al. Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community. Microbiome. 8: 3. PMID 31952472 DOI: 10.1186/S40168-019-0778-3  0.84
2020 Wu L, Shan X, Chen S, Zhang Q, Qi Q, Qin Z, Yin H, Zhou J, He Q, Yang Y. Progressive Microbial Community Networks with Incremental Organic Loading Rates Underlie Higher Anaerobic Digestion Performance. Msystems. 5. PMID 31911462 DOI: 10.1128/mSystems.00357-19  0.84
2020 Hu A, Wang J, Sun H, Niu B, Si G, Wang J, Yeh CF, Zhu X, Lu X, Zhou J, Yang Y, Ren M, Hu Y, Dong H, Zhang G. Mountain biodiversity and ecosystem functions: interplay between geology and contemporary environments. The Isme Journal. PMID 31896789 DOI: 10.1038/S41396-019-0574-X  0.84
2020 Zhao M, Cong J, Cheng J, Qi Q, Sheng Y, Ning D, Lu H, Wyckoff KN, Deng Y, Li D, Zhou J, Zhang Y. Soil Microbial Community Assembly and Interactions Are Constrained by Nitrogen and Phosphorus in Broadleaf Forests of Southern China Forests. 11: 285. DOI: 10.3390/F11030285  0.84
2020 Chen Q, Niu B, Hu Y, Wang J, Lei T, Xu‐Ri, Zhou J, Xi C, Zhang G. Multilevel Nitrogen Additions Alter Chemical Composition and Turnover of the Labile Fraction Soil Organic Matter via Effects on Vegetation and Microorganisms Journal of Geophysical Research. 125. DOI: 10.1029/2019Jg005316  0.72
2020 Sher Y, Baker NR, Herman D, Fossum C, Hale L, Zhang X, Nuccio E, Saha M, Zhou J, Pett-Ridge J, Firestone M. Corrigendum to “Microbial extracellular polysaccharide production and aggregate stability controlled by Switchgrass (Panicum virgatum) root biomass and soil water potential” [Soil Biology and Biochemistry 143 (2020) 107741] Soil Biology & Biochemistry. 148: 107907. DOI: 10.1016/J.Soilbio.2020.107907  0.8
2020 Tu Q, Yan Q, Deng Y, Michaletz ST, Buzzard V, Weiser MD, Waide R, Ning D, Wu L, He Z, Zhou J. Biogeographic patterns of microbial co-occurrence ecological networks in six American forests Soil Biology & Biochemistry. 148: 107897. DOI: 10.1016/J.Soilbio.2020.107897  0.8
2020 Pressler Y, Zhou J, He Z, Nostrand JDV, Smith AP. Post-agricultural tropical forest regeneration shifts soil microbial functional potential for carbon and nutrient cycling Soil Biology & Biochemistry. 145: 107784. DOI: 10.1016/J.Soilbio.2020.107784  0.8
2020 Wan X, Gao Q, Zhao J, Feng J, Nostrand JDv, Yang Y, Zhou J. Biogeographic patterns of microbial association networks in paddy soil within Eastern China Soil Biology & Biochemistry. 142: 107696. DOI: 10.1016/J.Soilbio.2019.107696  0.84
2020 Wang Y, Zheng H, Yang Y, Liang Y, Zhou J, He Z, Chen F, Ouyang Z. Microbial functional gene diversity in natural secondary forest Ultisols Acta Oecologica-International Journal of Ecology. 105: 103575. DOI: 10.1016/J.Actao.2020.103575  0.84
2020 Cheng J, Zhao M, Cong J, Qi Q, Xiao Y, Cong W, Deng Y, Zhou J, Zhang Y. Soil pH exerts stronger impacts than vegetation type and plant diversity on soil bacterial community composition in subtropical broad-leaved forests Plant and Soil. 450: 273-286. DOI: 10.1007/S11104-020-04507-2  0.84
2020 Li Y, Li Y, Yang M, Chang SX, Qi J, Tang C, Wen Z, Hong Z, Yang T, Ma Z, Gao Q, Zhou J, Yang Y, Yang Y. Changes of microbial functional capacities in the rhizosphere contribute to aluminum tolerance by genotype-specific soybeans in acid soils Biology and Fertility of Soils. 56: 771-783. DOI: 10.1007/S00374-020-01451-2  0.84
2020 Wang Y, Zheng H, Chen F, Zeng J, Zhou J, Ouyang Z. Stabilities of soil organic carbon and carbon cycling genes are higher in natural secondary forests than in artificial plantations in southern China Land Degradation & Development. DOI: 10.1002/Ldr.3649  0.72
2019 Gao Z, Van Nostrand JD, Zhou J, Zhong W, Chen K, Guo J. Anti-listeria Activities of Linalool and Its Mechanism Revealed by Comparative Transcriptome Analysis. Frontiers in Microbiology. 10: 2947. PMID 31921091 DOI: 10.3389/Fmicb.2019.02947  0.72
2019 Gao Q, Dong Q, Wu L, Yang Y, Hale L, Qin Z, Xie C, Zhang Q, Van Nostrand JD, Zhou J. Environmental antibiotics drives the genetic functions of resistome dynamics. Environment International. 135: 105398. PMID 31862641 DOI: 10.1016/J.Envint.2019.105398  0.84
2019 Wang P, Li SP, Yang X, Zhou J, Shu W, Jiang L. Mechanisms of soil bacterial and fungal community assembly differ among and within islands. Environmental Microbiology. PMID 31736222 DOI: 10.1111/1462-2920.14864  0.64
2019 Zhang B, Ning D, Yang Y, Van Nostrand JD, Zhou J, Wen X. Biodegradability of wastewater determines microbial assembly mechanisms in full-scale wastewater treatment plants. Water Research. 169: 115276. PMID 31731242 DOI: 10.1016/J.Watres.2019.115276  0.84
2019 Wu L, Ning D, Zhang B, Li Y, Zhang P, Shan X, Zhang Q, Brown MR, Li Z, Van Nostrand JD, Ling F, Xiao N, Zhang Y, Vierheilig J, Wells GF, ... ... Zhou J, et al. Author Correction: Global diversity and biogeography of bacterial communities in wastewater treatment plants. Nature Microbiology. PMID 31728072 DOI: 10.1038/S41564-019-0617-0  0.84
2019 Escalas A, Hale L, Voordeckers JW, Yang Y, Firestone MK, Alvarez-Cohen L, Zhou J. Microbial functional diversity: From concepts to applications. Ecology and Evolution. 9: 12000-12016. PMID 31695904 DOI: 10.1002/Ece3.5670  0.84
2019 Song D, Chen X, Xu M, Hai R, Zhou A, Tian R, Van Nostrand JD, Kempher ML, Guo J, Sun G, Zhou J. Adaptive Evolution of C1 in Electronic Waste Contaminated River Sediment. Frontiers in Microbiology. 10: 2263. PMID 31632374 DOI: 10.3389/Fmicb.2019.02263  0.72
2019 Buzzard V, Michaletz ST, Deng Y, He Z, Ning D, Shen L, Tu Q, Van Nostrand JD, Voordeckers JW, Wang J, Weiser MD, Kaspari M, Waide RB, Zhou J, Enquist BJ. Author Correction: Continental scale structuring of forest and soil diversity via functional traits. Nature Ecology & Evolution. PMID 31582820 DOI: 10.1038/S41559-019-1014-Z  0.8
2019 Yang S, Zheng Q, Yang Y, Yuan M, Ma X, Chiariello NR, Docherty KM, Field CB, Gutknecht JLM, Hungate BA, Niboyet A, Le Roux X, Zhou J. Fire affects the taxonomic and functional composition of soil microbial communities, with cascading effects on grassland ecosystem functioning. Global Change Biology. PMID 31562826 DOI: 10.1111/Gcb.14852  0.84
2019 Huang R, McGrath SP, Hirsch PR, Clark IM, Storkey J, Wu L, Zhou J, Liang Y. Plant-microbe networks in soil are weakened by century-long use of inorganic fertilizers. Microbial Biotechnology. PMID 31536680 DOI: 10.1111/1751-7915.13487  0.8
2019 Buzzard V, Michaletz ST, Deng Y, He Z, Ning D, Shen L, Tu Q, Van Nostrand JD, Voordeckers JW, Wang J, Weiser MD, Kaspari M, Waide RB, Zhou J, Enquist BJ. Continental scale structuring of forest and soil diversity via functional traits. Nature Ecology & Evolution. PMID 31427732 DOI: 10.1038/S41559-019-0954-7  0.8
2019 Ning D, Deng Y, Tiedje JM, Zhou J. A general framework for quantitatively assessing ecological stochasticity. Proceedings of the National Academy of Sciences of the United States of America. PMID 31391302 DOI: 10.1073/Pnas.1904623116  0.72
2019 Zelaya AJ, Parker AE, Bailey KL, Zhang P, Van Nostrand J, Ning D, Elias DA, Zhou J, Hazen TC, Arkin AP, Fields MW. High spatiotemporal variability of bacterial diversity over short time scales with unique hydrochemical associations within a shallow aquifer. Water Research. 164: 114917. PMID 31387058 DOI: 10.1016/J.Watres.2019.114917  0.56
2019 Hale L, Feng W, Yin H, Guo X, Zhou X, Bracho R, Pegoraro E, Penton CR, Wu L, Cole J, Konstantinidis KT, Luo Y, Tiedje JM, Schuur EAG, Zhou J. Tundra microbial community taxa and traits predict decomposition parameters of stable, old soil organic carbon. The Isme Journal. PMID 31384013 DOI: 10.1038/S41396-019-0485-X  0.8
2019 Day LA, De León KB, Kempher ML, Zhou J, Wall JD. Complete Genome Sequence of Desulfovibrio desulfuricans IC1, a Sulfonate-Respiring Anaerobe. Microbiology Resource Announcements. 8. PMID 31371536 DOI: 10.1128/MRA.00456-19  0.68
2019 Dai J, Liu Y, Liu S, Li S, Gao N, Wang J, Zhou J, Qiu D. Differential gene content and gene expression for bacterial evolution and speciation of Shewanella in terms of biosynthesis of heme and heme-requiring proteins. Bmc Microbiology. 19: 173. PMID 31362704 DOI: 10.1186/S12866-019-1549-9  0.72
2019 Johnston ER, Hatt JK, He Z, Wu L, Guo X, Luo Y, Schuur EAG, Tiedje JM, Zhou J, Konstantinidis KT. Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths. Proceedings of the National Academy of Sciences of the United States of America. PMID 31285347 DOI: 10.1073/Pnas.1901307116  0.8
2019 Tian J, Dungait JAJ, Lu X, Yang Y, Hartley IP, Zhang W, Mo J, Yu G, Zhou J, Kuzyakov Y. Long-term nitrogen addition modifies microbial composition and functions for slow carbon cycling and increased sequestration in tropical forest soil. Global Change Biology. PMID 31273887 DOI: 10.1111/Gcb.14750  0.84
2019 Li Y, Wang K, Zhang B, Tu Q, Yao Y, Cui B, Ren B, He J, Shen X, Van Nostrand JD, Zhou J, Shi W, Xiao L, Lu C, Zhou X. Salivary mycobiome dysbiosis and its potential impact on bacteriome shifts and host immunity in oral lichen planus. International Journal of Oral Science. 11: 13. PMID 31263096 DOI: 10.1038/S41368-019-0045-2  0.84
2019 Zhu CM, Zhang JY, Guan R, Hale L, Chen N, Li M, Lu ZH, Ge QY, Yang YF, Zhou JZ, Chen T. Alternate succession of aggregate-forming cyanobacterial genera correlated with their attached bacteria by co-pathways. The Science of the Total Environment. 688: 867-879. PMID 31255824 DOI: 10.1016/J.Scitotenv.2019.06.150  0.68
2019 Shi Z, Yin H, Van Nostrand JD, Voordeckers JW, Tu Q, Deng Y, Yuan M, Zhou A, Zhang P, Xiao N, Ning D, He Z, Wu L, Zhou J. Functional Gene Array-Based Ultrasensitive and Quantitative Detection of Microbial Populations in Complex Communities. Msystems. 4. PMID 31213523 DOI: 10.1128/mSystems.00296-19  0.8
2019 Shi X, Zhao J, Chen L, Zuo J, Yang Y, Zhang Q, Qin Z, Zhou J. Genomic dynamics of full-scale temperature-phased anaerobic digestion treating waste activated sludge: Focusing on temperature differentiation. Waste Management (New York, N.Y.). 87: 621-628. PMID 31109563 DOI: 10.1016/J.Wasman.2019.02.041  0.84
2019 Wu L, Ning D, Zhang B, Li Y, Zhang P, Shan X, Zhang Q, Brown M, Li Z, Van Nostrand JD, Ling F, Xiao N, Zhang Y, Vierheilig J, Wells GF, ... ... Zhou J, et al. Global diversity and biogeography of bacterial communities in wastewater treatment plants. Nature Microbiology. PMID 31086312 DOI: 10.1038/S41564-019-0426-5  0.84
2019 Zhao M, Lu X, Zhao H, Yang Y, Hale L, Gao Q, Liu W, Guo J, Li Q, Zhou J, Wan F. Ageratina adenophora invasions are associated with microbially mediated differences in biogeochemical cycles. The Science of the Total Environment. 677: 47-56. PMID 31051382 DOI: 10.1016/J.Scitotenv.2019.04.330  0.84
2019 Gao SH, Ho JY, Fan L, Nouwens A, Hoelzle RD, Schulz B, Guo J, Zhou J, Yuan Z, Bond PL. A comparative proteomic analysis of Desulfovibrio vulgaris Hildenborough in response to the antimicrobial agent free nitrous acid. The Science of the Total Environment. 672: 625-633. PMID 30974354 DOI: 10.1016/J.Scitotenv.2019.03.442  0.56
2019 Yang S, Wu H, He K, Yan T, Zhou J, Zhao LL, Sun JL, Lian WQ, Zhang DM, Du ZJ, Luo W, He Z, Ye X, Li SJ. Response of AMP-activated protein kinase and lactate metabolism of largemouth bass (Micropterus salmoides) under acute hypoxic stress. The Science of the Total Environment. 666: 1071-1079. PMID 30970473 DOI: 10.1016/J.Scitotenv.2019.02.236  0.8
2019 Guo X, Zhou X, Hale L, Yuan M, Ning D, Feng J, Shi Z, Li Z, Feng B, Gao Q, Wu L, Shi W, Zhou A, Fu Y, Wu L, ... ... Zhou J, et al. Climate warming accelerates temporal scaling of grassland soil microbial biodiversity. Nature Ecology & Evolution. PMID 30911147 DOI: 10.1038/S41559-019-0848-8  0.84
2019 Zhang Q, Wang M, Ma X, Gao Q, Wang T, Shi X, Zhou J, Zuo J, Yang Y. High variations of methanogenic microorganisms drive full-scale anaerobic digestion process. Environment International. 126: 543-551. PMID 30852441 DOI: 10.1016/J.Envint.2019.03.005  0.84
2019 Feng J, Penton CR, He Z, Van Nostrand JD, Yuan MM, Wu L, Wang C, Qin Y, Shi ZJ, Guo X, Schuur EAG, Luo Y, Bracho R, Konstantinidis KT, Cole JR, ... ... Zhou J, et al. Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils. Mbio. 10. PMID 30808694 DOI: 10.1128/Mbio.02521-18  0.84
2019 Zhao M, Sun B, Wu L, Wang F, Wen C, Wang M, Liang Y, Hale L, Zhou J, Yang Y. Dissimilar responses of fungal and bacterial communities to soil transplantation simulating abrupt climate changes. Molecular Ecology. PMID 30788871 DOI: 10.1111/Mec.15053  0.84
2019 Ma X, Zhang Q, Zheng M, Gao Y, Yuan T, Hale L, Van Nostrand JD, Zhou J, Wan S, Yang Y. Microbial functional traits are sensitive indicators of mild disturbance by lamb grazing. The Isme Journal. PMID 30700789 DOI: 10.1038/S41396-019-0354-7  0.84
2019 Yang S, Zheng Q, Yuan M, Shi Z, Chiariello NR, Docherty KM, Dong S, Field CB, Gu Y, Gutknecht J, Hungate BA, Le Roux X, Ma X, Niboyet A, Yuan T, ... Zhou J, et al. Long-term elevated CO shifts composition of soil microbial communities in a Californian annual grassland, reducing growth and N utilization potentials. The Science of the Total Environment. 652: 1474-1481. PMID 30586832 DOI: 10.1016/J.Scitotenv.2018.10.353  0.84
2019 Wang P, Chen Y, Sun Y, Tan S, Zhang S, Wang Z, Zhou J, Zhang G, Shu W, Luo C, Kuang J. Distinct biogeography of different fungal guilds and their associations with plant species richness in forest ecosystems Frontiers in Ecology and Evolution. 7: 216. DOI: 10.3389/Fevo.2019.00216  0.76
2019 Gao Q, Yang Y, Feng J, Tian R, Guo X, Ning D, Hale L, Wang M, Cheng J, Wu L, Zhao M, Zhao J, Wu L, Qin Y, Qi Q, ... ... Zhou J, et al. The spatial scale dependence of diazotrophic and bacterial community assembly in paddy soil Global Ecology and Biogeography. 28: 1093-1105. DOI: 10.1111/Geb.12917  0.84
2019 Xia X, Wang Y, Yang Y, Luo T, Nostrand JDV, Zhou J, Jiao N, Zhang R. Ocean Acidification Regulates the Activity, Community Structure, and Functional Potential of Heterotrophic Bacterioplankton in an Oligotrophic Gyre Journal of Geophysical Research. 124: 1001-1017. DOI: 10.1029/2018Jg004707  0.84
2018 Reyes VC, Merino N, Gedalanga PB, Van Nostrand JD, Keely SP, De Long SK, Zhou J, Mahendra S. Differential Sensitivity of Wetland-Derived Nitrogen Cycling Microorganisms to Copper Nanoparticles. Acs Sustainable Chemistry & Engineering. 6: 11642-11652. PMID 33354438  0.72
2018 Wang XB, Yao J, Zhang HY, Wang XG, Li KH, Lü XT, Wang ZW, Zhou JZ, Han XG. Environmental and spatial variables determine the taxonomic but not functional structure patterns of microbial communities in alpine grasslands. The Science of the Total Environment. 654: 960-968. PMID 30453265 DOI: 10.1016/J.Scitotenv.2018.11.138  0.68
2018 Liang B, Ma J, Cai W, Li Z, Liu W, Qi M, Zhao Y, Ma X, Deng Y, Wang A, Zhou J. Response of chloramphenicol-reducing biocathode resistome to continuous electrical stimulation. Water Research. 148: 398-406. PMID 30399554 DOI: 10.1016/J.Watres.2018.10.073  0.72
2018 Yu H, Deng Y, He Z, Van Nostrand JD, Wang S, Jin D, Wang A, Wu L, Wang D, Tai X, Zhou J. Elevated CO and Warming Altered Grassland Microbial Communities in Soil Top-Layers. Frontiers in Microbiology. 9: 1790. PMID 30154760 DOI: 10.3389/Fmicb.2018.01790  0.8
2018 Yang SS, Wu WM, Brandon AM, Fan HQ, Receveur JP, Li Y, Wang ZY, Fan R, McClellan RL, Gao SH, Ning D, Phillips DH, Peng BY, Wang H, Cai SY, ... ... Zhou J, et al. Ubiquity of polystyrene digestion and biodegradation within yellow mealworms, larvae of Tenebrio molitor Linnaeus (Coleoptera: Tenebrionidae). Chemosphere. 212: 262-271. PMID 30145418 DOI: 10.1016/J.Chemosphere.2018.08.078  0.8
2018 Zeng XX, Wang R, Xi XQ, Li B, Zhou J. Terahertz rare-earth orthoferrite metamaterials by 3-D direct writing technology. Optics Express. 26: 17056-17065. PMID 30119523 DOI: 10.1364/Oe.26.017056  0.84
2018 Liang J, Zhou Z, Huo C, Shi Z, Cole JR, Huang L, Konstantinidis KT, Li X, Liu B, Luo Z, Penton CR, Schuur EAG, Tiedje JM, Wang YP, Wu L, ... ... Zhou J, et al. More replenishment than priming loss of soil organic carbon with additional carbon input. Nature Communications. 9: 3175. PMID 30093611 DOI: 10.1038/S41467-018-05667-7  0.8
2018 Deng Y, Ning D, Qin Y, Xue K, Wu L, He Z, Yin H, Liang Y, Buzzard V, Michaletz ST, Zhou J. Spatial scaling of forest soil microbial communities across a temperature gradient. Environmental Microbiology. PMID 30051570 DOI: 10.1111/1462-2920.14303  0.8
2018 Wang M, Ding J, Sun B, Zhang J, Wyckoff KN, Yue H, Zhao M, Liang Y, Wang X, Wen C, Zhou J, Yang Y. Microbial responses to inorganic nutrient amendment overridden by warming: Consequences on soil carbon stability. Environmental Microbiology. PMID 30051561 DOI: 10.1111/1462-2920.14239  0.84
2018 Whitman T, Neurath R, Perera A, Chu-Jacoby I, Ning D, Zhou J, Nico P, Pett-Ridge J, Firestone M. Microbial community assembly differs across minerals in a rhizosphere microcosm. Environmental Microbiology. PMID 30047192 DOI: 10.1111/1462-2920.14366  0.56
2018 Xue K, Zhou J, Van Nostrand J, Mench M, Bes C, Giagnoni L, Renella G. Functional activity and functional gene diversity of a Cu-contaminated soil remediated by aided phytostabilization using compost, dolomitic limestone and a mixed tree stand. Environmental Pollution (Barking, Essex : 1987). 242: 229-238. PMID 29980041 DOI: 10.1016/J.Envpol.2018.06.057  0.72
2018 Wu X, Wu L, Liu Y, Zhang P, Li Q, Zhou J, Hess NJ, Hazen TC, Yang W, Chakraborty R. Microbial Interactions With Dissolved Organic Matter Drive Carbon Dynamics and Community Succession. Frontiers in Microbiology. 9: 1234. PMID 29937762 DOI: 10.3389/Fmicb.2018.01234  0.8
2018 Guo X, Zhou X, Hale L, Yuan M, Feng J, Ning D, Shi Z, Qin Y, Liu F, Wu L, He Z, Van Nostrand JD, Liu X, Luo Y, Tiedje JM, ... Zhou J, et al. Taxonomic and Functional Responses of Soil Microbial Communities to Annual Removal of Aboveground Plant Biomass. Frontiers in Microbiology. 9: 954. PMID 29904372 DOI: 10.3389/Fmicb.2018.00954  0.8
2018 Shi Z, Lin Y, Wilcox KR, Souza L, Jiang L, Jiang J, Jung CG, Xu X, Yuan M, Guo X, Wu L, Zhou J, Luo Y. Successional change in species composition alters climate sensitivity of grassland productivity. Global Change Biology. PMID 29851205 DOI: 10.1111/Gcb.14333  0.8
2018 Liang J, Xia J, Shi Z, Jiang L, Ma S, Lu X, Mauritz M, Natali SM, Pegoraro E, Penton CR, Plaza C, Salmon VG, Celis G, Cole JR, Konstantinidis KT, ... ... Zhou J, et al. Biotic responses buffer warming-induced soil organic carbon loss in Arctic tundra. Global Change Biology. PMID 29802797 DOI: 10.1111/Gcb.14325  0.68
2018 Brandon AM, Gao SH, Tian R, Ning D, Yang S, Zhou J, Wu WM, Criddle CS. Biodegradation of polyethylene and plastic mixtures in mealworms (larvae of Tenebrio molitor) and effects on the gut microbiome. Environmental Science & Technology. PMID 29763555 DOI: 10.1021/Acs.Est.8B02301  0.56
2018 Dignam BEA, O'Callaghan M, Condron LM, Kowalchuk GA, Van Nostrand JD, Zhou J, Wakelin SA. Effect of land use and soil organic matter quality on the structure and function of microbial communities in pastoral soils: Implications for disease suppression. Plos One. 13: e0196581. PMID 29734390 DOI: 10.1371/Journal.Pone.0196581  0.72
2018 Christensen GA, Moon J, Veach AM, Mosher JJ, Wymore AM, van Nostrand JD, Zhou J, Hazen TC, Arkin AP, Elias DA. Use of in-field bioreactors demonstrate groundwater filtration influences planktonic bacterial community assembly, but not biofilm composition. Plos One. 13: e0194663. PMID 29558522 DOI: 10.1371/Journal.Pone.0194663  0.72
2018 Xing W, Li J, Li P, Wang C, Cao Y, Li D, Yang Y, Zhou J, Zuo J. Effects of residual organics in municipal wastewater on hydrogenotrophic denitrifying microbial communities. Journal of Environmental Sciences (China). 65: 262-270. PMID 29548397 DOI: 10.1016/J.Jes.2017.03.001  0.84
2018 Vishnivetskaya TA, Hu H, Van Nostrand JD, Wymore AM, Xu X, Qiu G, Feng X, Zhou J, Brown SD, Brandt CC, Podar M, Gu B, Elias DA. Microbial community structure with trends in methylation gene diversity and abundance in mercury-contaminated rice paddy soils in Guizhou, China. Environmental Science. Processes & Impacts. PMID 29504614 DOI: 10.1039/C7Em00558J  0.76
2018 Xiao J, Yu F, Zhu W, Xu C, Zhang K, Luo Y, Tiedje JM, Zhou J, Cheng L. Comment on "The whole-soil carbon flux in response to warming". Science (New York, N.Y.). 359. PMID 29472453 DOI: 10.1126/Science.Aao0218  0.68
2018 He Z, Zhang P, Wu L, Rocha AM, Tu Q, Shi Z, Wu B, Qin Y, Wang J, Yan Q, Curtis D, Ning D, Van Nostrand JD, Wu L, Yang Y, ... ... Zhou J, et al. Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning. Mbio. 9. PMID 29463661 DOI: 10.1128/Mbio.02435-17  0.84
2018 Chen C, Hemme C, Beleno J, Shi ZJ, Ning D, Qin Y, Tu Q, Jorgensen M, He Z, Wu L, Zhou J. Oral microbiota of periodontal health and disease and their changes after nonsurgical periodontal therapy. The Isme Journal. PMID 29339824 DOI: 10.1038/S41396-017-0037-1  0.8
2018 Tian J, He N, Hale L, Niu S, Yu G, Liu Y, Blagodatskaya E, Kuzyakov Y, Gao Q, Zhou J. Soil organic matter availability and climate drive latitudinal patterns in bacterial diversity from tropical to cold temperate forests Functional Ecology. 32: 61-70. DOI: 10.1111/1365-2435.12952  0.72
2018 Tian J, He N, Kong W, Deng Y, Feng K, Green SM, Wang X, Zhou J, Kuzyakov Y, Yu G. Deforestation decreases spatial turnover and alters the network interactions in soil bacterial communities Soil Biology & Biochemistry. 123: 80-86. DOI: 10.1016/J.Soilbio.2018.05.007  0.84
2018 Li Y, Li Y, Chang SX, Yang Y, Fu S, Jiang P, Luo Y, Yang M, Chen Z, Hu S, Zhao M, Liang X, Xu Q, Zhou G, Zhou J. Biochar reduces soil heterotrophic respiration in a subtropical plantation through increasing soil organic carbon recalcitrancy and decreasing carbon-degrading microbial activity Soil Biology & Biochemistry. 122: 173-185. DOI: 10.1016/J.Soilbio.2018.04.019  0.84
2018 Hou Y, Yang C, Zhou A, Liu W, Liu C, Cai W, Zhou J, Wang A. Microbial community response and SDS-PAGE reveal possible mechanism of waste activated sludge acidification enhanced by microaeration coupled thermophilic pretreatment Process Biochemistry. 64: 1-8. DOI: 10.1016/J.Procbio.2017.09.010  0.6
2017 Gu Y, Van Nostrand JD, Wu L, He Z, Qin Y, Zhao FJ, Zhou J. Correction: Bacterial community and arsenic functional genes diversity in arsenic contaminated soils from different geographic locations. Plos One. 12: e0189656. PMID 29216322 DOI: 10.1371/journal.pone.0189656  0.8
2017 Yang SS, Brandon AM, Andrew Flanagan JC, Yang J, Ning D, Cai SY, Fan HQ, Wang ZY, Ren J, Benbow E, Ren NQ, Waymouth RM, Zhou J, Criddle CS, Wu WM. Biodegradation of polystyrene wastes in yellow mealworms (larvae of Tenebrio molitor Linnaeus): Factors affecting biodegradation rates and the ability of polystyrene-fed larvae to complete their life cycle. Chemosphere. 191: 979-989. PMID 29145143 DOI: 10.1016/J.Chemosphere.2017.10.117  0.56
2017 Zhou A, Lau R, Baran R, Ma J, von Netzer F, Shi W, Gorman-Lewis D, Kempher ML, He Z, Qin Y, Shi Z, Zane GM, Wu L, Bowen BP, Northen TR, ... ... Zhou J, et al. Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, Desulfovibrio vulgaris. Mbio. 8. PMID 29138306 DOI: 10.1128/Mbio.01780-17  0.8
2017 Zhang Y, Yang Q, Ling J, Van Nostrand JD, Shi Z, Zhou J, Dong J. Diversity and Structure of Diazotrophic Communities in Mangrove Rhizosphere, Revealed by High-Throughput Sequencing. Frontiers in Microbiology. 8: 2032. PMID 29093705 DOI: 10.3389/Fmicb.2017.02032  0.84
2017 Yu H, He Z, Wang A, Xie J, Wu L, Van Nostrand JD, Jin D, Shao Z, Schadt CW, Zhou J, Deng Y. Divergent responses of forest soil microbial communities under elevated CO2 in different depths of upper soil layers. Applied and Environmental Microbiology. PMID 29079614 DOI: 10.1128/Aem.01694-17  0.8
2017 Zhou J, Ning D. Stochastic Community Assembly: Does It Matter in Microbial Ecology? Microbiology and Molecular Biology Reviews : Mmbr. 81. PMID 29021219 DOI: 10.1128/Mmbr.00002-17  0.56
2017 Yang Z, Yang S, Van Nostrand JD, Zhou J, Fang W, Qi Q, Liu Y, Wullschleger SD, Liang L, Graham DE, Yang Y, Gu B. Microbial Community and Functional Gene Changes in Arctic Tundra Soils in a Microcosm Warming Experiment. Frontiers in Microbiology. 8: 1741. PMID 28974946 DOI: 10.3389/Fmicb.2017.01741  0.84
2017 Xu T, Li Y, He Z, Van Nostrand JD, Zhou J. Cas9 Nickase-Assisted RNA Repression Enables Stable and Efficient Manipulation of Essential Metabolic Genes in Clostridium cellulolyticum. Frontiers in Microbiology. 8: 1744. PMID 28936208 DOI: 10.3389/Fmicb.2017.01744  0.8
2017 He J, Tu Q, Ge Y, Qin Y, Cui B, Hu X, Wang Y, Deng Y, Wang K, Van Nostrand JD, Li J, Zhou J, Li Y, Zhou X. Taxonomic and Functional Analyses of the Supragingival Microbiome from Caries-Affected and Caries-Free Hosts. Microbial Ecology. PMID 28932895 DOI: 10.1007/S00248-017-1056-1  0.8
2017 Kuang J, Cadotte MW, Chen Y, Shu H, Liu J, Chen L, Hua Z, Shu W, Zhou J, Huang L. Conservation of Species- and Trait-Based Modeling Network Interactions in Extremely Acidic Microbial Community Assembly. Frontiers in Microbiology. 8: 1486. PMID 28848508 DOI: 10.3389/Fmicb.2017.01486  0.76
2017 Wu L, Yang Y, Chen S, Jason Shi Z, Zhao M, Zhu Z, Yang S, Qu Y, Ma Q, He Z, Zhou J, He Q. Microbial functional trait of rRNA operon copy numbers increases with organic levels in anaerobic digesters. The Isme Journal. PMID 28841202 DOI: 10.1038/Ismej.2017.135  0.84
2017 Sheng Z, Van Nostrand JD, Zhou J, Liu Y. Contradictory effects of silver nanoparticles on activated sludge wastewater treatment. Journal of Hazardous Materials. 341: 448-456. PMID 28830010 DOI: 10.1016/J.Jhazmat.2017.07.051  0.72
2017 Yuan MM, Zhang J, Xue K, Wu L, Deng Y, Deng J, Hale L, Zhou X, He Z, Yang Y, Van Nostrand JD, Schuur EAG, Konstantinidis KT, Penton CR, Cole JR, ... ... Zhou J, et al. Microbial functional diversity covaries with permafrost thaw-induced environmental heterogeneity in tundra soil. Global Change Biology. PMID 28715138 DOI: 10.1111/Gcb.13820  0.84
2017 Wang Y, Zhang R, He Z, Van Nostrand JD, Zheng Q, Zhou J, Jiao N. Functional Gene Diversity and Metabolic Potential of the Microbial Community in an Estuary-Shelf Environment. Frontiers in Microbiology. 8: 1153. PMID 28680420 DOI: 10.3389/Fmicb.2017.01153  0.8
2017 Yan Z, He Y, Cai H, Van Nostrand JD, He Z, Zhou J, Krumholz LR, Jiang HL. Interconnection of key microbial functional genes for enhanced benzo[a]pyrene biodegradation in sediments by microbial electrochemistry. Environmental Science & Technology. PMID 28677976 DOI: 10.1021/Acs.Est.7B00209  0.8
2017 Li P, Jiang Z, Wang Y, Deng Y, Van Nostrand JD, Yuan T, Liu H, Wei D, Zhou J. Analysis of the functional gene structure and metabolic potential of microbial community in high arsenic groundwater. Water Research. 123: 268-276. PMID 28672211 DOI: 10.1016/J.Watres.2017.06.053  0.72
2017 Qi Q, Zhao M, Wang S, Ma X, Wang Y, Gao Y, Lin Q, Li X, Gu B, Li G, Zhou J, Yang Y. The Biogeographic Pattern of Microbial Functional Genes along an Altitudinal Gradient of the Tibetan Pasture. Frontiers in Microbiology. 8: 976. PMID 28659870 DOI: 10.3389/Fmicb.2017.00976  0.84
2017 Escalas A, Troussellier M, Tong Y, Bouvier T, Bouvier C, Mouchet MA, Flores Hernandez D, Ramos Miranda J, Zhou J, Mouillot D. Functional diversity and redundancy across fish gut, sediment, and water bacterial communities. Environmental Microbiology. PMID 28618142 DOI: 10.1111/1462-2920.13822  0.4
2017 Feng W, Liang J, Hale LE, Jung CG, Chen J, Zhou J, Xu M, Yuan M, Wu L, Bracho R, Pegoraro E, Schuur EAG, Luo Y. Enhanced decomposition of stable soil organic carbon and microbial catabolic potentials by long-term field warming. Global Change Biology. PMID 28597589 DOI: 10.1111/Gcb.13755  0.8
2017 Zhou J, Deng Y, Shen L, Wen C, Yan Q, Ning D, Qin Y, Xue K, Wu L, He Z, Voordeckers JW, Van Nostrand JD, Buzzard V, Michaletz ST, Enquist BJ, et al. Correspondence: Reply to 'Analytical flaws in a continental-scale forest soil microbial diversity study'. Nature Communications. 8: 15583. PMID 28585533 DOI: 10.1038/Ncomms15583  0.84
2017 Ma X, Zhao C, Gao Y, Liu B, Wang T, Yuan T, Hale L, Van Nostrand JD, Wan S, Zhou J, Yang Y. Divergent taxonomic and functional responses of microbial communities to field simulation of aeolian soil erosion and deposition. Molecular Ecology. PMID 28570016 DOI: 10.1111/Mec.14194  0.84
2017 Zhang J, Gao Q, Zhang Q, Wang T, Yue H, Wu L, Shi J, Qin Z, Zhou J, Zuo J, Yang Y. Bacteriophage-prokaryote dynamics and interaction within anaerobic digestion processes across time and space. Microbiome. 5: 57. PMID 28569210 DOI: 10.1186/S40168-017-0272-8  0.84
2017 Wu L, Yang Y, Wang S, Yue H, Lin Q, Hu Y, He Z, Van Nostrand JD, Hale L, Li X, Gilbert JA, Zhou J. Alpine soil carbon is vulnerable to rapid microbial decomposition under climate cooling. The Isme Journal. PMID 28534876 DOI: 10.1038/Ismej.2017.75  0.84
2017 Kaspari M, Bujan J, Weiser MD, Ning D, Michaletz ST, Zhili H, Enquist BJ, Waide RB, Zhou J, Turner BL, Wright SJ. Biogeochemistry drives diversity in the prokaryotes, fungi, and invertebrates of a Panama forest. Ecology. PMID 28500769 DOI: 10.1002/Ecy.1895  0.56
2017 Yu D, Xia M, Zhang L, Song Y, Duan Y, Yuan T, Yao M, Wu L, Tian C, Wu Z, Li X, Zhou J, Qiu D. RpoN (σ(54)) is required for floc formation but not for extracellular polysaccharide biosynthesis in a floc-forming Aquincola tertiaricarbonis strain. Applied and Environmental Microbiology. PMID 28500044 DOI: 10.1128/Aem.00709-17  0.8
2017 Gu Y, D Van Nostrand J, Wu L, He Z, Qin Y, Zhao FJ, Zhou J. Bacterial community and arsenic functional genes diversity in arsenic contaminated soils from different geographic locations. Plos One. 12: e0176696. PMID 28475654 DOI: 10.1371/Journal.Pone.0176696  0.8
2017 Wen C, Wu L, Qin Y, Van Nostrand JD, Ning D, Sun B, Xue K, Liu F, Deng Y, Liang Y, Zhou J. Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform. Plos One. 12: e0176716. PMID 28453559 DOI: 10.1371/Journal.Pone.0176716  0.8
2017 Yan Q, Stegen JC, Yu Y, Deng Y, Li X, Wu S, Dai L, Zhang X, Li J, Wang C, Ni J, Li X, Hu H, Xiao F, Feng W, ... ... Zhou J, et al. Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China). Molecular Ecology. PMID 28437572 DOI: 10.1111/Mec.14151  0.8
2017 Cheng L, Zhang N, Yuan M, Xiao J, Qin Y, Deng Y, Tu Q, Xue K, Van Nostrand JD, Wu L, He Z, Zhou X, Leigh MB, Konstantinidis KT, Schuur EA, ... ... Zhou J, et al. Warming enhances old organic carbon decomposition through altering functional microbial communities. The Isme Journal. PMID 28430189 DOI: 10.1038/Ismej.2017.48  0.8
2017 Zhang Y, Liu X, Cong J, Lu H, Sheng Y, Wang X, Li D, Liu X, Yin H, Zhou J, Deng Y. The microbially-mediated soil organic carbon loss under degenerative succession in an alpine meadow. Molecular Ecology. PMID 28429833 DOI: 10.1111/Mec.14148  0.84
2017 Lyles CN, Parisi VA, Beasley WH, Van Nostrand JD, Zhou J, Suflita JM. Elucidation of the methanogenic potential from coalbed microbial communities amended with volatile fatty acids. Fems Microbiology Ecology. PMID 28369331 DOI: 10.1093/Femsec/Fix040  0.72
2017 Zhang P, He Z, Van Nostrand JD, Qin Y, Deng Y, Wu L, Tu Q, Wang J, Schadt CW, W Fields M, Hazen TC, Arkin AP, Stahl DA, Zhou J. Dynamic Succession of Groundwater Sulfate-Reducing Communities during Prolonged Reduction of Uranium in a Contaminated Aquifer. Environmental Science & Technology. PMID 28300407 DOI: 10.1021/Acs.Est.6B02980  0.8
2017 Wang XB, Lü XT, Yao J, Wang ZW, Deng Y, Cheng WX, Zhou JZ, Han XG. Habitat-specific patterns and drivers of bacterial β-diversity in China's drylands. The Isme Journal. PMID 28282041 DOI: 10.1038/Ismej.2017.11  0.72
2017 Yang S, Zhang Y, Cong J, Wang M, Zhao M, Lu H, Xie C, Yang C, Yuan T, Li D, Zhou J, Gu B, Yang Y. Variations of Soil Microbial Community Structures Beneath Broadleaved Forest Trees in Temperate and Subtropical Climate Zones. Frontiers in Microbiology. 8: 200. PMID 28239373 DOI: 10.3389/Fmicb.2017.00200  0.84
2017 Zeng F, Wang Z, Wang Y, Zhou J, Chen T. Large-scale 16S gene assembly using metagenomics shotgun sequences. Bioinformatics (Oxford, England). PMID 28158392 DOI: 10.1093/Bioinformatics/Btx018  0.72
2017 King AJ, Preheim SP, Bailey KL, Robeson MS, Roy Chowdhury T, Crable BR, Hurt RA, Mehlhorn TL, Lowe KA, Phelps TJ, Palumbo AV, Brandt CC, Brown SD, Podar M, Zhang P, ... ... Zhou J, et al. Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation. Environmental Science & Technology. PMID 28112946 DOI: 10.1021/Acs.Est.6B04751  0.56
2017 Li H, Yang S, Xu Z, Yan Q, Li X, Nostrand JDv, He Z, Yao F, Han X, Zhou J, Deng Y, Jiang Y. Responses of soil microbial functional genes to global changes are indirectly influenced by aboveground plant biomass variation Soil Biology & Biochemistry. 104: 18-29. DOI: 10.1016/J.Soilbio.2016.10.009  0.8
2017 Navarrete AA, Mellis EV, Escalas A, Lemos LN, Junior JL, Quaggio JA, Zhou J, Tsai SM. Zinc concentration affects the functional groups of microbial communities in sugarcane-cultivated soil Agriculture, Ecosystems & Environment. 236: 187-197. DOI: 10.1016/J.Agee.2016.12.009  0.4
2016 Penton CR, Yang C, Wu L, Wang Q, Zhang J, Liu F, Qin Y, Deng Y, Hemme CL, Zheng T, Schuur EA, Tiedje J, Zhou J. NifH-Harboring Bacterial Community Composition across an Alaskan Permafrost Thaw Gradient. Frontiers in Microbiology. 7: 1894. PMID 27933054 DOI: 10.3389/Fmicb.2016.01894  0.8
2016 Zhang Y, Yang Q, Ling J, Van Nostrand JD, Shi Z, Zhou J, Dong J. The Shifts of Diazotrophic Communities in Spring and Summer Associated with Coral Galaxea astreata, Pavona decussata, and Porites lutea. Frontiers in Microbiology. 7: 1870. PMID 27920768 DOI: 10.3389/Fmicb.2016.01870  0.84
2016 Zhang B, Xia Y, Wen X, Wang X, Yang Y, Zhou J, Zhang Y. The Composition and Spatial Patterns of Bacterial Virulence Factors and Antibiotic Resistance Genes in 19 Wastewater Treatment Plants. Plos One. 11: e0167422. PMID 27907117 DOI: 10.1371/Journal.Pone.0167422  0.84
2016 Wei ST, Lacap-Bugler DC, Lau MC, Caruso T, Rao S, de Los Rios A, Archer SK, Chiu JM, Higgins C, Van Nostrand JD, Zhou J, Hopkins DW, Pointing SB. Taxonomic and Functional Diversity of Soil and Hypolithic Microbial Communities in Miers Valley, McMurdo Dry Valleys, Antarctica. Frontiers in Microbiology. 7: 1642. PMID 27812351 DOI: 10.3389/Fmicb.2016.01642  0.72
2016 Hwang C, Copeland A, Lucas S, Lapidus A, Barry K, Detter JC, Glavina Del Rio T, Hammon N, Israni S, Dalin E, Tice H, Pitluck S, Chertkov O, Brettin T, Bruce D, ... ... Zhou J, et al. Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds. Genome Announcements. 4. PMID 27811105 DOI: 10.1128/Genomea.01226-16  0.48
2016 Tu Q, Li J, Shi Z, Chen Y, Lin L, Li J, Wang H, Yan J, Zhou Q, Li X, Li L, Zhou J, He Z. HuMiChip2 for strain level identification and functional profiling of human microbiomes. Applied Microbiology and Biotechnology. PMID 27734124 DOI: 10.1007/S00253-016-7910-0  0.76
2016 Sun Y, Shen YX, Liang P, Zhou J, Yang Y, Huang X. Multiple antibiotic resistance genes distribution in ten large-scale membrane bioreactors for municipal wastewater treatment. Bioresource Technology. 222: 100-106. PMID 27716561 DOI: 10.1016/J.Biortech.2016.09.117  0.76
2016 Webster TM, Reddy RR, Tan JY, Van Nostrand JD, Zhou J, Hayes KF, Raskin L. Anaerobic Disposal of Arsenic-Bearing Wastes Results in Low Microbially Mediated Arsenic Volatilization. Environmental Science & Technology. PMID 27715012 DOI: 10.1021/Acs.Est.6B02286  0.72
2016 Yang C, Li Y, Zhou Y, Lei X, Zheng W, Tian Y, Van Nostrand JD, He Z, Wu L, Zhou J, Zheng T. A comprehensive insight into functional profiles of free-living microbial community responses to a toxic Akashiwo sanguinea bloom. Scientific Reports. 6: 34645. PMID 27703234 DOI: 10.1038/Srep34645  0.76
2016 Utturkar SM, Bayer EA, Borovok I, Lamed R, Hurt RA, Land ML, Klingeman DM, Elias D, Zhou J, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, et al. Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7. Genome Announcements. 4. PMID 27688341 DOI: 10.1128/Genomea.01043-16  0.52
2016 Xue K, Yuan MM, Xie J, Li D, Qin Y, Hale LE, Wu L, Deng Y, He Z, Van Nostrand JD, Luo Y, Tiedje JM, Zhou J. Annual Removal of Aboveground Plant Biomass Alters Soil Microbial Responses to Warming. Mbio. 7. PMID 27677789 DOI: 10.1128/Mbio.00976-16  0.8
2016 Yu Z, He Z, Tao X, Zhou J, Yang Y, Zhao M, Zhang X, Zheng Z, Yuan T, Liu P, Chen Y, Nolan V, Li X. The shifts of sediment microbial community phylogenetic and functional structures during chromium (VI) reduction. Ecotoxicology (London, England). PMID 27637513 DOI: 10.1007/S10646-016-1719-6  0.76
2016 Michaletz ST, Weiser MD, McDowell NG, Zhou J, Kaspari M, Helliker BR, Enquist BJ. Corrigendum: The energetic and carbon economic origins of leaf thermoregulation. Nature Plants. 2: 16147. PMID 27564422 DOI: 10.1038/Nplants.2016.147  0.44
2016 Michaletz ST, Weiser MD, McDowell NG, Zhou J, Kaspari M, Helliker BR, Enquist BJ. The energetic and carbon economic origins of leaf thermoregulation. Nature Plants. 2: 16129. PMID 27548589 DOI: 10.1038/Nplants.2016.129  0.44
2016 Wang H, Yu L, Zhang Z, Liu W, Chen L, Cao G, Yue H, Zhou J, Yang Y, Tang Y, He JS. Molecular mechanisms of water table lowering and nitrogen deposition in affecting greenhouse gas emissions from a Tibetan alpine wetland. Global Change Biology. PMID 27536811 DOI: 10.1111/Gcb.13467  0.84
2016 Shen C, Shi Y, Ni Y, Deng Y, Van Nostrand JD, He Z, Zhou J, Chu H. Dramatic Increases of Soil Microbial Functional Gene Diversity at the Treeline Ecotone of Changbai Mountain. Frontiers in Microbiology. 7: 1184. PMID 27524983 DOI: 10.3389/Fmicb.2016.01184  0.76
2016 Wu L, Yang Y, Chen S, Zhao M, Zhu Z, Yang S, Qu Y, Ma Q, He Z, Zhou J, He Q. Long-term successional dynamics of microbial association networks in anaerobic digestion processes. Water Research. 104: 1-10. PMID 27497626 DOI: 10.1016/J.Watres.2016.07.072  0.76
2016 Lindsay MR, Anderson C, Fox N, Scofield G, Allen J, Anderson E, Bueter L, Poudel S, Sutherland K, Munson-McGee JH, Van Nostrand JD, Zhou J, Spear JR, Baxter BK, Lageson DR, et al. Microbialite response to an anthropogenic salinity gradient in Great Salt Lake, Utah. Geobiology. PMID 27418462 DOI: 10.1111/Gbi.12201  0.72
2016 Zhou J, Deng Y, Shen L, Wen C, Yan Q, Ning D, Qin Y, Xue K, Wu L, He Z, Voordeckers JW, Nostrand JD, Buzzard V, Michaletz ST, Enquist BJ, et al. Temperature mediates continental-scale diversity of microbes in forest soils. Nature Communications. 7: 12083. PMID 27377774 DOI: 10.1038/Ncomms12083  0.76
2016 Zhang Y, Cong J, Lu H, Deng Y, Liu X, Zhou J, Li D. Soil bacterial endemism and potential functional redundancy in natural broadleaf forest along a latitudinal gradient. Scientific Reports. 6: 28819. PMID 27357005 DOI: 10.1038/Srep28819  0.84
2016 Qiu D, Xie M, Dai J, An W, Wei H, Tian C, Kempher ML, Zhou A, He Z, Gu B, Zhou J. Differential regulation of the two ferrochelatase paralogues in Shewanella loihica PV-4 in response to environmental stresses. Applied and Environmental Microbiology. PMID 27287322 DOI: 10.1128/Aem.00203-16  0.76
2016 Shi S, Nuccio EE, Shi ZJ, He Z, Zhou J, Firestone MK. The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages. Ecology Letters. PMID 27264635 DOI: 10.1111/Ele.12630  0.76
2016 Wang X, Wen X, Deng Y, Xia Y, Yang Y, Zhou J. Is there a distance-decay relationship in biological wastewater treatment plants? Applied and Environmental Microbiology. PMID 27235444 DOI: 10.1128/Aem.01071-16  0.84
2016 Xue K, Xie J, Zhou A, Liu F, Li D, Wu L, Deng Y, He Z, Van Nostrand JD, Luo Y, Zhou J. Warming Alters Expressions of Microbial Functional Genes Important to Ecosystem Functioning. Frontiers in Microbiology. 7: 668. PMID 27199978 DOI: 10.3389/Fmicb.2016.00668  0.8
2016 Johnston ER, Rodriguez-R LM, Luo C, Yuan MM, Wu L, He Z, Schuur EA, Luo Y, Tiedje JM, Zhou J, Konstantinidis KT. Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem. Frontiers in Microbiology. 7: 579. PMID 27199914 DOI: 10.3389/Fmicb.2016.00579  0.76
2016 Liang B, Kong D, Ma J, Wen C, Yuan T, Lee DJ, Zhou J, Wang A. Low temperature acclimation with electrical stimulation enhance the biocathode functioning stability for antibiotics detoxification. Water Research. 100: 157-168. PMID 27183211 DOI: 10.1016/J.Watres.2016.05.028  0.76
2016 Trivedi P, Delgado-Baquerizo M, Trivedi C, Hu H, Anderson IC, Jeffries TC, Zhou J, Singh BK. Microbial regulation of the soil carbon cycle: evidence from gene-enzyme relationships. The Isme Journal. PMID 27168143 DOI: 10.1038/Ismej.2016.65  0.76
2016 Bouskill NJ, Wood TE, Baran R, Ye Z, Bowen BP, Lim H, Zhou J, Nostrand JD, Nico P, Northen TR, Silver WL, Brodie EL. Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism. Frontiers in Microbiology. 7: 525. PMID 27148214 DOI: 10.3389/Fmicb.2016.00525  0.76
2016 Yan Q, Li J, Yu Y, Wang J, He Z, Van Nostrand JD, Kempher ML, Wu L, Wang Y, Liao L, Li X, Wu S, Ni J, Wang C, Zhou J. Environmental filtering decreases with fish development for the assembly of gut microbiota. Environmental Microbiology. PMID 27130138 DOI: 10.1111/1462-2920.13365  0.8
2016 Jiang Z, Li P, Van Nostrand JD, Zhang P, Zhou J, Wang Y, Dai X, Zhang R, Jiang D, Wang Y. Microbial communities and arsenic biogeochemistry at the outflow of an alkaline sulfide-rich hot spring. Scientific Reports. 6: 25262. PMID 27126380 DOI: 10.1038/Srep25262  0.76
2016 Tu Q, Deng Y, Yan Q, Shen L, Lin L, He Z, Wu L, Van Nostrand J, Buzzard V, Michaletz ST, Enquist BJ, Weiser MD, Kaspari M, Waide R, Brown JH, ... Zhou J, et al. Biogeographic Patterns of Soil Diazotrophic Communities across Six Forests in the North America. Molecular Ecology. PMID 27085668 DOI: 10.1111/Mec.13651  0.76
2016 Hemme CL, Green SJ, Rishishwar L, Prakash O, Pettenato A, Chakraborty R, Deutschbauer AM, Van Nostrand JD, Wu L, He Z, Jordan IK, Hazen TC, Arkin AP, Kostka JE, Zhou J. Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community. Mbio. 7. PMID 27048805 DOI: 10.1128/Mbio.02234-15  0.76
2016 Huang C, Liu Q, Chen C, Chen F, Zhao YK, Gao LF, Liu WZ, Zhou JZ, Li ZL, Wang AJ. Elemental sulfur recovery and spatial distribution of functional bacteria and expressed genes under different carbon/nitrate/sulfide loadings in up-flow anaerobic sludge blanket reactors. Journal of Hazardous Materials. PMID 27045457 DOI: 10.1016/J.Jhazmat.2016.03.024  0.68
2016 Wei H, Dai J, Xia M, Romine MF, Shi L, Beliav A, Tiedje JM, Nealson KH, Fredrickson JK, Zhou J, Qiu D. Functional Roles of CymA and NapC in Reduction of Nitrate and Nitrite by Shewanella putrefaciens W3-18-1. Microbiology (Reading, England). PMID 27010745 DOI: 10.1099/Mic.0.000285  0.76
2016 Herath A, Wawrik B, Qin Y, Zhou JZ, Callaghan AV. Transcriptional response of Desulfatibacillum alkenivorans AK-01 to growth on alkanes: insights from RT-qPCR and microarray analyses. Fems Microbiology Ecology. PMID 27009900 DOI: 10.1093/Femsec/Fiw062  0.76
2016 Wang K, Lu W, Tu Q, Ge Y, He J, Zhou Y, Gou Y, Van Nostrand JD, Qin Y, Li J, Zhou J, Li Y, Xiao L, Zhou X. Preliminary analysis of salivary microbiome and their potential roles in oral lichen planus. Scientific Reports. 6: 22943. PMID 26961389 DOI: 10.1038/Srep22943  0.76
2016 Kuang J, Huang L, He Z, Chen L, Hua Z, Jia P, Li S, Liu J, Li J, Zhou J, Shu W. Predicting taxonomic and functional structure of microbial communities in acid mine drainage. The Isme Journal. PMID 26943622 DOI: 10.1038/Ismej.2015.201  0.76
2016 Weiss S, Van Treuren W, Lozupone C, Faust K, Friedman J, Deng Y, Xia LC, Xu ZZ, Ursell L, Alm EJ, Birmingham A, Cram JA, Fuhrman JA, Raes J, Sun F, Zhou J, et al. Correlation detection strategies in microbial data sets vary widely in sensitivity and precision. The Isme Journal. PMID 26905627 DOI: 10.1038/Ismej.2015.235  0.72
2016 Liang Y, Zhao H, Deng Y, Zhou J, Li G, Sun B. Long-Term Oil Contamination Alters the Molecular Ecological Networks of Soil Microbial Functional Genes. Frontiers in Microbiology. 7: 60. PMID 26870020 DOI: 10.3389/Fmicb.2016.00060  0.76
2016 Van Nostrand JD, Yin H, Wu L, Yuan T, Zhou J. Hybridization of Environmental Microbial Community Nucleic Acids by GeoChip. Methods in Molecular Biology (Clifton, N.J.). 1399: 183-96. PMID 26791504 DOI: 10.1007/978-1-4939-3369-3_11  0.68
2016 Zhang YZ, Li Y, Xie BB, Chen XL, Yao QQ, Zhang XY, Kempher ML, Zhou J, Oren A, Qin QL. Nascent Genomic Evolution and Allopatric Speciation of Myroides profundi D25 in Its Transition from Land to Ocean. Mbio. 7. PMID 26758181 DOI: 10.1128/Mbio.01946-15  0.68
2016 Xia Y, Hu M, Wen X, Wang X, Yang Y, Zhou J. Diversity and interactions of microbial functional genes under differing environmental conditions: insights from a membrane bioreactor and an oxidation ditch. Scientific Reports. 6: 18509. PMID 26743465 DOI: 10.1038/Srep18509  0.68
2016 Wang Y, Zhang R, Zheng Q, Deng Y, Nostrand JDV, Zhou J, Jiao N. Bacterioplankton community resilience to ocean acidification: evidence from microbial network analysis Ices Journal of Marine Science. 73: 865-875. DOI: 10.1093/Icesjms/Fsv187  0.72
2016 Hou YN, Liu H, Han JL, Cai WW, Zhou J, Wang AJ, Cheng HY. Electroactive Biofilm Serving as the Green Synthesizer and Stabilizer for in Situ Fabricating 3D Nanopalladium Network: An Efficient Electrocatalyst Acs Sustainable Chemistry and Engineering. 4: 5392-5397. DOI: 10.1021/Acssuschemeng.6B00647  0.68
2016 Feng W, Shi Z, Jiang J, Xia J, Liang J, Zhou J, Luo Y. Methodological uncertainty in estimating carbon turnover times of soil fractions Soil Biology and Biochemistry. 100: 118-124. DOI: 10.1016/J.Soilbio.2016.06.003  0.6
2016 Bracho R, Natali S, Pegoraro E, Crummer KG, Schädel C, Celis G, Hale L, Wu L, Yin H, Tiedje JM, Konstantinidis KT, Luo Y, Zhou J, Schuur EAG. Temperature sensitivity of organic matter decomposition of permafrost-region soils during laboratory incubations Soil Biology and Biochemistry. 97: 1-14. DOI: 10.1016/J.Soilbio.2016.02.008  0.76
2016 Jiang Y, Liang Y, Li C, Wang F, Sui Y, Suvannang N, Zhou J, Sun B. Crop rotations alter bacterial and fungal diversity in paddy soils across East Asia Soil Biology and Biochemistry. 95: 250-261. DOI: 10.1016/J.Soilbio.2016.01.007  0.6
2016 Morrison E, Newman S, Bae HS, He Z, Zhou J, Reddy KR, Ogram A. Microbial genetic and enzymatic responses to an anthropogenic phosphorus gradient within a subtropical peatland Geoderma. 268: 119-127. DOI: 10.1016/J.Geoderma.2016.01.008  0.76
2016 Xu X, Shi Z, Li D, Rey A, Ruan H, Craine JM, Liang J, Zhou J, Luo Y. Soil properties control decomposition of soil organic carbon: Results from data-assimilation analysis Geoderma. 262: 235-242. DOI: 10.1016/J.Geoderma.2015.08.038  0.6
2016 Wang M, Wang S, Wu L, Xu D, Lin Q, Hu Y, Li X, Zhou J, Yang Y. Evaluating the lingering effect of livestock grazing on functional potentials of microbial communities in Tibetan grassland soils Plant and Soil. 1-15. DOI: 10.1007/S11104-016-2897-Y  0.76
2015 Hemme CL, Tu Q, Shi Z, Qin Y, Gao W, Deng Y, Nostrand JD, Wu L, He Z, Chain PS, Tringe SG, Fields MW, Rubin EM, Tiedje JM, Hazen TC, ... ... Zhou J, et al. Comparative metagenomics reveals impact of contaminants on groundwater microbiomes. Frontiers in Microbiology. 6: 1205. PMID 26583008 DOI: 10.3389/Fmicb.2015.01205  0.76
2015 Zhang Y, Ling J, Yang Q, Wen C, Yan Q, Sun H, Van Nostrand JD, Shi Z, Zhou J, Dong J. The functional gene composition and metabolic potential of coral-associated microbial communities. Scientific Reports. 5: 16191. PMID 26536917 DOI: 10.1038/Srep16191  0.76
2015 Cai M, Nie Y, Chi CQ, Tang YQ, Li Y, Wang XB, Liu ZS, Yang Y, Zhou J, Wu XL. Crude oil as a microbial seed bank with unexpected functional potentials. Scientific Reports. 5: 16057. PMID 26525361 DOI: 10.1038/Srep16057  0.76
2015 Wang X, Van Nostrand JD, Deng Y, Lü X, Wang C, Zhou J, Han X. Scale-dependent effects of climate and geographic distance on bacterial diversity patterns across northern China's grasslands. Fems Microbiology Ecology. PMID 26519142 DOI: 10.1093/Femsec/Fiv133  0.84
2015 Huang C, Li ZL, Chen F, Liu Q, Zhao YK, Gao LF, Chen C, Zhou JZ, Wang AJ. Efficient regulation of elemental sulfur recovery through optimizing working height of upflow anaerobic sludge blanket reactor during denitrifying sulfide removal process. Bioresource Technology. PMID 26497112 DOI: 10.1016/J.Biortech.2015.09.109  0.6
2015 Liang Y, Zhang X, Zhou J, Li G. Long-term oil contamination increases deterministic assembly processes in soil microbes. Ecological Applications : a Publication of the Ecological Society of America. 25: 1235-43. PMID 26485952 DOI: 10.1890/14-1672.1  0.8
2015 Michaletz ST, Weiser MD, Zhou J, Kaspari M, Helliker BR, Enquist BJ. Plant Thermoregulation: Energetics, Trait-Environment Interactions, and Carbon Economics. Trends in Ecology & Evolution. PMID 26476814 DOI: 10.1016/J.Tree.2015.09.006  0.44
2015 Myung J, Galega WM, Van Nostrand JD, Yuan T, Zhou J, Criddle CS. Long-term cultivation of a stable Methylocystis-dominated methanotrophic enrichment enabling tailored production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate). Bioresource Technology. 198: 811-818. PMID 26454368 DOI: 10.1016/J.Biortech.2015.09.094  0.76
2015 Deng Y, He Z, Xiong J, Yu H, Xu M, Hobbie SE, Reich PB, Schadt CW, Kent A, Pendall E, Wallenstein M, Zhou J. Elevated carbon dioxide accelerates the spatial turnover of soil microbial communities. Global Change Biology. PMID 26414247 DOI: 10.1111/Gcb.13098  0.76
2015 Wang F, Liang Y, Jiang Y, Yang Y, Xue K, Xiong J, Zhou J, Sun B. Planting increases the abundance and structure complexity of soil core functional genes relevant to carbon and nitrogen cycling. Scientific Reports. 5: 14345. PMID 26396042 DOI: 10.1038/Srep14345  0.84
2015 Yin H, Niu J, Ren Y, Cong J, Zhang X, Fan F, Xiao Y, Zhang X, Deng J, Xie M, He Z, Zhou J, Liang Y, Liu X. An integrated insight into the response of sedimentary microbial communities to heavy metal contamination. Scientific Reports. 5: 14266. PMID 26391875 DOI: 10.1038/Srep14266  0.76
2015 Xu M, He Z, Zhang Q, Liu J, Guo J, Sun G, Zhou J. Responses of aromatic-degrading microbial communities to elevated nitrate in sediments. Environmental Science & Technology. PMID 26390227 DOI: 10.1021/Acs.Est.5B03442  0.8
2015 Qu Y, Zhang X, Ma Q, Deng J, Deng Y, Van Nostrand JD, Wu L, He Z, Qin Y, Zhou J, Zhou J. Microbial Community Dynamics and Activity Link to Indigo Production from Indole in Bioaugmented Activated Sludge Systems. Plos One. 10: e0138455. PMID 26372223 DOI: 10.1371/Journal.Pone.0138455  0.64
2015 Ding J, Zhang Y, Wang M, Sun X, Cong J, Deng Y, Lu H, Yuan T, Van Nostrand JD, Li D, Zhou J, Yang Y. Soil organic matter quantity and quality shape microbial community compositions of subtropical broadleaved forests. Molecular Ecology. PMID 26363284 DOI: 10.1111/Mec.13384  0.76
2015 Huang C, Li ZL, Chen F, Liu Q, Zhao YK, Zhou JZ, Wang AJ. Microbial community structure and function in response to the shift of sulfide/nitrate loading ratio during the denitrifying sulfide removal process. Bioresource Technology. 197: 227-234. PMID 26340031 DOI: 10.1016/J.Biortech.2015.08.019  0.68
2015 Myung J, Wang Z, Yuan T, Zhang P, Van Nostrand JD, Zhou J, Criddle CS. Production of Nitrous Oxide from Nitrite in Stable Type II Methanotrophic Enrichments. Environmental Science & Technology. 49: 10969-75. PMID 26301949 DOI: 10.1021/Acs.Est.5B03385  0.68
2015 Penton CR, St Louis D, Pham A, Cole JR, Wu L, Luo Y, Schuur EA, Zhou J, Tiedje JM. Denitrifying and diazotrophic community responses to artificial warming in permafrost and tallgrass prairie soils. Frontiers in Microbiology. 6: 746. PMID 26284038 DOI: 10.3389/Fmicb.2015.00746  0.8
2015 Tu Q, Zhou X, He Z, Xue K, Wu L, Reich P, Hobbie S, Zhou J. The Diversity and Co-occurrence Patterns of N2-Fixing Communities in a CO 2-Enriched Grassland Ecosystem. Microbial Ecology. PMID 26280746 DOI: 10.1007/S00248-015-0659-7  0.76
2015 Li X, Bond PL, Van Nostrand JD, Zhou J, Huang L. From lithotroph- to organotroph-dominant: directional shift of microbial community in sulphidic tailings during phytostabilization. Scientific Reports. 5: 12978. PMID 26268667 DOI: 10.1038/Srep12978  0.72
2015 Shi S, Nuccio E, Herman DJ, Rijkers R, Estera K, Li J, da Rocha UN, He Z, Pett-Ridge J, Brodie EL, Zhou J, Firestone M. Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons. Mbio. 6. PMID 26242625 DOI: 10.1128/Mbio.00746-15  0.68
2015 Sheng Z, Van Nostrand JD, Zhou J, Liu Y. The effects of silver nanoparticles on intact wastewater biofilms. Frontiers in Microbiology. 6: 680. PMID 26217316 DOI: 10.3389/Fmicb.2015.00680  0.72
2015 Deng Y, Zhang P, Qin Y, Tu Q, Yang Y, He Z, Schadt CW, Zhou J. Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation. Environmental Microbiology. PMID 26177312 DOI: 10.1111/1462-2920.12981  0.76
2015 Zhang Y, Tian Z, Liu M, Shi ZJ, Hale L, Zhou J, Yang M. High concentrations of the antibiotic spiramycin in wastewater lead to high abundance of ammonia-oxidizing archaea in nitrifying populations. Environmental Science & Technology. PMID 26125322 DOI: 10.1021/Acs.Est.5B01293  0.76
2015 Wu L, Wen C, Qin Y, Yin H, Tu Q, Van Nostrand JD, Yuan T, Yuan M, Deng Y, Zhou J. Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis. Bmc Microbiology. 15: 125. PMID 26084274 DOI: 10.1186/S12866-015-0450-4  0.76
2015 Huang C, Zhao Y, Li Z, Yuan Y, Chen C, Tan W, Gao S, Gao L, Zhou J, Wang A. Enhanced elementary sulfur recovery with sequential sulfate-reducing, denitrifying sulfide-oxidizing processes in a cylindrical-type anaerobic baffled reactor. Bioresource Technology. 192: 478-85. PMID 26080105 DOI: 10.1016/J.Biortech.2015.04.103  0.68
2015 Zhang Y, Cong J, Lu H, Li G, Xue Y, Deng Y, Li H, Zhou J, Li D. Soil bacterial diversity patterns and drivers along an elevational gradient on Shennongjia Mountain, China. Microbial Biotechnology. 8: 739-46. PMID 26032124 DOI: 10.1111/1751-7915.12288  0.68
2015 Liang Y, Jiang Y, Wang F, Wen C, Deng Y, Xue K, Qin Y, Yang Y, Wu L, Zhou J, Sun B. Long-term soil transplant simulating climate change with latitude significantly alters microbial temporal turnover. The Isme Journal. 9: 2561-72. PMID 25989371 DOI: 10.1038/Ismej.2015.78  0.84
2015 Smith MB, Rocha AM, Smillie CS, Olesen SW, Paradis C, Wu L, Campbell JH, Fortney JL, Mehlhorn TL, Lowe KA, Earles JE, Phillips J, Techtmann SM, Joyner DC, Elias DA, ... ... Zhou J, et al. Natural bacterial communities serve as quantitative geochemical biosensors. Mbio. 6: e00326-15. PMID 25968645 DOI: 10.1128/Mbio.00326-15  0.76
2015 Cong J, Yang Y, Liu X, Lu H, Liu X, Zhou J, Li D, Yin H, Ding J, Zhang Y. Analyses of soil microbial community compositions and functional genes reveal potential consequences of natural forest succession. Scientific Reports. 5: 10007. PMID 25943705 DOI: 10.1038/Srep10007  0.76
2015 Wood SA, Almaraz M, Bradford MA, McGuire KL, Naeem S, Neill C, Palm CA, Tully KL, Zhou J. Farm management, not soil microbial diversity, controls nutrient loss from smallholder tropical agriculture. Frontiers in Microbiology. 6: 90. PMID 25926815 DOI: 10.3389/Fmicb.2015.00090  0.76
2015 Xu T, Li Y, Shi Z, Hemme CL, Li Y, Zhu Y, Van Nostrand JD, He Z, Zhou J. Efficient Genome Editing in Clostridium cellulolyticum via CRISPR-Cas9 Nickase. Applied and Environmental Microbiology. 81: 4423-31. PMID 25911483 DOI: 10.1128/Aem.00873-15  0.8
2015 Dai J, Wei H, Tian C, Damron FH, Zhou J, Qiu D. An extracytoplasmic function sigma factor-dependent periplasmic glutathione peroxidase is involved in oxidative stress response of Shewanella oneidensis. Bmc Microbiology. 15: 34. PMID 25887418 DOI: 10.1186/S12866-015-0357-0  0.76
2015 Zhang P, Wu WM, Van Nostrand JD, Deng Y, He Z, Gihring T, Zhang G, Schadt CW, Watson D, Jardine P, Criddle CS, Brooks S, Marsh TL, Tiedje JM, Arkin AP, ... Zhou J, et al. Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction. Applied and Environmental Microbiology. 81: 4164-72. PMID 25862231 DOI: 10.1128/Aem.00043-15  0.76
2015 Liang Y, Wu L, Clark IM, Xue K, Yang Y, Van Nostrand JD, Deng Y, He Z, McGrath S, Storkey J, Hirsch PR, Sun B, Zhou J. Over 150 years of long-term fertilization alters spatial scaling of microbial biodiversity. Mbio. 6. PMID 25852161 DOI: 10.1128/Mbio.00240-15  0.76
2015 Dopheide A, Lear G, He Z, Zhou J, Lewis GD. Functional gene composition, diversity and redundancy in microbial stream biofilm communities. Plos One. 10: e0123179. PMID 25849814 DOI: 10.1371/Journal.Pone.0123179  0.76
2015 Zhou A, Hillesland KL, He Z, Schackwitz W, Tu Q, Zane GM, Ma Q, Qu Y, Stahl DA, Wall JD, Hazen TC, Fields MW, Arkin AP, Zhou J. Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris. The Isme Journal. PMID 25848870 DOI: 10.1038/Ismej.2015.45  0.76
2015 Zhang P, Van Nostrand JD, He Z, Chakraborty R, Deng Y, Curtis D, Fields M, Hazen TC, Arkin AP, Zhou J. A slow-release substrate stimulates groundwater microbial communities for long-term in-situ Cr(VI) reduction. Environmental Science & Technology. PMID 25835088 DOI: 10.1021/Acs.Est.5B00024  0.76
2015 Xiong J, He Z, Shi S, Kent A, Deng Y, Wu L, Van Nostrand JD, Zhou J. Elevated CO2 shifts the functional structure and metabolic potentials of soil microbial communities in a C4 agroecosystem. Scientific Reports. 5: 9316. PMID 25791904 DOI: 10.1038/Srep09316  0.76
2015 Azarbad H, Nikli?ska M, Laskowski R, van Straalen NM, van Gestel CA, Zhou J, He Z, Wen C, Röling WF. Microbial community composition and functions are resilient to metal pollution along two forest soil gradients. Fems Microbiology Ecology. 91: 1-11. PMID 25764529 DOI: 10.1093/Femsec/Fiu003  0.76
2015 Qu Y, Ma Q, Deng J, Shen W, Zhang X, He Z, Van Nostrand JD, Zhou J, Zhou J. Responses of microbial communities to single-walled carbon nanotubes in phenol wastewater treatment systems. Environmental Science & Technology. 49: 4627-35. PMID 25751159 DOI: 10.1021/Es5053045  0.52
2015 Yan Q, Bi Y, Deng Y, He Z, Wu L, Van Nostrand JD, Shi Z, Li J, Wang X, Hu Z, Yu Y, Zhou J. Impacts of the Three Gorges Dam on microbial structure and potential function. Scientific Reports. 5: 8605. PMID 25721383 DOI: 10.1038/Srep08605  0.84
2015 Yue H, Wang M, Wang S, Gilbert JA, Sun X, Wu L, Lin Q, Hu Y, Li X, He Z, Zhou J, Yang Y. The microbe-mediated mechanisms affecting topsoil carbon stock in Tibetan grasslands. The Isme Journal. PMID 25689025 DOI: 10.1038/Ismej.2015.19  0.84
2015 Yang C, Li Y, Zhou B, Zhou Y, Zheng W, Tian Y, Van Nostrand JD, Wu L, He Z, Zhou J, Zheng T. Illumina sequencing-based analysis of free-living bacterial community dynamics during an Akashiwo sanguine bloom in Xiamen sea, China. Scientific Reports. 5: 8476. PMID 25684124 DOI: 10.1038/Srep08476  0.8
2015 Lin J, Chen J, He J, Chen J, Yan Q, Zhou J, Xie P. Effects of microcystin-LR on bacterial and fungal functional genes profile in rat gut. Toxicon : Official Journal of the International Society On Toxinology. 96: 50-6. PMID 25617596 DOI: 10.1016/J.Toxicon.2015.01.011  0.76
2015 Tu Q, Yuan M, He Z, Deng Y, Xue K, Wu L, Hobbie SE, Reich PB, Zhou J. Fungal communities respond to long-term CO2 elevation by community reassembly. Applied and Environmental Microbiology. 81: 2445-54. PMID 25616796 DOI: 10.1128/Aem.04040-14  0.76
2015 Ding J, Zhang Y, Deng Y, Cong J, Lu H, Sun X, Yang C, Yuan T, Van Nostrand JD, Li D, Zhou J, Yang Y. Integrated metagenomics and network analysis of soil microbial community of the forest timberline. Scientific Reports. 5: 7994. PMID 25613225 DOI: 10.1038/Srep07994  0.76
2015 Ma J, Deng Y, Yuan T, Zhou J, Alvarez PJ. Succession of microbial functional communities in response to a pilot-scale ethanol-blended fuel release throughout the plume life cycle. Environmental Pollution (Barking, Essex : 1987). 198: 154-60. PMID 25603154 DOI: 10.1016/J.Envpol.2015.01.005  0.72
2015 Saxena G, Marzinelli EM, Naing NN, He Z, Liang Y, Tom L, Mitra S, Ping H, Joshi UM, Reuben S, Mynampati KC, Mishra S, Umashankar S, Zhou J, Andersen GL, et al. Ecogenomics reveals metals and land-use pressures on microbial communities in the waterways of a megacity. Environmental Science & Technology. 49: 1462-71. PMID 25564876 DOI: 10.1021/Es504531S  0.76
2015 Deng J, Gu Y, Zhang J, Xue K, Qin Y, Yuan M, Yin H, He Z, Wu L, Schuur EA, Tiedje JM, Zhou J. Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska. Molecular Ecology. 24: 222-34. PMID 25424441 DOI: 10.1111/Mec.13015  0.76
2015 Su JQ, Ding LJ, Xue K, Yao HY, Quensen J, Bai SJ, Wei WX, Wu JS, Zhou J, Tiedje JM, Zhu YG. Long-term balanced fertilization increases the soil microbial functional diversity in a phosphorus-limited paddy soil. Molecular Ecology. 24: 136-50. PMID 25410123 DOI: 10.1111/Mec.13010  0.6
2015 Macdonald CA, Crawley MJ, Wright DJ, Kuczynski J, Robinson L, Knight R, Al-Soud WA, Sørensen SJ, Deng Y, Zhou J, Singh BK. Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment. Environmental Microbiology. 17: 841-54. PMID 24935069 DOI: 10.1111/1462-2920.12539  0.72
2015 Liu S, Wang F, Xue K, Sun B, Zhang Y, He Z, Van Nostrand JD, Zhou J, Yang Y. The interactive effects of soil transplant into colder regions and cropping on soil microbiology and biogeochemistry. Environmental Microbiology. 17: 566-76. PMID 24548455 DOI: 10.1111/1462-2920.12398  0.84
2015 Xu Y, Zhou J, Sun W, Li D, Dang L. Preparation process analysis and performance research on hydroxyapatite/ sodium alginate composite bone scaffold Materials Research Innovations. 19: 365-369. DOI: 10.1179/1432891715Z.0000000001701  0.48
2015 Zhou J, Yao J, Hu HH, Song Y. Accelerated aging life evaluation method of silicone rubber based on segmented nonlinear Arrhenius model Materials Research Innovations. 19. DOI: 10.1179/1432891714Z.0000000001207  0.68
2015 Trivedi P, Rochester IJ, Trivedi C, Van Nostrand JD, Zhou J, Karunaratne S, Anderson IC, Singh BK. Soil aggregate size mediates the impacts of cropping regimes on soil carbon and microbial communities Soil Biology and Biochemistry. 91: 169-181. DOI: 10.1016/J.Soilbio.2015.08.034  0.76
2015 Shi Y, Grogan P, Sun H, Xiong J, Yang Y, Zhou J, Chu H. Multi-scale variability analysis reveals the importance of spatial distance in shaping Arctic soil microbial functional communities Soil Biology and Biochemistry. 86: 126-134. DOI: 10.1016/J.Soilbio.2015.03.028  0.84
2015 Liang J, Li D, Shi Z, Tiedje JM, Zhou J, Schuur EAG, Konstantinidis KT, Luo Y. Methods for estimating temperature sensitivity of soil organic matter based on incubation data: A comparative evaluation Soil Biology and Biochemistry. 80: 127-135. DOI: 10.1016/J.Soilbio.2014.10.005  0.6
2015 Zhang Z, Wang H, Zhou J, Li H, He Z, Nostrand JDV, Wang Z, Xu X. Redox potential and microbial functional gene diversity in wetland sediments under simulated warming conditions: implications for phosphorus mobilization Hydrobiologia. 743: 221-235. DOI: 10.1007/S10750-014-2039-6  0.8
2015 Wei STS, Fernandez-Martinez MA, Chan Y, Van Nostrand JD, de los Rios-Murillo A, Chiu JMY, Ganeshram AM, Cary SC, Zhou J, Pointing SB. Diverse metabolic and stress-tolerance pathways in chasmoendolithic and soil communities of Miers Valley, McMurdo Dry Valleys, Antarctica Polar Biology. 38: 433-443. DOI: 10.1007/S00300-014-1598-3  0.6
2014 Zhao M, Wang F, Liu S, Xue K, Liang Y, Bai S, He Z, Van Nostrand JD, Zhou J, Yang Y, Sun B. GeoChip profiling of microbial community in response to global changes simulated by soil transplant and cropping. Genomics Data. 2: 166-9. PMID 26484087 DOI: 10.1016/J.Gdata.2014.06.002  0.84
2014 Gao Y, Wang S, Xu D, Yu H, Wu L, Lin Q, Hu Y, Li X, He Z, Deng Y, Zhou J, Yang Y. GeoChip as a metagenomics tool to analyze the microbial gene diversity along an elevation gradient. Genomics Data. 2: 132-4. PMID 26484083 DOI: 10.1016/J.Gdata.2014.06.003  0.84
2014 Jia X, Zhou X, Luo Y, Xue K, Xue X, Xu X, Yang Y, Wu L, Zhou J. Effects of substrate addition on soil respiratory carbon release under long-term warming and clipping in a tallgrass prairie. Plos One. 9: e114203. PMID 25490701 DOI: 10.1371/Journal.Pone.0114203  0.84
2014 Zhao J, Zuo J, Wang X, Lin J, Yang Y, Zhou J, Chu H, Li P. GeoChip-based analysis of microbial community of a combined nitritation-anammox reactor treating anaerobic digestion supernatant. Water Research. 67: 345-54. PMID 25459223 DOI: 10.1016/J.Watres.2014.09.029  0.84
2014 Li X, Rui J, Xiong J, Li J, He Z, Zhou J, Yannarell AC, Mackie RI. Functional potential of soil microbial communities in the maize rhizosphere. Plos One. 9: e112609. PMID 25383887 DOI: 10.1371/Journal.Pone.0112609  0.76
2014 Hillesland KL, Lim S, Flowers JJ, Turkarslan S, Pinel N, Zane GM, Elliott N, Qin Y, Wu L, Baliga NS, Zhou J, Wall JD, Stahl DA. Erosion of functional independence early in the evolution of a microbial mutualism. Proceedings of the National Academy of Sciences of the United States of America. 111: 14822-7. PMID 25267659 DOI: 10.1073/Pnas.1407986111  0.76
2014 Wang C, Wang X, Liu D, Wu H, Lü X, Fang Y, Cheng W, Luo W, Jiang P, Shi J, Yin H, Zhou J, Han X, Bai E. Aridity threshold in controlling ecosystem nitrogen cycling in arid and semi-arid grasslands. Nature Communications. 5: 4799. PMID 25185641 DOI: 10.1038/Ncomms5799  0.84
2014 Chen Y, Qin N, Guo J, Qian G, Fang D, Shi D, Xu M, Yang F, He Z, Van Nostrand JD, Yuan T, Deng Y, Zhou J, Li L. Functional gene arrays-based analysis of fecal microbiomes in patients with liver cirrhosis. Bmc Genomics. 15: 753. PMID 25179593 DOI: 10.1186/1471-2164-15-753  0.8
2014 Zhang Y, Cong J, Lu H, Li G, Qu Y, Su X, Zhou J, Li D. Community structure and elevational diversity patterns of soil Acidobacteria. Journal of Environmental Sciences (China). 26: 1717-24. PMID 25108728 DOI: 10.1016/J.Jes.2014.06.012  0.68
2014 Vigneron A, Cruaud P, Roussel EG, Pignet P, Caprais JC, Callac N, Ciobanu MC, Godfroy A, Cragg BA, Parkes JR, Van Nostrand JD, He Z, Zhou J, Toffin L. Phylogenetic and functional diversity of microbial communities associated with subsurface sediments of the Sonora Margin, Guaymas Basin. Plos One. 9: e104427. PMID 25099369 DOI: 10.1371/Journal.Pone.0104427  0.68
2014 Yu H, Chen C, Ma J, Liu W, Zhou J, Lee DJ, Ren N, Wang A. GeoChip-based analysis of the microbial community functional structures in simultaneous desulfurization and denitrification process. Journal of Environmental Sciences (China). 26: 1375-82. PMID 25079984 DOI: 10.1016/J.Jes.2014.05.001  0.6
2014 Xu XJ, Chen C, Wang AJ, Yu H, Zhou X, Guo HL, Yuan Y, Lee DJ, Zhou J, Ren NQ. Bioreactor performance and functional gene analysis of microbial community in a limited-oxygen fed bioreactor for co-reduction of sulfate and nitrate with high organic input. Journal of Hazardous Materials. 278: 250-7. PMID 24981676 DOI: 10.1016/J.Jhazmat.2014.06.006  0.68
2014 Guo X, Yin H, Liang Y, Hu Q, Zhou X, Xiao Y, Ma L, Zhang X, Qiu G, Liu X. Comparative genome analysis reveals metabolic versatility and environmental adaptations of Sulfobacillus thermosulfidooxidans strain ST. Plos One. 9: e99417. PMID 24940621 DOI: 10.1371/journal.pone.0099417  0.48
2014 Kappell AD, Wei Y, Newton RJ, Van Nostrand JD, Zhou J, McLellan SL, Hristova KR. The polycyclic aromatic hydrocarbon degradation potential of Gulf of Mexico native coastal microbial communities after the Deepwater Horizon oil spill. Frontiers in Microbiology. 5: 205. PMID 24847320 DOI: 10.3389/Fmicb.2014.00205  0.72
2014 Xia Y, Wang X, Wen X, Ding K, Zhou J, Yang Y, Zhang Y. Overall functional gene diversity of microbial communities in three full-scale activated sludge bioreactors. Applied Microbiology and Biotechnology. 98: 7233-42. PMID 24816624 DOI: 10.1007/S00253-014-5791-7  0.68
2014 Paula FS, Rodrigues JL, Zhou J, Wu L, Mueller RC, Mirza BS, Bohannan BJ, Nüsslein K, Deng Y, Tiedje JM, Pellizari VH. Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities. Molecular Ecology. 23: 2988-99. PMID 24806276 DOI: 10.1111/Mec.12786  0.6
2014 Liang Y, Zhao H, Zhang X, Zhou J, Li G. Contrasting microbial functional genes in two distinct saline-alkali and slightly acidic oil-contaminated sites. The Science of the Total Environment. 487: 272-8. PMID 24784752 DOI: 10.1016/J.Scitotenv.2014.04.032  0.8
2014 Zhang Y, Cong J, Lu H, Yang C, Yang Y, Zhou J, Li D. An integrated study to analyze soil microbial community structure and metabolic potential in two forest types. Plos One. 9: e93773. PMID 24743581 DOI: 10.1371/Journal.Pone.0093773  0.76
2014 Qin QL, Xie BB, Zhang XY, Chen XL, Zhou BC, Zhou J, Oren A, Zhang YZ. A proposed genus boundary for the prokaryotes based on genomic insights. Journal of Bacteriology. 196: 2210-5. PMID 24706738 DOI: 10.1128/Jb.01688-14  0.68
2014 Zhao M, Xue K, Wang F, Liu S, Bai S, Sun B, Zhou J, Yang Y. Microbial mediation of biogeochemical cycles revealed by simulation of global changes with soil transplant and cropping. The Isme Journal. 8: 2045-55. PMID 24694714 DOI: 10.1038/Ismej.2014.46  0.84
2014 Wakelin S, Gerard E, Black A, Hamonts K, Condron L, Yuan T, van Nostrand J, Zhou J, O'Callaghan M. Mechanisms of pollution induced community tolerance in a soil microbial community exposed to Cu. Environmental Pollution (Barking, Essex : 1987). 190: 1-9. PMID 24686114 DOI: 10.1016/J.Envpol.2014.03.008  0.72
2014 Sun Y, Shen YX, Liang P, Zhou J, Yang Y, Huang X. Linkages between microbial functional potential and wastewater constituents in large-scale membrane bioreactors for municipal wastewater treatment. Water Research. 56: 162-71. PMID 24675272 DOI: 10.1016/J.Watres.2014.03.003  0.76
2014 Wang X, Xia Y, Wen X, Yang Y, Zhou J. Microbial community functional structures in wastewater treatment plants as characterized by GeoChip. Plos One. 9: e93422. PMID 24671164 DOI: 10.1371/Journal.Pone.0093422  0.76
2014 Xu M, Zhang Q, Xia C, Zhong Y, Sun G, Guo J, Yuan T, Zhou J, He Z. Elevated nitrate enriches microbial functional genes for potential bioremediation of complexly contaminated sediments. The Isme Journal. 8: 1932-44. PMID 24671084 DOI: 10.1038/Ismej.2014.42  0.8
2014 Li Y, He J, He Z, Zhou Y, Yuan M, Xu X, Sun F, Liu C, Li J, Xie W, Deng Y, Qin Y, VanNostrand JD, Xiao L, Wu L, ... Zhou J, et al. Phylogenetic and functional gene structure shifts of the oral microbiomes in periodontitis patients. The Isme Journal. 8: 1879-91. PMID 24671083 DOI: 10.1038/Ismej.2014.28  0.76
2014 Diaz MR, Van Norstrand JD, Eberli GP, Piggot AM, Zhou J, Klaus JS. Functional gene diversity of oolitic sands from Great Bahama Bank. Geobiology. 12: 231-49. PMID 24612324 DOI: 10.1111/Gbi.12079  0.76
2014 Tu Q, He Z, Li Y, Chen Y, Deng Y, Lin L, Hemme CL, Yuan T, Van Nostrand JD, Wu L, Zhou X, Shi W, Li L, Xu J, Zhou J. Development of HuMiChip for functional profiling of human microbiomes. Plos One. 9: e90546. PMID 24595026 DOI: 10.1371/Journal.Pone.0090546  0.76
2014 Liang B, Cheng H, Van Nostrand JD, Ma J, Yu H, Kong D, Liu W, Ren N, Wu L, Wang A, Lee DJ, Zhou J. Microbial community structure and function of nitrobenzene reduction biocathode in response to carbon source switchover. Water Research. 54: 137-48. PMID 24565804 DOI: 10.1016/J.Watres.2014.01.052  0.8
2014 Li Y, Xu T, Tschaplinski TJ, Engle NL, Yang Y, Graham DE, He Z, Zhou J. Improvement of cellulose catabolism in Clostridium cellulolyticum by sporulation abolishment and carbon alleviation. Biotechnology For Biofuels. 7: 25. PMID 24555718 DOI: 10.1186/1754-6834-7-25  0.84
2014 Zhou J, Deng Y, Zhang P, Xue K, Liang Y, Van Nostrand JD, Yang Y, He Z, Wu L, Stahl DA, Hazen TC, Tiedje JM, Arkin AP. Stochasticity, succession, and environmental perturbations in a fluidic ecosystem. Proceedings of the National Academy of Sciences of the United States of America. 111: E836-45. PMID 24550501 DOI: 10.1073/Pnas.1324044111  0.76
2014 Yang F, Ning K, Chang X, Yuan X, Tu Q, Yuan T, Deng Y, Hemme CL, Van Nostrand J, Cui X, He Z, Chen Z, Guo D, Yu J, Zhang Y, ... Zhou J, et al. Saliva microbiota carry caries-specific functional gene signatures. Plos One. 9: e76458. PMID 24533043 DOI: 10.1371/Journal.Pone.0076458  0.76
2014 Tu Q, He Z, Zhou J. Strain/species identification in metagenomes using genome-specific markers. Nucleic Acids Research. 42: e67. PMID 24523352 DOI: 10.1093/Nar/Gku138  0.8
2014 Tu Q, Yu H, He Z, Deng Y, Wu L, Van Nostrand JD, Zhou A, Voordeckers J, Lee YJ, Qin Y, Hemme CL, Shi Z, Xue K, Yuan T, Wang A, ... Zhou J, et al. GeoChip 4: a functional gene-array-based high-throughput environmental technology for microbial community analysis. Molecular Ecology Resources. 14: 914-28. PMID 24520909 DOI: 10.1111/1755-0998.12239  0.8
2014 Singh BK, Quince C, Macdonald CA, Khachane A, Thomas N, Al-Soud WA, Sørensen SJ, He Z, White D, Sinclair A, Crooks B, Zhou J, Campbell CD. Loss of microbial diversity in soils is coincident with reductions in some specialized functions. Environmental Microbiology. 16: 2408-20. PMID 24422656 DOI: 10.1111/1462-2920.12353  0.76
2014 Xu T, Li Y, Van Nostrand JD, He Z, Zhou J. Cas9-based tools for targeted genome editing and transcriptional control. Applied and Environmental Microbiology. 80: 1544-52. PMID 24389925 DOI: 10.1128/Aem.03786-13  0.8
2014 Luo C, Rodriguez-R LM, Johnston ER, Wu L, Cheng L, Xue K, Tu Q, Deng Y, He Z, Shi JZ, Yuan MM, Sherry RA, Li D, Luo Y, Schuur EA, ... ... Zhou J, et al. Soil microbial community responses to a decade of warming as revealed by comparative metagenomics. Applied and Environmental Microbiology. 80: 1777-86. PMID 24375144 DOI: 10.1128/Aem.03712-13  0.76
2014 Yuan Y, Chen C, Liang B, Huang C, Zhao Y, Xu X, Tan W, Zhou X, Gao S, Sun D, Lee D, Zhou J, Wang A. Fine-tuning key parameters of an integrated reactor system for the simultaneous removal of COD, sulfate and ammonium and elemental sulfur reclamation. Journal of Hazardous Materials. 269: 56-67. PMID 24373982 DOI: 10.1016/J.Jhazmat.2013.12.014  0.72
2014 Xu T, Li Y, He Z, Zhou J. Dockerin-containing protease inhibitor protects key cellulosomal cellulases from proteolysis in Clostridium cellulolyticum. Molecular Microbiology. 91: 694-705. PMID 24330350 DOI: 10.1111/Mmi.12488  0.8
2014 Antony-Babu S, Deveau A, Van Nostrand JD, Zhou J, Le Tacon F, Robin C, Frey-Klett P, Uroz S. Black truffle-associated bacterial communities during the development and maturation of Tuber melanosporum ascocarps and putative functional roles. Environmental Microbiology. 16: 2831-47. PMID 24118660 DOI: 10.1111/1462-2920.12294  0.76
2014 He Z, Xiong J, Kent AD, Deng Y, Xue K, Wang G, Wu L, Van Nostrand JD, Zhou J. Distinct responses of soil microbial communities to elevated CO2 and O3 in a soybean agro-ecosystem. The Isme Journal. 8: 714-26. PMID 24108327 DOI: 10.1038/Ismej.2013.177  0.8
2014 Yang Y, Gao Y, Wang S, Xu D, Yu H, Wu L, Lin Q, Hu Y, Li X, He Z, Deng Y, Zhou J. The microbial gene diversity along an elevation gradient of the Tibetan grassland. The Isme Journal. 8: 430-40. PMID 23985745 DOI: 10.1038/Ismej.2013.146  0.84
2014 Zimmerman N, Izard J, Klatt C, Zhou J, Aronson E. The unseen world: Environmental microbial sequencing and identification methods for ecologists Frontiers in Ecology and the Environment. 12: 224-231. DOI: 10.1890/130055  0.68
2014 Levy O, Ball BA, Bond-Lamberty B, Cheruvelil KS, Finley AO, Lottig NR, Punyasena SW, Xiao J, Zhou J, Buckley LB, Filstrup CT, Keitt TH, Kellner JR, Knapp AK, Richardson AD, et al. Approaches to advance scientific understanding of macrosystems ecology Frontiers in Ecology and the Environment. 12: 15-23. DOI: 10.1890/130019  0.76
2014 Wang F, Zhou J, Sun B. Structure of functional ecological networks of soil microbial communities for nitrogen transformations and their response to cropping in major soils in eastern China Chinese Science Bulletin. 59: 387-396. DOI: 10.1360/972013-751  0.72
2014 Varrone C, Nostrand JDV, Liu W, Zhou B, Wang Z, Liu F, He Z, Wu L, Zhou J, Wang A. Metagenomic-based analysis of biofilm communities for electrohydrogenesis: From wastewater to hydrogen International Journal of Hydrogen Energy. 39: 4222-4233. DOI: 10.1016/J.Ijhydene.2014.01.001  0.8
2014 Nostrand JDV, Zhou J. Chapter 1 - Applications of Functional Gene Microarrays for Profiling Microbial Communities Comprehensive Analytical Chemistry. 64. DOI: 10.1016/B978-0-444-62650-9.00001-4  0.64
2014 Leigh MB, Wu WM, Cardenas E, Uhlik O, Carroll S, Gentry T, Marsh TL, Zhou J, Jardine P, Criddle CS, Tiedje JM. Microbial communities biostimulated by ethanol during uranium (VI) bioremediation in contaminated sediment as shown by stable isotope probing Frontiers of Environmental Science & Engineering. DOI: 10.1007/S11783-014-0721-6  0.68
2013 Somenahally AC, Mosher JJ, Yuan T, Podar M, Phelps TJ, Brown SD, Yang ZK, Hazen TC, Arkin AP, Palumbo AV, Van Nostrand JD, Zhou J, Elias DA. Hexavalent chromium reduction under fermentative conditions with lactate stimulated native microbial communities. Plos One. 8: e83909. PMID 24376771 DOI: 10.1371/Journal.Pone.0083909  0.76
2013 Xu M, Fang Y, Liu J, Chen X, Sun G, Guo J, Hua Z, Tu Q, Wu L, Zhou J, Liu X. Draft Genome Sequence of Shewanella decolorationis S12, a Dye-Degrading Bacterium Isolated from a Wastewater Treatment Plant. Genome Announcements. 1. PMID 24309738 DOI: 10.1128/Genomea.00993-13  0.8
2013 Yang Y, Chen J, Qiu D, Zhou J. Roles of UndA and MtrC of Shewanella putrefaciens W3-18-1 in iron reduction Bmc Microbiology. 13: 267-267. PMID 24274142 DOI: 10.1186/1471-2180-13-267  0.84
2013 Penton CR, St Louis D, Cole JR, Luo Y, Wu L, Schuur EA, Zhou J, Tiedje JM. Fungal diversity in permafrost and tallgrass prairie soils under experimental warming conditions. Applied and Environmental Microbiology. 79: 7063-72. PMID 24014534 DOI: 10.1128/Aem.01702-13  0.76
2013 Zhang Y, Xie J, Liu M, Tian Z, He Z, van Nostrand JD, Ren L, Zhou J, Yang M. Microbial community functional structure in response to antibiotics in pharmaceutical wastewater treatment systems. Water Research. 47: 6298-308. PMID 23981791 DOI: 10.1016/J.Watres.2013.08.003  0.84
2013 Li M, Mathieu J, Yang Y, Fiorenza S, Deng Y, He Z, Zhou J, Alvarez PJ. Widespread distribution of soluble di-iron monooxygenase (SDIMO) genes in Arctic groundwater impacted by 1,4-dioxane. Environmental Science & Technology. 47: 9950-8. PMID 23909410 DOI: 10.1021/Es402228X  0.76
2013 Zhou A, He Z, Qin Y, Lu Z, Deng Y, Tu Q, Hemme CL, Van Nostrand JD, Wu L, Hazen TC, Arkin AP, Zhou J. StressChip as a high-throughput tool for assessing microbial community responses to environmental stresses. Environmental Science & Technology. 47: 9841-9. PMID 23889170 DOI: 10.1021/Es4018656  0.76
2013 Lin L, Ji Y, Tu Q, Huang R, Teng L, Zeng X, Song H, Wang K, Zhou Q, Li Y, Cui Q, He Z, Zhou J, Xu J. Microevolution from shock to adaptation revealed strategies improving ethanol tolerance and production in Thermoanaerobacter. Biotechnology For Biofuels. 6: 103. PMID 23875846 DOI: 10.1186/1754-6834-6-103  0.8
2013 Qiu D, Wei H, Tu Q, Yang Y, Xie M, Chen J, Pinkerton MH, Liang Y, He Z, Zhou J. Combined genomics and experimental analyses of respiratory characteristics of Shewanella putrefaciens W3-18-1. Applied and Environmental Microbiology. 79: 5250-7. PMID 23811511 DOI: 10.1128/Aem.00619-13  0.84
2013 Lee YJ, van Nostrand JD, Tu Q, Lu Z, Cheng L, Yuan T, Deng Y, Carter MQ, He Z, Wu L, Yang F, Xu J, Zhou J. The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities. The Isme Journal. 7: 1974-84. PMID 23765101 DOI: 10.1038/Ismej.2013.88  0.8
2013 Zhou J, Jiang YH, Deng Y, Shi Z, Zhou BY, Xue K, Wu L, He Z, Yang Y. Random sampling process leads to overestimation of β-diversity of microbial communities. Mbio. 4: e00324-13. PMID 23760464 DOI: 10.1128/Mbio.00324-13  0.84
2013 Zhao FJ, Harris E, Yan J, Ma J, Wu L, Liu W, McGrath SP, Zhou J, Zhu YG. Arsenic methylation in soils and its relationship with microbial arsM abundance and diversity, and as speciation in rice. Environmental Science & Technology. 47: 7147-54. PMID 23750559 DOI: 10.1021/Es304977M  0.76
2013 Tu Q, He Z, Deng Y, Zhou J. Strain/species-specific probe design for microbial identification microarrays. Applied and Environmental Microbiology. 79: 5085-5088. PMID 23747703 DOI: 10.1128/Aem.01124-13  0.8
2013 Li D, Zhou X, Wu L, Zhou J, Luo Y. Contrasting responses of heterotrophic and autotrophic respiration to experimental warming in a winter annual-dominated prairie. Global Change Biology. 19: 3553-64. PMID 23728995 DOI: 10.1111/Gcb.12273  0.8
2013 Xu M, He Z, Deng Y, Wu L, van Nostrand JD, Hobbie SE, Reich PB, Zhou J. Elevated CO₂ influences microbial carbon and nitrogen cycling. Bmc Microbiology. 13: 124. PMID 23718284 DOI: 10.1186/1471-2180-13-124  0.76
2013 Kang S, Van Nostrand JD, Gough HL, He Z, Hazen TC, Stahl DA, Zhou J. Functional gene array-based analysis of microbial communities in heavy metals-contaminated lake sediments. Fems Microbiology Ecology. 86: 200-14. PMID 23710534 DOI: 10.1111/1574-6941.12152  0.76
2013 Siering PL, Wolfe GV, Wilson MS, Yip AN, Carey CM, Wardman CD, Shapiro RS, Stedman KM, Kyle J, Yuan T, Van Nostrand JD, He Z, Zhou J. Microbial biogeochemistry of Boiling Springs Lake: a physically dynamic, oligotrophic, low-pH geothermal ecosystem. Geobiology. 11: 356-76. PMID 23679065 DOI: 10.1111/Gbi.12041  0.76
2013 Chan Y, Van Nostrand JD, Zhou J, Pointing SB, Farrell RL. Functional ecology of an Antarctic Dry Valley. Proceedings of the National Academy of Sciences of the United States of America. 110: 8990-5. PMID 23671121 DOI: 10.1073/Pnas.1300643110  0.72
2013 Xu C, Huang R, Teng L, Wang D, Hemme CL, Borovok I, He Q, Lamed R, Bayer EA, Zhou J, Xu J. Structure and regulation of the cellulose degradome in Clostridium cellulolyticum. Biotechnology For Biofuels. 6: 73. PMID 23657055 DOI: 10.1186/1754-6834-6-73  0.72
2013 Zhou A, Baidoo E, He Z, Mukhopadhyay A, Baumohl JK, Benke P, Joachimiak MP, Xie M, Song R, Arkin AP, Hazen TC, Keasling JD, Wall JD, Stahl DA, Zhou J. Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution. The Isme Journal. 7: 1790-802. PMID 23575373 DOI: 10.1038/Ismej.2013.60  0.76
2013 Zhang Y, Lu Z, Liu S, Yang Y, He Z, Ren Z, Zhou J, Li D. Geochip-based analysis of microbial communities in alpine meadow soils in the Qinghai-Tibetan plateau. Bmc Microbiology. 13: 72. PMID 23537200 DOI: 10.1186/1471-2180-13-72  0.84
2013 Yang Y, Wu L, Lin Q, Yuan M, Xu D, Yu H, Hu Y, Duan J, Li X, He Z, Xue K, van Nostrand J, Wang S, Zhou J. Responses of the functional structure of soil microbial community to livestock grazing in the Tibetan alpine grassland. Global Change Biology. 19: 637-48. PMID 23504798 DOI: 10.1111/Gcb.12065  0.84
2013 Zhou J, Liu W, Deng Y, Jiang YH, Xue K, He Z, Van Nostrand JD, Wu L, Yang Y, Wang A. Stochastic assembly leads to alternative communities with distinct functions in a bioreactor microbial community. Mbio. 4. PMID 23462114 DOI: 10.1128/Mbio.00584-12  0.84
2013 Bartley LE, Peck ML, Kim SR, Ebert B, Manisseri C, Chiniquy DM, Sykes R, Gao L, Rautengarten C, Vega-Sánchez ME, Benke PI, Canlas PE, Cao P, Brewer S, Lin F, ... ... Zhou J, et al. Overexpression of a BAHD acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification. Plant Physiology. 161: 1615-33. PMID 23391577 DOI: 10.1104/Pp.112.208694  0.76
2013 Jiang H, He Q, He Z, Hemme CL, Wu L, Zhou J. Continuous Cellulosic Bioethanol Fermentation by Cyclic Fed-Batch Cocultivation Applied and Environmental Microbiology. 79: 1580-1589. PMID 23275517 DOI: 10.1128/Aem.02617-12  0.8
2013 Xue K, Wu L, Deng Y, He Z, Van Nostrand J, Robertson PG, Schmidt TM, Zhou J. Functional gene differences in soil microbial communities from conventional, low-input, and organic farmlands. Applied and Environmental Microbiology. 79: 1284-92. PMID 23241975 DOI: 10.1128/Aem.03393-12  0.76
2013 Eisenlord SD, Freedman Z, Zak DR, Xue K, He Z, Zhou J. Microbial mechanisms mediating increased soil C storage under elevated atmospheric N deposition. Applied and Environmental Microbiology. 79: 1191-9. PMID 23220961 DOI: 10.1128/Aem.03156-12  0.8
2013 Li X, Deng Y, Li Q, Lu C, Wang J, Zhang H, Zhu J, Zhou J, He Z. Shifts of functional gene representation in wheat rhizosphere microbial communities under elevated ozone Isme Journal. 7: 660-671. PMID 23151639 DOI: 10.1038/Ismej.2012.120  0.76
2013 Bai S, Li J, He Z, Van Nostrand JD, Tian Y, Lin G, Zhou J, Zheng T. GeoChip-based analysis of the functional gene diversity and metabolic potential of soil microbial communities of mangroves. Applied Microbiology and Biotechnology. 97: 7035-48. PMID 23135227 DOI: 10.1007/S00253-012-4496-Z  0.8
2013 Wu HY, Zhou J, Sun JB, Li B, Li LT. Highly polarised Raman scattering anisotropy in tetrathiafulvalene tetracyanoquinodimethane single crystal Materials Research Innovations. 17: 416-419. DOI: 10.1179/143307513X13627319147298  0.84
2013 Li D, Schädel C, Haddix ML, Paul EA, Conant R, Li J, Zhou J, Luo Y. Differential responses of soil organic carbon fractions to warming: Results from an analysis with data assimilation Soil Biology and Biochemistry. 67: 24-30. DOI: 10.1016/J.Soilbio.2013.07.008  0.76
2013 Sul WJ, Asuming-Brempong S, Wang Q, Tourlousse DM, Penton CR, Deng Y, Rodrigues JLM, Adiku SGK, Jones JW, Zhou J, Cole JR, Tiedje JM. Tropical agricultural land management influences on soil microbial communities through its effect on soil organic carbon Soil Biology and Biochemistry. 65: 33-38. DOI: 10.1016/J.Soilbio.2013.05.007  0.76
2013 Wakelin SA, Barratt BIP, Gerard E, Gregg AL, Brodie EL, Andersen GL, DeSantis TZ, Zhou J, He Z, Kowalchuk GA, O'Callaghan M. Shifts in the phylogenetic structure and functional capacity of soil microbial communities follow alteration of native tussock grassland ecosystems Soil Biology & Biochemistry. 57: 675-682. DOI: 10.1016/J.Soilbio.2012.07.003  0.8
2012 Xiong J, He Z, Van Nostrand JD, Luo G, Tu S, Zhou J, Wang G. Assessing the microbial community and functional genes in a vertical soil profile with long-term arsenic contamination. Plos One. 7: e50507. PMID 23226297 DOI: 10.1371/Journal.Pone.0050507  0.8
2012 Nostrand JDV, He Z, Zhou J. Use of functional gene arrays for elucidating in situ biodegradation. Frontiers in Microbiology. 3: 339-339. PMID 23049526 DOI: 10.3389/Fmicb.2012.00339  0.8
2012 Carter MQ, Xue K, Brandl MT, Liu F, Wu L, Louie JW, Mandrell RE, Zhou J. Functional Metagenomics of Escherichia coli O157:H7 Interactions with Spinach Indigenous Microorganisms during Biofilm Formation Plos One. 7. PMID 22957052 DOI: 10.1371/Journal.Pone.0044186  0.76
2012 Wang H, He Z, Lu Z, Zhou J, Van Nostrand JD, Xu X, Zhang Z. Genetic linkage of soil carbon pools and microbial functions in subtropical freshwater wetlands in response to experimental warming. Applied and Environmental Microbiology. 78: 7652-61. PMID 22923398 DOI: 10.1128/Aem.01602-12  0.8
2012 Rajeev L, Hillesland KL, Zane GM, Zhou A, Joachimiak MP, He Z, Zhou J, Arkin AP, Wall JD, Stahl DA. Deletion of the Desulfovibrio vulgaris carbon monoxide sensor invokes global changes in transcription. Journal of Bacteriology. 194: 5783-93. PMID 22904289 DOI: 10.1128/Jb.00749-12  0.76
2012 Beazley MJ, Martinez RJ, Rajan S, Powell J, Piceno YM, Tom LM, Andersen GL, Hazen TC, Van Nostrand JD, Zhou J, Mortazavi B, Sobecky PA. Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill. Plos One. 7: e41305. PMID 22815990 DOI: 10.1371/Journal.Pone.0041305  0.76
2012 Walker CB, Redding-Johanson AM, Baidoo EE, Rajeev L, He Z, Hendrickson EL, Joachimiak MP, Stolyar S, Arkin AP, Leigh JA, Zhou J, Keasling JD, Mukhopadhyay A, Stahl DA. Functional responses of methanogenic archaea to syntrophic growth. The Isme Journal. 6: 2045-55. PMID 22739494 DOI: 10.1038/Ismej.2012.60  0.76
2012 Mason OU, Hazen TC, Borglin S, Chain PS, Dubinsky EA, Fortney JL, Han J, Holman HY, Hultman J, Lamendella R, Mackelprang R, Malfatti S, Tom LM, Tringe SG, Woyke T, ... Zhou J, et al. Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. The Isme Journal. 6: 1715-27. PMID 22717885 DOI: 10.1038/Ismej.2012.59  0.76
2012 Reith F, Brugger J, Zammit CM, Gregg AL, Goldfarb KC, Andersen GL, DeSantis TZ, Piceno YM, Brodie EL, Lu Z, He Z, Zhou J, Wakelin SA. Influence of geogenic factors on microbial communities in metallogenic Australian soils. The Isme Journal. 6: 2107-2118. PMID 22673626 DOI: 10.1038/Ismej.2012.48  0.8
2012 Dassa B, Borovok I, Lamed R, Henrissat B, Coutinho P, Hemme CL, Huang Y, Zhou J, Bayer EA. Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system Bmc Genomics. 13. PMID 22646801 DOI: 10.1186/1471-2164-13-210  0.76
2012 Ding GC, Heuer H, He Z, Xie J, Zhou J, Smalla K. More functional genes and convergent overall functional patterns detected by geochip in phenanthrene-spiked soils Fems Microbiology Ecology. 82: 148-156. PMID 22587620 DOI: 10.1111/J.1574-6941.2012.01413.X  0.76
2012 Lu Z, He Z, Parisi VA, Kang S, Deng Y, Van Nostrand JD, Masoner JR, Cozzarelli IM, Suflita JM, Zhou J. GeoChip-based analysis of microbial functional gene diversity in a landfill leachate-contaminated aquifer. Environmental Science & Technology. 46: 5824-33. PMID 22533634 DOI: 10.1021/Es300478J  0.76
2012 Wang XW, Zhang CA, Wang PL, Zhao J, Zhang W, Ji JH, Hua K, Zhou J, Yang XB, Li XP. Enhanced performance of biodegradable poly(butylene succinate)/graphene oxide nanocomposites via in situ polymerization. Langmuir : the Acs Journal of Surfaces and Colloids. 28: 7091-5. PMID 22420718 DOI: 10.1021/La204894H  0.56
2012 Liang Y, Van Nostrand JD, N'guessan LA, Peacock AD, Deng Y, Long PE, Resch CT, Wu L, He Z, Li G, Hazen TC, Lovley DR, Zhou J. Microbial functional gene diversity with a shift of subsurface redox conditions during In Situ uranium reduction. Applied and Environmental Microbiology. 78: 2966-72. PMID 22327592 DOI: 10.1128/Aem.06528-11  0.8
2012 Deng Y, He Z, Xu M, Qin Y, Van Nostrand JD, Wu L, Roe BA, Wiley G, Hobbie SE, Reich PB, Zhou J. Elevated carbon dioxide alters the structure of soil microbial communities. Applied and Environmental Microbiology. 78: 2991-5. PMID 22307288 DOI: 10.1128/Aem.06924-11  0.32
2012 Huang WE, Zhou J. When single cell technology meets omics, the new toolbox of analytical biotechnology is emerging. Current Opinion in Biotechnology. 23: 1. PMID 22244690 DOI: 10.1016/J.Copbio.2011.12.020  0.36
2012 Liang Y, Gao H, Guo X, Chen J, Qiu G, He Z, Zhou J, Liu X. Transcriptome analysis of pellicle formation of Shewanella oneidensis. Archives of Microbiology. 194: 473-82. PMID 22228442 DOI: 10.1007/S00203-011-0782-X  0.8
2012 He Z, Van Nostrand JD, Zhou J. Applications of functional gene microarrays for profiling microbial communities. Current Opinion in Biotechnology. 23: 460-6. PMID 22226464 DOI: 10.1016/J.Copbio.2011.12.021  0.8
2012 Zhou A, Chen YI, Zane GM, He Z, Hemme CL, Joachimiak MP, Baumohl JK, He Q, Fields MW, Arkin AP, Wall JD, Hazen TC, Zhou J. Functional characterization of Crp/Fnr-type global transcriptional regulators in Desulfovibrio vulgaris Hildenborough. Applied and Environmental Microbiology. 78: 1168-77. PMID 22156435 DOI: 10.1128/Aem.05666-11  0.76
2012 Wawrik B, Mendivelso M, Parisi VA, Suflita JM, Davidova IA, Marks CR, Van Nostrand JD, Liang Y, Zhou J, Huizinga BJ, StrÄ…poć D, Callaghan AV. Field and laboratory studies on the bioconversion of coal to methane in the San Juan Basin. Fems Microbiology Ecology. 81: 26-42. PMID 22146015 DOI: 10.1111/J.1574-6941.2011.01272.X  0.76
2012 He Z, Deng Y, Zhou J. Development of functional gene microarrays for microbial community analysis. Current Opinion in Biotechnology. 23: 49-55. PMID 22100036 DOI: 10.1016/J.Copbio.2011.11.001  0.8
2012 Lomax C, Liu WJ, Wu L, Xue K, Xiong J, Zhou J, McGrath SP, Meharg AA, Miller AJ, Zhao FJ. Methylated arsenic species in plants originate from soil microorganisms. The New Phytologist. 193: 665-72. PMID 22098145 DOI: 10.1111/J.1469-8137.2011.03956.X  0.76
2012 Wawrik B, Boling WB, Van Nostrand JD, Xie J, Zhou J, Bronk DA. Assimilatory nitrate utilization by bacteria on the West Florida Shelf as determined by stable isotope probing and functional microarray analysis. Fems Microbiology Ecology. 79: 400-11. PMID 22092701 DOI: 10.1111/J.1574-6941.2011.01226.X  0.76
2012 Liu W, Wang A, Sun D, Ren N, Zhang Y, Zhou J. Characterization of microbial communities during anode biofilm reformation in a two-chambered microbial electrolysis cell (MEC). Journal of Biotechnology. 157: 628-32. PMID 21939699 DOI: 10.1016/J.Jbiotec.2011.09.010  0.84
2012 Yergeau E, Bokhorst S, Kang S, Zhou J, Greer CW, Aerts R, Kowalchuk GA. Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments Isme Journal. 6: 692-702. PMID 21938020 DOI: 10.1038/Ismej.2011.124  0.76
2012 Lu Z, Deng Y, Van Nostrand JD, He Z, Voordeckers J, Zhou A, Lee YJ, Mason OU, Dubinsky EA, Chavarria KL, Tom LM, Fortney JL, Lamendella R, Jansson JK, D'haeseleer P, ... ... Zhou J, et al. Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume. The Isme Journal. 6: 451-60. PMID 21814288 DOI: 10.1038/Ismej.2011.91  0.76
2012 Trivedi P, He Z, Van Nostrand JD, Albrigo G, Zhou J, Wang N. Huanglongbing alters the structure and functional diversity of microbial communities associated with citrus rhizosphere. The Isme Journal. 6: 363-83. PMID 21796220 DOI: 10.1038/Ismej.2011.100  0.8
2012 He Z, Piceno Y, Deng Y, Xu M, Lu Z, Desantis T, Andersen G, Hobbie SE, Reich PB, Zhou J. The phylogenetic composition and structure of soil microbial communities shifts in response to elevated carbon dioxide. The Isme Journal. 6: 259-72. PMID 21796217 DOI: 10.1038/Ismej.2011.99  0.76
2012 Xu X, Niu S, Sherry RA, Zhou X, Zhou J, Luo Y. Interannual variability in responses of belowground net primary productivity (NPP) and NPP partitioning to long-term warming and clipping in a tallgrass prairie Global Change Biology. 18: 1648-1656. DOI: 10.1111/J.1365-2486.2012.02651.X  0.72
2012 Xu X, Luo Y, Zhou J. Carbon quality and the temperature sensitivity of soil organic carbon decomposition in a tallgrass prairie Soil Biology & Biochemistry. 50: 142-148. DOI: 10.1016/J.Soilbio.2012.03.007  0.68
2012 Xie J, Wu L, Nostrand JDv, He Z, Lü Z, Yu H, Xiong J, Liu X, Zhou J. Improvements on environmental DNA extraction and purification procedures for matagenomic analysis Journal of Central South University. 19: 3055-3063. DOI: 10.1007/S11771-012-1378-6  0.8
2012 Xu X, Sherry RA, Niu S, Zhou J, Luo Y. Long-term experimental warming decreased labile soil organic carbon in a tallgrass prairie Plant and Soil. 361: 307-315. DOI: 10.1007/S11104-012-1265-9  0.68
2011 Lin L, Song H, Tu Q, Qin Y, Zhou A, Liu W, He Z, Zhou J, Xu J. The Thermoanaerobacter Glycobiome Reveals Mechanisms of Pentose and Hexose Co-Utilization in Bacteria Plos Genetics. 7. PMID 22022280 DOI: 10.1371/Journal.Pgen.1002318  0.8
2011 Hemme CL, Fields MW, He Q, Deng Y, Lin L, Tu Q, Mouttaki H, Zhou A, Feng X, Zuo Z, Ramsay BD, He Z, Wu L, Van Nostrand J, Xu J, ... ... Zhou J, et al. Correlation of genomic and physiological traits of thermoanaerobacter species with biofuel yields. Applied and Environmental Microbiology. 77: 7998-8008. PMID 21948836 DOI: 10.1128/Aem.05677-11  0.76
2011 He Q, Hemme CL, Jiang H, He Z, Zhou J. Mechanisms of enhanced cellulosic bioethanol fermentation by co-cultivation of Clostridium and Thermoanaerobacter spp. Bioresource Technology. 102: 9586-9592. PMID 21868218 DOI: 10.1016/J.Biortech.2011.07.098  0.8
2011 Liu Y, Shi ZB, Dong YB, Sun HJ, Sun AP, Li YG, Xia ZW, Li W, Ding XT, Xiao WW, Zhou Y, Zhou J, Rao J, Liu ZT, Yang QW, et al. Observation of turbulence suppression after electron-cyclotron-resonance-heating switch-off on the HL-2A tokamak. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 84: 016403. PMID 21867318 DOI: 10.1103/Physreve.84.016403  0.72
2011 Liu A, Wu L, He Z, Zhou J. Development of highly fluorescent silica nanoparticles chemically doped with organic dye for sensitive DNA microarray detection. Analytical and Bioanalytical Chemistry. 401: 2003-11. PMID 21822973 DOI: 10.1007/S00216-011-5258-Y  0.8
2011 Sundararajan A, Kurowski J, Yan T, Klingeman DM, Joachimiak MP, Zhou J, Naranjo B, Gralnick JA, Fields MW. Shewanella oneidensis MR-1 sensory box protein involved in aerobic and anoxic growth. Applied and Environmental Microbiology. 77: 4647-56. PMID 21602393 DOI: 10.1128/Aem.03003-10  0.76
2011 Li B, Cao W, Zhou J, Luo F. Understanding and predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using domain genetic interactions. Bmc Systems Biology. 5: 73. PMID 21586150 DOI: 10.1186/1752-0509-5-73  0.76
2011 Zhou J, He Q, Hemme CL, Mukhopadhyay A, Hillesland K, Zhou A, He Z, Van Nostrand JD, Hazen TC, Stahl DA, Wall JD, Arkin AP. How sulphate-reducing microorganisms cope with stress: lessons from systems biology. Nature Reviews. Microbiology. 9: 452-66. PMID 21572460 DOI: 10.1038/Nrmicro2575  0.76
2011 Van Nostrand JD, Wu L, Wu WM, Huang Z, Gentry TJ, Deng Y, Carley J, Carroll S, He Z, Gu B, Luo J, Criddle CS, Watson DB, Jardine PM, Marsh TL, ... ... Zhou J, et al. Dynamics of microbial community composition and function during in situ bioremediation of a uranium-contaminated aquifer. Applied and Environmental Microbiology. 77: 3860-9. PMID 21498771 DOI: 10.1128/Aem.01981-10  0.76
2011 Wang J, Van Nostrand JD, Wu L, He Z, Li G, Zhou J. Microarray-based evaluation of whole-community genome DNA amplification methods. Applied and Environmental Microbiology. 77: 4241-5. PMID 21498751 DOI: 10.1128/Aem.01834-10  0.8
2011 Zhou J, Wu L, Deng Y, Zhi X, Jiang YH, Tu Q, Xie J, Van Nostrand JD, He Z, Yang Y. Reproducibility and quantitation of amplicon sequencing-based detection. The Isme Journal. 5: 1303-13. PMID 21346791 DOI: 10.1038/Ismej.2011.11  0.84
2011 Xie J, He Z, Liu X, Liu X, Van Nostrand JD, Deng Y, Wu L, Zhou J, Qiu G. GeoChip-based analysis of the functional gene diversity and metabolic potential of microbial communities in acid mine drainage. Applied and Environmental Microbiology. 77: 991-9. PMID 21097602 DOI: 10.1128/Aem.01798-10  0.8
2011 Liang Y, Van Nostrand JD, Deng Y, He Z, Wu L, Zhang X, Li G, Zhou J. Functional gene diversity of soil microbial communities from five oil-contaminated fields in China. The Isme Journal. 5: 403-13. PMID 20861922 DOI: 10.1038/Ismej.2010.142  0.8
2011 He Z, Nostrand JDV, Deng Y, Zhou J. Development and applications of functional gene microarrays in the analysis of the functional diversity, composition, and structure of microbial communities Frontiers of Environmental Science & Engineering in China. 5: 1-20. DOI: 10.1007/S11783-011-0301-Y  0.8
2011 Xie JP, Jiang HC, Liu XX, Liu XD, Zhou JZ, Qiu GZ. 16s rDNA based microbial diversity analysis of eleven acid mine drainages obtained from three Chinese copper mines Journal of Central South University of Technology (English Edition). 18: 1930-1939. DOI: 10.1007/S11771-011-0925-X  0.76
2010 Gao H, Barua S, Liang Y, Wu L, Dong Y, Reed S, Chen J, Culley D, Kennedy D, Yang Y, He Z, Nealson KH, Fredrickson JK, Tiedje JM, Romine M, ... Zhou J, et al. Impacts of Shewanella oneidensis c-type cytochromes on aerobic and anaerobic respiration. Microbial Biotechnology. 3: 455-66. PMID 21255343 DOI: 10.1111/J.1751-7915.2010.00181.X  0.76
2010 Gao H, Wang X, Yang ZK, Chen J, Liang Y, Chen H, Palzkill T, Zhou J. Physiological roles of ArcA, Crp, and EtrA and their interactive control on aerobic and anaerobic respiration in Shewanella oneidensis. Plos One. 5: e15295. PMID 21203399 DOI: 10.1371/Journal.Pone.0015295  0.84
2010 Liang Y, Gao H, Chen J, Dong Y, Wu L, He Z, Liu X, Qiu G, Zhou J. Pellicle formation in Shewanella oneidensis. Bmc Microbiology. 10: 291. PMID 21080927 DOI: 10.1186/1471-2180-10-291  0.8
2010 Mason OU, Nakagawa T, Rosner M, Van Nostrand JD, Zhou J, Maruyama A, Fisk MR, Giovannoni SJ. First investigation of the microbiology of the deepest layer of ocean crust. Plos One. 5: e15399. PMID 21079766 DOI: 10.1371/Journal.Pone.0015399  0.76
2010 Parnell JJ, Rompato G, Latta LC, Pfrender ME, Van Nostrand JD, He Z, Zhou J, Andersen G, Champine P, Ganesan B, Weimer BC. Functional biogeography as evidence of gene transfer in hypersaline microbial communities. Plos One. 5: e12919. PMID 20957119 DOI: 10.1371/Journal.Pone.0012919  0.76
2010 Yang Y, McCue LA, Parsons AB, Feng S, Zhou J. The tricarboxylic acid cycle in Shewanella oneidensis is independent of Fur and RyhB control. Bmc Microbiology. 10: 264. PMID 20950482 DOI: 10.1186/1471-2180-10-264  0.84
2010 Zhou J, Deng Y, Luo F, He Z, Tu Q, Zhi X. Functional Molecular Ecological Networks Mbio. 1. PMID 20941329 DOI: 10.1128/Mbio.00169-10  0.8
2010 Epelde L, Becerril JM, Kowalchuk GA, Deng Y, Zhou J, Garbisu C. Impact of metal pollution and Thlaspi caerulescens growth on soil microbial communities. Applied and Environmental Microbiology. 76: 7843-53. PMID 20935131 DOI: 10.1128/Aem.01045-10  0.72
2010 Hemme CL, Mouttaki H, Lee YJ, Zhang G, Goodwin L, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Tice H, Saunders E, Brettin T, Detter JC, Han CS, Pitluck S, ... ... Zhou J, et al. Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production. Journal of Bacteriology. 192: 6494-6. PMID 20889752 DOI: 10.1128/Jb.01064-10  0.76
2010 Lin L, Song H, Ji Y, He Z, Pu Y, Zhou J, Xu J. Ultrasound-mediated DNA transformation in thermophilic gram-positive anaerobes. Plos One. 5: e12582. PMID 20838444 DOI: 10.1371/Journal.Pone.0012582  0.8
2010 Xiong J, Wu L, Tu S, Van Nostrand JD, He Z, Zhou J, Wang G. Microbial communities and functional genes associated with soil arsenic contamination and the rhizosphere of the arsenic-hyperaccumulating plant Pteris vittata L. Applied and Environmental Microbiology. 76: 7277-84. PMID 20833780 DOI: 10.1128/Aem.00500-10  0.8
2010 Liu W, Wang A, Cheng S, Logan BE, Yu H, Deng Y, Nostrand JD, Wu L, He Z, Zhou J. Geochip-based functional gene analysis of anodophilic communities in microbial electrolysis cells under different operational modes. Environmental Science & Technology. 44: 7729-35. PMID 20831218 DOI: 10.1021/Es100608A  0.8
2010 Reganold JP, Andrews PK, Reeve JR, Carpenter-Boggs L, Schadt CW, Alldredge JR, Ross CF, Davies NM, Zhou J. Fruit and soil quality of organic and conventional strawberry agroecosystems. Plos One. 5. PMID 20824185 DOI: 10.1371/Journal.Pone.0012346  0.76
2010 Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL, ... ... Zhou J, et al. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science (New York, N.Y.). 330: 204-8. PMID 20736401 DOI: 10.1126/Science.1195979  0.76
2010 Cardenas E, Wu WM, Leigh MB, Carley J, Carroll S, Gentry T, Luo J, Watson D, Gu B, Ginder-Vogel M, Kitanidis PK, Jardine PM, Zhou J, Criddle CS, Marsh TL, et al. Significant association between sulfate-reducing bacteria and uranium-reducing microbial communities as revealed by a combined massively parallel sequencing-indicator species approach. Applied and Environmental Microbiology. 76: 6778-86. PMID 20729318 DOI: 10.1128/Aem.01097-10  0.76
2010 Wu WM, Carley J, Green SJ, Luo J, Kelly SD, Van Nostrand J, Lowe K, Mehlhorn T, Carroll S, Boonchayanant B, Löfller FE, Watson D, Kemner KM, Zhou J, Kitanidis PK, et al. Effects of nitrate on the stability of uranium in a bioreduced region of the subsurface. Environmental Science & Technology. 44: 5104-11. PMID 20527772 DOI: 10.1021/Es1000837  0.76
2010 Zhou A, He Z, Redding-Johanson AM, Mukhopadhyay A, Hemme CL, Joachimiak MP, Luo F, Deng Y, Bender KS, He Q, Keasling JD, Stahl DA, Fields MW, Hazen TC, Arkin AP, ... ... Zhou J, et al. Hydrogen peroxide-induced oxidative stress responses in Desulfovibrio vulgaris Hildenborough. Environmental Microbiology. 12: 2645-57. PMID 20482586 DOI: 10.1111/J.1462-2920.2010.02234.X  0.76
2010 He Q, He Z, Joyner DC, Joachimiak M, Price MN, Yang ZK, Yen HC, Hemme CL, Chen W, Fields MM, Stahl DA, Keasling JD, Keller M, Arkin AP, Hazen TC, ... ... Zhou J, et al. Impact of elevated nitrate on sulfate-reducing bacteria: a comparative study of Desulfovibrio vulgaris. The Isme Journal. 4: 1386-97. PMID 20445634 DOI: 10.1038/Ismej.2010.59  0.76
2010 He Z, Deng Y, Van Nostrand JD, Tu Q, Xu M, Hemme CL, Li X, Wu L, Gentry TJ, Yin Y, Liebich J, Hazen TC, Zhou J. GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. The Isme Journal. 4: 1167-79. PMID 20428223 DOI: 10.1038/Ismej.2010.46  0.76
2010 Reeve JR, Schadt CW, Carpenter-Boggs L, Kang S, Zhou J, Reganold JP. Effects of soil type and farm management on soil ecological functional genes and microbial activities. The Isme Journal. 4: 1099-107. PMID 20376100 DOI: 10.1038/Ismej.2010.42  0.76
2010 He Z, Xu M, Deng Y, Kang S, Kellogg L, Wu L, Van Nostrand JD, Hobbie SE, Reich PB, Zhou J. Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2. Ecology Letters. 13: 564-75. PMID 20337697 DOI: 10.1111/J.1461-0248.2010.01453.X  0.76
2010 Xu M, Wu WM, Wu L, He Z, Van Nostrand JD, Deng Y, Luo J, Carley J, Ginder-Vogel M, Gentry TJ, Gu B, Watson D, Jardine PM, Marsh TL, Tiedje JM, ... ... Zhou J, et al. Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation. The Isme Journal. 4: 1060-70. PMID 20237512 DOI: 10.1038/Ismej.2010.31  0.76
2010 Hemme CL, Deng Y, Gentry TJ, Fields MW, Wu L, Barua S, Barry K, Tringe SG, Watson DB, He Z, Hazen TC, Tiedje JM, Rubin EM, Zhou J. Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. The Isme Journal. 4: 660-72. PMID 20182523 DOI: 10.1038/Ismej.2009.154  0.76
2010 Liang Y, He Z, Wu L, Deng Y, Li G, Zhou J. Development of a common oligonucleotide reference standard for microarray data normalization and comparison across different microbial communities. Applied and Environmental Microbiology. 76: 1088-94. PMID 20038701 DOI: 10.1128/Aem.02749-09  0.8
2010 He Z, Zhou A, Baidoo E, He Q, Joachimiak MP, Benke P, Phan R, Mukhopadhyay A, Hemme CL, Huang K, Alm EJ, Fields MW, Wall J, Stahl D, Hazen TC, ... ... Zhou J, et al. Global transcriptional, physiological, and metabolite analyses of the responses of Desulfovibrio vulgaris hildenborough to salt adaptation. Applied and Environmental Microbiology. 76: 1574-86. PMID 20038696 DOI: 10.1128/Aem.02141-09  0.76
2010 Kimes NE, Van Nostrand JD, Weil E, Zhou J, Morris PJ. Microbial functional structure of Montastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies Environmental Microbiology. 12: 541-556. PMID 19958382 DOI: 10.1111/J.1462-2920.2009.02113.X  0.76
2010 Wu L, Yi TY, Nostrand JV, Zhou J. Phylogenetic Analysis of Shewanella Strains by DNA Relatedness Derived from Whole Genome Microarray DNA-DNA Hybridization and Comparison with Other Methods Lawrence Berkeley National Laboratory. DOI: 10.2172/986917  0.8
2010 Lu Z, He Z, Parisi V, Kang S, Deng Y, Nostrand JV, Masoner J, Cozzarelli I, Suflita J, Zhou J. GeoChip-based Analysis of Groundwater Microbial Diversity in Norman Landfill Lawrence Berkeley National Laboratory. DOI: 10.2172/986222  0.8
2010 He Z, Deng Y, Nostrand JDV, Tu Q, Xu M, Hemme CL, Li X, Wu L, Gentry TJ, Yin Y, Liebich J, Hazen TC, Zhou J. GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity Lawrence Berkeley National Laboratory. DOI: 10.2172/986221  0.8
2010 Liang Y, Wu L, Clark I, Xue K, Nostrand JDV, Deng Y, He Z, Hirsch P, Mcgrath S, Zhou J. Taxa-area Relationship (TAR) of Microbial Functional Genes with Long-TGerm Fertilization Lawrence Berkeley National Laboratory. DOI: 10.2172/985942  0.8
2010 Zhou A, Hillesland K, He Z, Joachimiak M, Zane G, Dehal P, Arkin A, Stahl D, Wall J, Hazen T, Zhou J, Baidoo E, Benke P, Mukhopadhyay A. Genetic Adaptation to Salt Stress in Experimental Evolution of Desulfovibrio vulgaris Hildenborough Lawrence Berkeley National Laboratory. DOI: 10.2172/985929  0.8
2010 Nostrand JV, Waldron P, Wu W, Zhou B, Wu L, Deng Y, Carley J, He Z, Gu B, Luo J, Criddle C, Jardine P, Hazen T, Zhou J. Effects of Nitrate Exposure on the Functional Structure of a Microbial Community in a Uranium-contaminated Aquifer Lawrence Berkeley National Laboratory. DOI: 10.2172/985928  0.8
2010 Deng Y, Zhou J, Luo F, He Z, Tu Q, Zhi X. Functional Ecological Gene Networks to Reveal the Changes Among Microbial Interactions Under Elevated Carbon Dioxide Conditions Lawrence Berkeley National Laboratory. DOI: 10.2172/985926  0.8
2010 Zhou J, He Z, Nostrand JDV, Wu L, Deng Y. Applying GeoChip analysis to disparate microbial communities Microbe Magazine. 5: 60-65. DOI: 10.1128/Microbe.5.60.1  0.8
2010 Gao W, Gentry TJ, Mehlhorn TL, Carroll SL, Jardine PM, Zhou J. Characterization of Co(III) EDTA-reducing bacteria in metal- and radionuclide-contaminated groundwater Geomicrobiology Journal. 27: 93-100. DOI: 10.1080/01490450903408112  0.76
2010 Wang A, Liu W, Deng Y, Nostrand JDVNJDV, Zhou J. Multiple community states of planktonic communities on functional gene structure in microbial electrolysis cell (MEC) Journal of Biotechnology. 150: 239-240. DOI: 10.1016/J.Jbiotec.2010.09.097  0.72
2010 Wang A, Liu W, Ren N, Zhou J, Cheng S. Key factors affecting microbial anode potential in a microbial electrolysis cell for H2 production International Journal of Hydrogen Energy. 35: 13481-13487. DOI: 10.1016/J.Ijhydene.2009.11.125  0.6
2009 Zhou J. Predictive microbial ecology Microbial Biotechnology. 2: 154-156. PMID 21261909 DOI: 10.1111/J.1751-7915.2009.00090_21.X  0.76
2009 Luo W, Kelly SD, Kemner KM, Watson D, Zhou J, Jardine PM, Gu B. Sequestering uranium and technetium through co-precipitation with aluminum in a contaminated acidic environment. Environmental Science & Technology. 43: 7516-22. PMID 19848170 DOI: 10.1021/Es900731A  0.76
2009 Liang Y, Li G, Van Nostrand JD, He Z, Wu L, Deng Y, Zhang X, Zhou J. Microarray-based analysis of microbial functional diversity along an oil contamination gradient in oil field. Fems Microbiology Ecology. 70: 324-33. PMID 19780823 DOI: 10.1111/J.1574-6941.2009.00774.X  0.8
2009 Walker CB, Stolyar S, Chivian D, Pinel N, Gabster JA, Dehal PS, He Z, Yang ZK, Yen HC, Zhou J, Wall JD, Hazen TC, Arkin AP, Stahl DA. Contribution of mobile genetic elements to Desulfovibrio vulgaris genome plasticity. Environmental Microbiology. 11: 2244-52. PMID 19737303 DOI: 10.1111/J.1462-2920.2009.01946.X  0.76
2009 Van Nostrand JD, Wu WM, Wu L, Deng Y, Carley J, Carroll S, He Z, Gu B, Luo J, Criddle CS, Watson DB, Jardine PM, Marsh TL, Tiedje JM, Hazen TC, ... Zhou J, et al. GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer. Environmental Microbiology. 11: 2611-26. PMID 19624708 DOI: 10.1111/J.1462-2920.2009.01986.X  0.76
2009 He Q, Lokken PM, Chen S, Zhou J. Characterization of the impact of acetate and lactate on ethanolic fermentation by Thermoanaerobacter ethanolicus. Bioresource Technology. 100: 5955-5965. PMID 19608413 DOI: 10.1016/J.Biortech.2009.06.084  0.76
2009 Walker CB, He Z, Yang ZK, Ringbauer JA, He Q, Zhou J, Voordouw G, Wall JD, Arkin AP, Hazen TC, Stolyar S, Stahl DA. The electron transfer system of syntrophically grown Desulfovibrio vulgaris. Journal of Bacteriology. 191: 5793-801. PMID 19581361 DOI: 10.1128/Jb.00356-09  0.76
2009 Waldron PJ, Wu L, Van Nostrand JD, Schadt CW, He Z, Watson DB, Jardine PM, Palumbo AV, Hazen TC, Zhou J. Functional gene array-based analysis of microbial community structure in groundwaters with a gradient of contaminant levels. Environmental Science & Technology. 43: 3529-34. PMID 19544850 DOI: 10.1021/Es803423P  0.76
2009 Feng X, Mouttaki H, Lin L, Huang R, Wu B, Hemme CL, He Z, Zhang B, Hicks LM, Xu J, Zhou J, Tang YJ. Characterization of the central metabolic pathways in Thermoanaerobacter sp. strain X514 via isotopomer-assisted metabolite analysis. Applied and Environmental Microbiology. 75: 5001-8. PMID 19525270 DOI: 10.1128/Aem.00715-09  0.76
2009 Gao H, Yang ZK, Barua S, Reed SB, Romine MF, Nealson KH, Fredrickson JK, Tiedje JM, Zhou J. Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA. The Isme Journal. 3: 966-76. PMID 19387485 DOI: 10.1038/Ismej.2009.40  0.76
2009 Yang Y, Harris DP, Luo F, Xiong W, Joachimiak M, Wu L, Dehal P, Jacobsen J, Yang Z, Palumbo AV, Arkin AP, Zhou J. Snapshot of iron response in Shewanella oneidensis by gene network reconstruction. Bmc Genomics. 10: 131. PMID 19321007 DOI: 10.1186/1471-2164-10-131  0.76
2009 Wang F, Zhou H, Meng J, Peng X, Jiang L, Sun P, Zhang C, Van Nostrand JD, Deng Y, He Z, Wu L, Zhou J, Xiao X. GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent. Proceedings of the National Academy of Sciences of the United States of America. 106: 4840-5. PMID 19273854 DOI: 10.1073/Pnas.0810418106  0.8
2009 Liang Y, Nostrand JD, Wang J, Zhang X, Zhou J, Li G. Microarray-based functional gene analysis of soil microbial communities during ozonation and biodegradation of crude oil. Chemosphere. 75: 193-9. PMID 19144375 DOI: 10.1016/J.Chemosphere.2008.12.007  0.8
2009 Mason OU, Di Meo-Savoie CA, Van Nostrand JD, Zhou J, Fisk MR, Giovannoni SJ. Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts. The Isme Journal. 3: 231-42. PMID 18843298 DOI: 10.1038/Ismej.2008.92  0.76
2009 Hwang C, Wu W, Gentry TJ, Carley J, Corbin GA, Carroll SL, Watson DB, Jardine PM, Zhou J, Criddle CS, Fields MW. Bacterial community succession during in situ uranium bioremediation: spatial similarities along controlled flow paths. The Isme Journal. 3: 47-64. PMID 18769457 DOI: 10.1038/Ismej.2008.77  0.76
2009 Wang R, Zhou J, Huang XG, Sun L, Li LT. Oxyfluoride Glass-Ceramic Composites for Low Temperature Co-Fired Ceramic Substrate Ferroelectrics. 388: 31-35. DOI: 10.1080/00150190902963716  0.84
2008 Rodrigues DF, Ivanova N, He Z, Huebner M, Zhou J, Tiedje JM. Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach. Bmc Genomics. 9: 547. PMID 19019206 DOI: 10.1186/1471-2164-9-547  0.76
2008 Deng Y, He Z, Van Nostrand JD, Zhou J. Design and analysis of mismatch probes for long oligonucleotide microarrays. Bmc Genomics. 9: 491. PMID 18928550 DOI: 10.1186/1471-2164-9-491  0.8
2008 Yang Y, Zhu M, Wu L, Zhou J. Assessment of data processing to improve reliability of microarray experiments using genomic DNA reference Bmc Genomics. 9: 1-9. PMID 18831796 DOI: 10.1186/1471-2164-9-S2-S5  0.84
2008 Gao H, Pattison D, Yan T, Klingeman DM, Wang X, Petrosino J, Hemphill L, Wan X, Leaphart AB, Weinstock GM, Palzkill T, Zhou J. Generation and validation of a Shewanella oneidensis MR-1 clone set for protein expression and phage display. Plos One. 3: e2983. PMID 18714347 DOI: 10.1371/Journal.Pone.0002983  0.76
2008 Wang X, Gao H, Shen Y, Weinstock GM, Zhou J, Palzkill T. A high-throughput percentage-of-binding strategy to measure binding energies in DNA-protein interactions: application to genome-scale site discovery. Nucleic Acids Research. 36: 4863-71. PMID 18653527 DOI: 10.1093/Nar/Gkn477  0.76
2008 Yin H, Cao L, Xie M, Chen Q, Qiu G, Zhou J, Wu L, Wang D, Liu X. Bacterial diversity based on 16S rRNA and gyrB genes at Yinshan mine, China. Systematic and Applied Microbiology. 31: 302-11. PMID 18603397 DOI: 10.1016/J.Syapm.2008.05.003  0.8
2008 Wu L, Kellogg L, Devol AH, Tiedje JM, Zhou J. Microarray-based characterization of microbial community functional structure and heterogeneity in marine sediments from the Gulf of Mexico. Applied and Environmental Microbiology. 74: 4516-29. PMID 18515485 DOI: 10.1128/Aem.02751-07  0.76
2008 Zhou J, Kang S, Schadt CW, Garten CT. Spatial scaling of functional gene diversity across various microbial taxa. Proceedings of the National Academy of Sciences of the United States of America. 105: 7768-73. PMID 18509054 DOI: 10.1073/Pnas.0709016105  0.76
2008 Cardenas E, Wu WM, Leigh MB, Carley J, Carroll S, Gentry T, Luo J, Watson D, Gu B, Ginder-Vogel M, Kitanidis PK, Jardine PM, Zhou J, Criddle CS, Marsh TL, et al. Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels. Applied and Environmental Microbiology. 74: 3718-29. PMID 18456853 DOI: 10.1128/Aem.02308-07  0.76
2008 Yang Y, Harris DP, Luo F, Wu L, Parsons AB, Palumbo AV, Zhou J. Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response. Bmc Genomics. 9: S11. PMID 18366600 DOI: 10.1186/1471-2164-9-S1-S11  0.76
2008 He Z, Zhou J. Empirical Evaluation of a New Method for Calculating Signal-to-Noise Ratio for Microarray Data Analysis Applied and Environmental Microbiology. 74: 2957-2966. PMID 18344333 DOI: 10.1128/Aem.02536-07  0.8
2008 Wu L, Liu X, Fields MW, Thompson DK, Bagwell CE, Tiedje JM, Hazen TC, Zhou J. Microarray-based whole-genome hybridization as a tool for determining procaryotic species relatedness. The Isme Journal. 2: 642-55. PMID 18309358 DOI: 10.1038/Ismej.2008.23  0.76
2008 Gao H, Wang X, Yang ZK, Palzkill T, Zhou J. Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses. Bmc Genomics. 9: 42. PMID 18221523 DOI: 10.1186/1471-2164-9-42  0.84
2008 Pereira PM, He Q, Xavier AV, Zhou J, Pereira IAC, Louro RO. Transcriptional response of Desulfovibrio vulgaris Hildenborough to oxidative stress mimicking environmental conditions Archives of Microbiology. 189: 451-461. PMID 18060664 DOI: 10.1007/S00203-007-0335-5  0.76
2008 Pereira PM, He Q, Valente FMA, Xavier AV, Zhou J, Pereira IAC, Louro RO. Energy metabolism in Desulfovibrio vulgaris Hildenborough: Insights from transcriptome analysis Antonie Van Leeuwenhoek, International Journal of General and Molecular Microbiology. 93: 347-362. PMID 18060515 DOI: 10.1007/S10482-007-9212-0  0.76
2008 Yin H, Cao L, Qiu G, Wang D, Kellogg L, Zhou J, Liu X, Dai Z, Ding J, Liu X. Molecular diversity of 16S rRNA and gyrB genes in copper mines. Archives of Microbiology. 189: 101-10. PMID 17957354 DOI: 10.1007/S00203-007-0298-6  0.76
2008 Yin H, Qiu G, Wu L, Xie M, Zhou J, Dai Z, Wang D, Kellogg L, Cao L, Liu X. Microbial community diversity and changes associated with a mine drainage gradient at the Dexing copper mine, China Aquatic Microbial Ecology. 51: 67-76. DOI: 10.3354/Ame01172  0.76
2008 Bretschger O, Obraztsova A, Sturm CA, In SC, Gorby YA, Reed SB, Culley DE, Reardon CL, Barua S, Romine MF, Zhou J, Beliaev AS, Bouhenni R, Saffarini D, Mansfeld F, et al. Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants (Applied and Environmental Microbiology (2007) 73, 21, (7003-7012)) Applied and Environmental Microbiology. 74: 553. DOI: 10.1128/Aem.02560-07  0.76
2007 Zhou X, Zhou J. Antibody-Microarrays on Hybrid Polymeric Thin Film-Coated Slides for Multiple-Protein Immunoassays Methods of Molecular Biology. 382: 259-271. PMID 18220237 DOI: 10.1007/978-1-59745-304-2_17  0.68
2007 Yergeau E, Kang S, He Z, Zhou J, Kowalchuk GA. Functional microarray analysis of nitrogen and carbon cycling genes across an Antarctic latitudinal transect. The Isme Journal. 1: 163-179. PMID 18043626 DOI: 10.1038/Ismej.2007.24  0.8
2007 Leigh MB, Pellizari VH, Uhlík O, Sutka R, Rodrigues J, Ostrom NE, Zhou J, Tiedje JM. Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs) Isme Journal. 1: 134-148. PMID 18043623 DOI: 10.1038/Ismej.2007.26  0.76
2007 He Z, Gentry TJ, Schadt CW, Wu L, Liebich J, Chong SC, Huang Z, Wu W, Gu B, Jardine P, Criddle C, Zhou J. GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. The Isme Journal. 1: 67-77. PMID 18043615 DOI: 10.1038/Ismej.2007.2  0.76
2007 Stolyar S, He Q, Joachimiak MP, He Z, Yang ZK, Borglin SE, Joyner DC, Huang K, Alm E, Hazen TC, Zhou J, Wall JD, Arkin AP, Stahl DA. Response of Desulfovibrio vulgaris to alkaline stress. Journal of Bacteriology. 189: 8944-52. PMID 17921288 DOI: 10.1128/Jb.00284-07  0.76
2007 Wu WM, Carley J, Luo J, Ginder-Vogel MA, Cardenas E, Leigh MB, Hwang C, Kelly SD, Ruan C, Wu L, Van Nostrand J, Gentry T, Lowe K, Mehlhorn T, Carroll S, ... ... Zhou J, et al. In situ bioreduction of uranium (VI) to submicromolar levels and reoxidation by dissolved oxygen. Environmental Science & Technology. 41: 5716-23. PMID 17874778 DOI: 10.1021/Es062657B  0.76
2007 Luo W, Wu WM, Yan T, Criddle CS, Jardine PM, Zhou J, Gu B. Influence of bicarbonate, sulfate, and electron donors on biological reduction of uranium and microbial community composition. Applied Microbiology and Biotechnology. 77: 713-21. PMID 17874092 DOI: 10.1007/S00253-007-1183-6  0.76
2007 Amos BK, Sung Y, Fletcher KE, Gentry TJ, Wu WM, Criddle CS, Zhou J, Löffler FE. Detection and quantification of Geobacter lovleyi strain SZ: implications for bioremediation at tetrachloroethene- and uranium-impacted sites. Applied and Environmental Microbiology. 73: 6898-904. PMID 17827319 DOI: 10.1128/Aem.01218-07  0.68
2007 Luo F, Yang Y, Zhong J, Gao H, Khan L, Thompson DK, Zhou J. Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory. Bmc Bioinformatics. 8: 299. PMID 17697349 DOI: 10.1186/1471-2105-8-299  0.76
2007 Bretschger O, Obraztsova A, Sturm CA, Chang IS, Gorby YA, Reed SB, Culley DE, Reardon CL, Barua S, Romine MF, Zhou J, Beliaev AS, Bouhenni R, Saffarini D, Mansfeld F, et al. Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants. Applied and Environmental Microbiology. 73: 7003-12. PMID 17644630 DOI: 10.1128/Aem.01087-07  0.76
2007 Bender KS, Yen HC, Hemme CL, Yang Z, He Z, He Q, Zhou J, Huang KH, Alm EJ, Hazen TC, Arkin AP, Wall JD. Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough. Applied and Environmental Microbiology. 73: 5389-400. PMID 17630305 DOI: 10.1128/Aem.00276-07  0.76
2007 Caffrey SM, Park HS, Voordouw JK, He Z, Zhou J, Voordouw G. Function of periplasmic hydrogenases in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Journal of Bacteriology. 189: 6159-67. PMID 17601789 DOI: 10.1128/Jb.00747-07  0.76
2007 Butler JE, He Q, Nevin KP, He Z, Zhou J, Lovley DR. Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site. Bmc Genomics. 8: 180. PMID 17578578 DOI: 10.1186/1471-2164-8-180  0.8
2007 Mukhopadhyay A, Redding AM, Joachimiak MP, Arkin AP, Borglin SE, Dehal PS, Chakraborty R, Geller JT, Hazen TC, He Q, Joyner DC, Martin VJ, Wall JD, Yang ZK, Zhou J, et al. Cell-wide responses to low-oxygen exposure in Desulfovibrio vulgaris Hildenborough. Journal of Bacteriology. 189: 5996-6010. PMID 17545284 DOI: 10.1128/Jb.00368-07  0.76
2007 Yin H, Cao L, Qiu G, Wang D, Kellogg L, Zhou J, Dai Z, Liu X. Development and evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in Acid Mine Drainages and bioleaching systems Journal of Microbiological Methods. 70: 165-178. PMID 17543401 DOI: 10.1016/J.Mimet.2007.04.011  0.76
2007 Zhang Y, Zhang X, Liu X, Xiao Y, Qu L, Wu L, Zhou J. Microarray-based analysis of changes in diversity of microbial genes involved in organic carbon decomposition following land use/cover changes. Fems Microbiology Letters. 266: 144-151. PMID 17233724 DOI: 10.1111/J.1574-6968.2006.00511.X  0.84
2007 Gao H, Yang ZK, Gentry TJ, Wu L, Schadt CW, Zhou J. Microarray-based analysis of microbial community RNAs by whole-community RNA amplification. Applied and Environmental Microbiology. 73: 563-71. PMID 17098911 DOI: 10.1128/Aem.01771-06  0.76
2007 Luo F, Yang Y, Chen CF, Chang R, Zhou J, Scheuermann RH. Modular organization of protein interaction networks. Bioinformatics (Oxford, England). 23: 207-14. PMID 17092991 DOI: 10.1093/Bioinformatics/Btl562  0.84
2007 Huang Z, Hedlund BP, Wiegel J, Zhou J, Zhang CL. Molecular phylogeny of uncultivated crenarchaeota in great basin hot springs of moderately elevated temperature Geomicrobiology Journal. 24: 535-542. DOI: 10.1080/01490450701572523  0.76
2007 Garten CT, Kang S, Brice DJ, Schadt CW, Zhou J. Variability in soil properties at different spatial scales (1 m-1 km) in a deciduous forest ecosystem Soil Biology and Biochemistry. 39: 2621-2627. DOI: 10.1016/J.Soilbio.2007.04.033  0.76
2006 Walker CB, Stolyar SS, Pinel N, Yen HC, He Z, Zhou J, Wall JD, Stahl DA. Recovery of temperate Desulfovibrio vulgaris bacteriophage using a novel host strain. Environmental Microbiology. 8: 1950-9. PMID 17014494 DOI: 10.1111/J.1462-2920.2006.01075.X  0.76
2006 Rodríguez-Martínez EM, Pérez EX, Schadt CW, Zhou J, Massol-Deyá AA. Microbial diversity and bioremediation of a hydrocarbon-contaminated aquifer (Vega Baja, Puerto Rico). International Journal of Environmental Research and Public Health. 3: 292-300. PMID 16968977 DOI: 10.3390/Ijerph2006030036  0.76
2006 Chourey K, Thompson MR, Morrell-Falvey J, Verberkmoes NC, Brown SD, Shah M, Zhou J, Doktycz M, Hettich RL, Thompson DK. Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1. Applied and Environmental Microbiology. 72: 6331-44. PMID 16957260 DOI: 10.1128/Aem.00813-06  0.76
2006 Gao H, Obraztova A, Stewart N, Popa R, Fredrickson JK, Tiedje JM, Nealson KH, Zhou J. Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean. International Journal of Systematic and Evolutionary Microbiology. 56: 1911-6. PMID 16902030 DOI: 10.1099/Ijs.0.64354-0  0.76
2006 Gentry TJ, Wickham GS, Schadt CW, He Z, Zhou J. Microarray applications in microbial ecology research. Microbial Ecology. 52: 159-75. PMID 16897303 DOI: 10.1007/S00248-006-9072-6  0.68
2006 Clark ME, He Q, He Z, Huang KH, Alm EJ, Wan XF, Hazen TC, Arkin AP, Wall JD, Zhou JZ, Fields MW. Temporal transcriptomic analysis as Desulfovibrio vulgaris Hildenborough transitions into stationary phase during electron donor depletion. Applied and Environmental Microbiology. 72: 5578-88. PMID 16885312 DOI: 10.1128/Aem.00284-06  0.68
2006 Gentile M, Yan T, Tiquia SM, Fields MW, Nyman J, Zhou J, Criddle CS. Stability in a denitrifying fluidized bed reactor. Microbial Ecology. 52: 311-21. PMID 16874554 DOI: 10.1007/S00248-006-9024-1  0.68
2006 Yan T, Ye Q, Zhou J, Zhang CL. Diversity of functional genes for methanotrophs in sediments associated with gas hydrates and hydrocarbon seeps in the Gulf of Mexico. Fems Microbiology Ecology. 57: 251-9. PMID 16867143 DOI: 10.1111/J.1574-6941.2006.00122.X  0.48
2006 Wu WM, Carley J, Gentry T, Ginder-Vogel MA, Fienen M, Mehlhorn T, Yan H, Caroll S, Pace MN, Nyman J, Luo J, Gentile ME, Fields MW, Hickey RF, Gu B, ... ... Zhou J, et al. Pilot-scale in situ bioremedation of uranium in a highly contaminated aquifer. 2. Reduction of u(VI) and geochemical control of u(VI) bioavailability. Environmental Science & Technology. 40: 3986-95. PMID 16830572 DOI: 10.1021/Es051960U  0.76
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