Jennifer Pett-Ridge - Publications

2005 University of California, Berkeley, Berkeley, CA 

103 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Neurath RA, Pett-Ridge J, Chu-Jacoby I, Herman D, Whitman T, Nico PS, Lipton AS, Kyle J, Tfaily MM, Thompson A, Firestone MK. Root Carbon Interaction with Soil Minerals Is Dynamic, Leaving a Legacy of Microbially Derived Residues. Environmental Science & Technology. PMID 34558892 DOI: 10.1021/acs.est.1c00300  1
2021 Starr EP, Shi S, Blazewicz SJ, Koch BJ, Probst AJ, Hungate BA, Pett-Ridge J, Firestone MK, Banfield JF. Stable-Isotope-Informed, Genome-Resolved Metagenomics Uncovers Potential Cross-Kingdom Interactions in Rhizosphere Soil. Msphere. e0008521. PMID 34468166 DOI: 10.1128/mSphere.00085-21  1
2021 Waring BG, Sulman BN, Reed S, Smith AP, Averill C, Creamer CA, Cusack DF, Hall SJ, Jastrow JD, Jilling A, Kemner KM, Kleber M, Liu XA, Pett-Ridge J, Schulz M. Response to 'Connectivity and pore accessibility in models of soil carbon cycling'. Global Change Biology. PMID 34407279 DOI: 10.1111/gcb.15850  1
2021 Bates CT, Escalas A, Kuang J, Hale L, Wang Y, Herman D, Nuccio EE, Wan X, Bhattacharyya A, Fu Y, Tian R, Wang G, Ning D, Yang Y, Wu L, ... Pett-Ridge J, et al. Conversion of marginal land into switchgrass conditionally accrues soil carbon but reduces methane consumption. The Isme Journal. PMID 34211103 DOI: 10.1038/s41396-021-00916-y  1
2021 Stone BW, Li J, Koch BJ, Blazewicz SJ, Dijkstra P, Hayer M, Hofmockel KS, Liu XA, Mau RL, Morrissey EM, Pett-Ridge J, Schwartz E, Hungate BA. Author Correction: Nutrients cause consolidation of soil carbon flux to small proportion of bacterial community. Nature Communications. 12: 4052. PMID 34168161 DOI: 10.1038/s41467-021-24314-2  1
2021 Stone BW, Li J, Koch BJ, Blazewicz SJ, Dijkstra P, Hayer M, Hofmockel KS, Liu XA, Mau RL, Morrissey EM, Pett-Ridge J, Schwartz E, Hungate BA. Nutrients cause consolidation of soil carbon flux to small proportion of bacterial community. Nature Communications. 12: 3381. PMID 34099669 DOI: 10.1038/s41467-021-23676-x  1
2021 Hestrin R, Weber PK, Pett-Ridge J, Lehmann J. Plants and mycorrhizal symbionts acquire substantial soil nitrogen from gaseous ammonia transport. The New Phytologist. PMID 34077566 DOI: 10.1111/nph.17527  1
2021 Ceja-Navarro JA, Wang Y, Ning D, Arellano A, Ramanculova L, Yuan MM, Byer A, Craven KD, Saha MC, Brodie EL, Pett-Ridge J, Firestone MK. Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop. Microbiome. 9: 96. PMID 33910643 DOI: 10.1186/s40168-021-01042-9  1
2021 Hungate BA, Marks JC, Power ME, Schwartz E, van Groenigen KJ, Blazewicz SJ, Chuckran P, Dijkstra P, Finley BK, Firestone MK, Foley M, Greenlon A, Hayer M, Hofmockel KS, Koch BJ, ... ... Pett-Ridge J, et al. The Functional Significance of Bacterial Predators. Mbio. 12. PMID 33906922 DOI: 10.1128/mBio.00466-21  1
2021 Yuan MM, Kakouridis A, Starr E, Nguyen N, Shi S, Pett-Ridge J, Nuccio E, Zhou J, Firestone M. Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches. Mbio. 12. PMID 33879589 DOI: 10.1128/mBio.03509-20  1
2021 Zablocki O, Michelsen M, Burris M, Solonenko N, Warwick-Dugdale J, Ghosh R, Pett-Ridge J, Sullivan MB, Temperton B. VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in nature. Peerj. 9: e11088. PMID 33850654 DOI: 10.7717/peerj.11088  0.01
2021 Wang C, Morrissey EM, Mau RL, Hayer M, Piñeiro J, Mack MC, Marks JC, Bell SL, Miller SN, Schwartz E, Dijkstra P, Koch BJ, Stone BW, Purcell AM, Blazewicz SJ, ... ... Pett-Ridge J, et al. The temperature sensitivity of soil: microbial biodiversity, growth, and carbon mineralization. The Isme Journal. PMID 33782569 DOI: 10.1038/s41396-021-00959-1  1
2021 Waring BG, Sulman BN, Reed S, Smith AP, Averill C, Creamer CA, Cusack DF, Hall SJ, Jastrow JD, Jilling A, Kemner KM, Kleber M, Liu XA, Pett-Ridge J, Schulz M. Response to 'Stochastic and deterministic interpretation of pool models'. Global Change Biology. PMID 33660887 DOI: 10.1111/gcb.15580  1
2020 Aigle A, Gubry-Rangin C, Thion C, Estera-Molina K, Richmond H, Pett-Ridge J, Firestone MK, Nicol G, Prosser J. Experimental testing of hypotheses for temperature- and pH-based niche specialisation of ammonia oxidising archaea and bacteria. Environmental Microbiology. PMID 32783333 DOI: 10.1111/1462-2920.15192  1
2020 Sieradzki ET, Koch BJ, Greenlon A, Sachdeva R, Malmstrom RR, Mau RL, Blazewicz SJ, Firestone MK, Hofmockel KS, Schwartz E, Hungate BA, Pett-Ridge J. Measurement Error and Resolution in Quantitative Stable Isotope Probing: Implications for Experimental Design. Msystems. 5. PMID 32694124 DOI: 10.1128/mSystems.00151-20  1
2020 Blazewicz SJ, Hungate BA, Koch BJ, Nuccio EE, Morrissey E, Brodie EL, Schwartz E, Pett-Ridge J, Firestone MK. Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil. The Isme Journal. PMID 32203117 DOI: 10.1038/S41396-020-0617-3  1
2020 Nuccio EE, Starr E, Karaoz U, Brodie EL, Zhou J, Tringe SG, Malmstrom RR, Woyke T, Banfield JF, Firestone MK, Pett-Ridge J. Niche differentiation is spatially and temporally regulated in the rhizosphere. The Isme Journal. PMID 31953507 DOI: 10.1038/S41396-019-0582-X  1
2020 Lin Y, Campbell AN, Bhattacharyya A, DiDonato N, Thompson AM, Tfaily MM, Nico PS, Silver WL, Pett-Ridge J. Differential effects of redox conditions on the decomposition of litter and soil organic matter Biogeosciences Discussions. 1-25. DOI: 10.5194/Bg-2020-59  1
2020 Dove NC, Arogyaswamy K, Billings SA, Botthoff JK, Carey CJ, Cisco C, DeForest JL, Fairbanks D, Fierer N, Gallery RE, Kaye JP, Lohse KA, Maltz MR, Mayorga E, Pett-Ridge J, et al. Continental-scale patterns of extracellular enzyme activity in the subsoil: an overlooked reservoir of microbial activity Environmental Research Letters. DOI: 10.1088/1748-9326/Abb0B3  1
2020 Sher Y, Baker NR, Herman D, Fossum C, Hale L, Zhang X, Nuccio E, Saha M, Zhou J, Pett-Ridge J, Firestone M. Corrigendum to “Microbial extracellular polysaccharide production and aggregate stability controlled by Switchgrass (Panicum virgatum) root biomass and soil water potential” [Soil Biology and Biochemistry 143 (2020) 107741] Soil Biology & Biochemistry. 148: 107907. DOI: 10.1016/J.Soilbio.2020.107907  1
2019 Dekas AE, Parada AE, Mayali X, Fuhrman JA, Wollard J, Weber PK, Pett-Ridge J. Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP. Frontiers in Microbiology. 10: 2682. PMID 31920997 DOI: 10.3389/Fmicb.2019.02682  1
2019 Sevim V, Lee J, Egan R, Clum A, Hundley H, Lee J, Everroad RC, Detweiler AM, Bebout BM, Pett-Ridge J, Göker M, Murray AE, Lindemann SR, Klenk HP, O'Malley R, et al. Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies. Scientific Data. 6: 285. PMID 31772173 DOI: 10.1038/S41597-019-0287-Z  1
2019 Starr EP, Nuccio EE, Pett-Ridge J, Banfield JF, Firestone MK. Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil. Proceedings of the National Academy of Sciences of the United States of America. PMID 31772013 DOI: 10.1073/Pnas.1908291116  1
2019 Gross A, Lin Y, Weber PK, Pett-Ridge J, Silver WL. The role of soil redox conditions in microbial phosphorus cycling in humid tropical forests. Ecology. PMID 31715005 DOI: 10.1002/Ecy.2928  1
2019 Brewer TE, Aronson EL, Arogyaswamy K, Billings SA, Botthoff JK, Campbell AN, Dove NC, Fairbanks D, Gallery RE, Hart SC, Kaye J, King G, Logan G, Lohse KA, Maltz MR, ... ... Pett-Ridge J, et al. Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons. Mbio. 10. PMID 31575762 DOI: 10.1128/Mbio.01318-19  1
2019 Tsednee M, Castruita M, Salomé PA, Sharma A, Lewis BE, Schmollinger SR, Strenkert D, Holbrook K, Otegui MS, Khatua K, Das S, Datta A, Chen S, Ramon C, Ralle M, ... ... Pett-Ridge J, et al. Manganese co-localizes with calcium and phosphorus in Chlamydomonas acidocalcisomes and is mobilized in Mn-deficient conditions. The Journal of Biological Chemistry. PMID 31527081 DOI: 10.1074/Jbc.Ra119.009130  1
2019 Mayali X, Weber PK, Nuccio E, Lietard J, Somoza M, Blazewicz SJ, Pett-Ridge J. Chip-SIP: Stable Isotope Probing Analyzed with rRNA-Targeted Microarrays and NanoSIMS. Methods in Molecular Biology (Clifton, N.J.). 2046: 71-87. PMID 31407297 DOI: 10.1007/978-1-4939-9721-3_6  1
2019 Zengler K, Hofmockel K, Baliga NS, Behie SW, Bernstein HC, Brown JB, Dinneny JR, Floge SA, Forry SP, Hess M, Jackson SA, Jansson C, Lindemann SR, Pett-Ridge J, Maranas C, et al. EcoFABs: advancing microbiome science through standardized fabricated ecosystems. Nature Methods. PMID 31227812 DOI: 10.1038/S41592-019-0465-0  0.04
2019 Morrissey EM, Mau RL, Hayer M, Liu XA, Schwartz E, Dijkstra P, Koch BJ, Allen K, Blazewicz SJ, Hofmockel K, Pett-Ridge J, Hungate BA. Evolutionary history constrains microbial traits across environmental variation. Nature Ecology & Evolution. PMID 31209289 DOI: 10.1038/S41559-019-0918-Y  1
2019 Navid A, Jiao Y, Wong SE, Pett-Ridge J. System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris. Bmc Bioinformatics. 20: 233. PMID 31072303 DOI: 10.1186/S12859-019-2844-Z  1
2019 Li J, Mau RL, Dijkstra P, Koch BJ, Schwartz E, Liu XA, Morrissey EM, Blazewicz SJ, Pett-Ridge J, Stone BW, Hayer M, Hungate BA. Predictive genomic traits for bacterial growth in culture versus actual growth in soil. The Isme Journal. PMID 31053828 DOI: 10.1038/S41396-019-0422-Z  1
2019 Ceja-Navarro JA, Karaoz U, Bill M, Hao Z, White RA, Arellano A, Ramanculova L, Filley TR, Berry TD, Conrad ME, Blackwell M, Nicora CD, Kim YM, Reardon PN, Lipton MS, ... ... Pett-Ridge J, et al. Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle. Nature Microbiology. PMID 30858574 DOI: 10.1038/S41564-019-0384-Y  1
2018 Bhattacharyya A, Campbell AN, Tfaily MM, Lin Y, Kukkadapu RK, Silver W, Nico PS, Pett-Ridge J. Redox fluctuations control the coupled cycling of iron and carbon in tropical forest soils. Environmental Science & Technology. PMID 30451506 DOI: 10.1021/Acs.Est.8B03408  1
2018 Lee JZ, Everroad RC, Karaoz U, Detweiler AM, Pett-Ridge J, Weber PK, Prufert-Bebout L, Bebout BM. Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat. Plos One. 13: e0202792. PMID 30204767 DOI: 10.1371/Journal.Pone.0202792  1
2018 Whitman T, Neurath R, Perera A, Chu-Jacoby I, Ning D, Zhou J, Nico P, Pett-Ridge J, Firestone M. Microbial community assembly differs across minerals in a rhizosphere microcosm. Environmental Microbiology. PMID 30047192 DOI: 10.1111/1462-2920.14366  1
2018 Samo TJ, Kimbrel JA, Nilson DJ, Pett-Ridge J, Weber PK, Mayali X. Attachment between heterotrophic bacteria and microalgae influences symbiotic microscale interactions. Environmental Microbiology. PMID 30022580 DOI: 10.1111/1462-2920.14357  1
2018 Ackerman CM, Weber PK, Xiao T, Thai B, Kuo TJ, Zhang E, Pett-Ridge J, Chang CJ. Multimodal LA-ICP-MS and nanoSIMS imaging enables copper mapping within photoreceptor megamitochondria in a zebrafish model of Menkes disease. Metallomics : Integrated Biometal Science. PMID 29507920 DOI: 10.1039/C7Mt00349H  1
2017 Stuart RK, Mayali X, Thelen MP, Pett-Ridge J, Weber PK. Measuring Cyanobacterial Metabolism in Biofilms with NanoSIMS Isotope Imaging and Scanning Electron Microscopy (SEM). Bio-Protocol. 7: e2263. PMID 34541249 DOI: 10.21769/BioProtoc.2263  1
2017 D'haeseleer P, Lee JZ, Prufert-Bebout L, Burow LC, Detweiler AM, Weber PK, Karaoz U, Brodie EL, Glavina Del Rio T, Tringe SG, Bebout BM, Pett-Ridge J. Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate. Standards in Genomic Sciences. 12: 67. PMID 29167704 DOI: 10.1186/S40793-017-0279-6  1
2017 Bryson S, Li Z, Chavez F, Weber PK, Pett-Ridge J, Hettich RL, Pan C, Mayali X, Mueller RS. Phylogenetically conserved resource partitioning in the coastal microbial loop. The Isme Journal. PMID 28800138 DOI: 10.1038/Ismej.2017.128  1
2017 Warren MJ, Lin X, Gaby JC, Kretz CB, Kolton M, Morton PL, Pett-Ridge J, Weston DJ, Schadt CW, Kostka JE, Glass JB. Molybdenum-based diazotrophy in a Sphagnum peatland in northern Minnesota. Applied and Environmental Microbiology. PMID 28667112 DOI: 10.1128/Aem.01174-17  0.01
2016 Bryson S, Li Z, Pett-Ridge J, Hettich RL, Mayali X, Pan C, Mueller RS. Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton. Msystems. 1. PMID 27822523 DOI: 10.1128/mSystems.00027-15  1
2016 Everroad RC, Stuart RK, Bebout BM, Detweiler AM, Lee JZ, Woebken D, Prufert-Bebout L, Pett-Ridge J. Permanent draft genome of strain ESFC-1: ecological genomics of a newly discovered lineage of filamentous diazotrophic cyanobacteria. Standards in Genomic Sciences. 11: 53. PMID 27559430 DOI: 10.1186/S40793-016-0174-6  1
2016 Musat N, Musat F, Weber PK, Pett-Ridge J. Tracking microbial interactions with NanoSIMS. Current Opinion in Biotechnology. 41: 114-121. PMID 27419912 DOI: 10.1016/J.Copbio.2016.06.007  1
2016 Stuart RK, Mayali X, Boaro AA, Zemla A, Everroad RC, Nilson D, Weber PK, Lipton M, Bebout BM, Pett-Ridge J, Thelen MP. Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm. Mbio. 7. PMID 27353754 DOI: 10.1128/Mbio.00650-16  1
2016 Nuccio EE, Anderson-Furgeson J, Estera KY, Pett-Ridge J, De Valpine P, Brodie EL, Firestone MK. Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass. Ecology. 97: 1307-18. PMID 27349106  1
2016 Moyes AB, Kueppers LM, Pett-Ridge J, Carper DL, Vandehey N, O'Neil J, Frank AC. Evidence for foliar endophytic nitrogen fixation in a widely distributed subalpine conifer. The New Phytologist. 210: 657-668. PMID 27000956 DOI: 10.1111/Nph.13850  1
2016 Eloe-Fadrosh EA, Paez-Espino D, Jarett J, Dunfield PF, Hedlund BP, Dekas AE, Grasby SE, Brady AL, Dong H, Briggs BR, Li WJ, Goudeau D, Malmstrom R, Pati A, Pett-Ridge J, et al. Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nature Communications. 7: 10476. PMID 26814032 DOI: 10.1038/Ncomms10476  1
2016 Moyes AB, Kueppers LM, Pett-Ridge J, Carper DL, Vandehey N, O'Neil J, Frank AC. Evidence for foliar endophytic nitrogen fixation in a widely distributed subalpine conifer New Phytologist. DOI: 10.1111/nph.13850  1
2015 Stuart RK, Mayali X, Lee JZ, Craig Everroad R, Hwang M, Bebout BM, Weber PK, Pett-Ridge J, Thelen MP. Cyanobacterial reuse of extracellular organic carbon in microbial mats. The Isme Journal. PMID 26495994 DOI: 10.1038/Ismej.2015.180  1
2015 Keiluweit M, Nico P, Harmon ME, Mao J, Pett-Ridge J, Kleber M. Long-term litter decomposition controlled by manganese redox cycling. Proceedings of the National Academy of Sciences of the United States of America. 112: E5253-60. PMID 26372954 DOI: 10.1073/Pnas.1508945112  1
2015 Shi S, Nuccio E, Herman DJ, Rijkers R, Estera K, Li J, da Rocha UN, He Z, Pett-Ridge J, Brodie EL, Zhou J, Firestone M. Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons. Mbio. 6. PMID 26242625 DOI: 10.1128/Mbio.00746-15  1
2015 Mueller RS, Bryson S, Kieft B, Li Z, Pett-Ridge J, Chavez F, Hettich RL, Pan C, Mayali X. Metagenome sequencing of a coastal marine microbial community from monterey bay, california. Genome Announcements. 3. PMID 25931598 DOI: 10.1128/Genomea.00341-15  1
2015 Hong-Hermesdorf A, Miethke M, Gallaher SD, Kropat J, Dodani SC, Chan J, Barupala D, Domaille DW, Shirasaki DI, Loo JA, Weber PK, Pett-Ridge J, Stemmler TL, Chang CJ, Merchant SS. Subcellular metal imaging identifies dynamic sites of Cu accumulation in Chlamydomonas. Nature Chemical Biology. 11: 235. PMID 25689337 DOI: 10.1038/Nchembio0315-235C  1
2015 Woebken D, Burow LC, Behnam F, Mayali X, Schintlmeister A, Fleming ED, Prufert-Bebout L, Singer SW, Cortés AL, Hoehler TM, Pett-Ridge J, Spormann AM, Wagner M, Weber PK, Bebout BM. Revisiting N₂ fixation in Guerrero Negro intertidal microbial mats with a functional single-cell approach. The Isme Journal. 9: 485-96. PMID 25303712 DOI: 10.1038/Ismej.2014.144  1
2015 Marks JA, Pett-Ridge JC, Perakis SS, Allen JL, McCune B. Response of the nitrogen-fixing lichen Lobaria pulmonaria to phosphorus, molybdenum, and vanadium Ecosphere. 6. DOI: 10.1890/Es15-00140.1  1
2015 Keiluweit M, Bougoure JJ, Nico PS, Pett-Ridge J, Weber PK, Kleber M. Mineral protection of soil carbon counteracted by root exudates Nature Climate Change. 5: 588-595. DOI: 10.1038/Nclimate2580  1
2015 Porder S, Johnson AH, Xing HX, Brocard G, Goldsmith S, Pett-Ridge J. Linking geomorphology, weathering and cation availability in the Luquillo Mountains of Puerto Rico Geoderma. 249: 100-110. DOI: 10.1016/J.Geoderma.2015.03.002  1
2015 Siebert C, Pett-Ridge JC, Opfergelt S, Guicharnaud RA, Halliday AN, Burton KW. Molybdenum isotope fractionation in soils: Influence of redox conditions, organic matter, and atmospheric inputs Geochimica Et Cosmochimica Acta. 162: 1-24. DOI: 10.1016/J.Gca.2015.04.007  1
2015 King EK, Thompson A, Chadwick OA, Pett-Ridge JC. Molybdenum sources and isotopic composition during early stages of pedogenesis along a basaltic climate transect Chemical Geology. DOI: 10.1016/J.Chemgeo.2016.01.024  1
2015 McClintock MA, Brocard G, Willenbring J, Tamayo C, Porder S, Pett-Ridge JC. Spatial variability of African dust in soils in a montane tropical landscape in Puerto Rico Chemical Geology. 412: 69-81. DOI: 10.1016/J.Chemgeo.2015.06.032  1
2015 Marks JA, Perakis SS, King EK, Pett-Ridge J. Soil organic matter regulates molybdenum storage and mobility in forests Biogeochemistry. DOI: 10.1007/S10533-015-0121-4  1
2014 Hong-Hermesdorf A, Miethke M, Gallaher SD, Kropat J, Dodani SC, Chan J, Barupala D, Domaille DW, Shirasaki DI, Loo JA, Weber PK, Pett-Ridge J, Stemmler TL, Chang CJ, Merchant SS. Subcellular metal imaging identifies dynamic sites of Cu accumulation in Chlamydomonas. Nature Chemical Biology. 10: 1034-42. PMID 25344811 DOI: 10.1038/Nchembio.1662  1
2014 Mayali X, Weber PK, Mabery S, Pett-Ridge J. Phylogenetic patterns in the microbial response to resource availability: amino acid incorporation in San Francisco Bay. Plos One. 9: e95842. PMID 24752604 DOI: 10.1371/Journal.Pone.0095842  1
2014 Burow LC, Woebken D, Marshall IP, Singer SW, Pett-Ridge J, Prufert-Bebout L, Spormann AM, Bebout BM, Weber PK, Hoehler TM. Identification of Desulfobacterales as primary hydrogenotrophs in a complex microbial mat community. Geobiology. 12: 221-30. PMID 24730641 DOI: 10.1111/Gbi.12080  1
2014 Lee JZ, Burow LC, Woebken D, Everroad RC, Kubo MD, Spormann AM, Weber PK, Pett-Ridge J, Bebout BM, Hoehler TM. Fermentation couples Chloroflexi and sulfate-reducing bacteria to Cyanobacteria in hypersaline microbial mats. Frontiers in Microbiology. 5: 61. PMID 24616716 DOI: 10.3389/Fmicb.2014.00061  1
2014 Ceja-Navarro JA, Nguyen NH, Karaoz U, Gross SR, Herman DJ, Andersen GL, Bruns TD, Pett-Ridge J, Blackwell M, Brodie EL. Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus. The Isme Journal. 8: 6-18. PMID 23985746 DOI: 10.1038/Ismej.2013.134  1
2013 Carpenter KJ, Weber PK, Davisson ML, Pett-Ridge J, Haverty MI, Keeling PJ. Correlated SEM, FIB-SEM, TEM, and NanoSIMS imaging of microbes from the hindgut of a lower termite: methods for in situ functional and ecological studies of uncultivable microbes. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 19: 1490-501. PMID 24119340 DOI: 10.1017/S1431927613013482  1
2013 Everroad RC, Woebken D, Singer SW, Burow LC, Kyrpides N, Woyke T, Goodwin L, Detweiler A, Prufert-Bebout L, Pett-Ridge J. Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1. Genome Announcements. 1. PMID 23908279 DOI: 10.1128/Genomea.00527-13  1
2013 Pett-Ridge J, Petersen DG, Nuccio E, Firestone MK. Influence of oxic/anoxic fluctuations on ammonia oxidizers and nitrification potential in a wet tropical soil. Fems Microbiology Ecology. 85: 179-94. PMID 23556538 DOI: 10.1111/1574-6941.12111  1
2013 Nuccio EE, Hodge A, Pett-Ridge J, Herman DJ, Weber PK, Firestone MK. An arbuscular mycorrhizal fungus significantly modifies the soil bacterial community and nitrogen cycling during litter decomposition. Environmental Microbiology. 15: 1870-81. PMID 23360621 DOI: 10.1111/1462-2920.12081  1
2013 Burow LC, Woebken D, Marshall IP, Lindquist EA, Bebout BM, Prufert-Bebout L, Hoehler TM, Tringe SG, Pett-Ridge J, Weber PK, Spormann AM, Singer SW. Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics. The Isme Journal. 7: 817-29. PMID 23190731 DOI: 10.1038/Ismej.2012.150  1
2013 Mayali X, Weber PK, Pett-Ridge J. Taxon-specific C/N relative use efficiency for amino acids in an estuarine community. Fems Microbiology Ecology. 83: 402-12. PMID 22994392 DOI: 10.1111/J.1574-6941.12000.X  1
2013 Keech AR, West AJ, Pett-Ridge JC, Henderson GM. Evaluating U-series tools for weathering rate and duration on a soil sequence of known ages Earth and Planetary Science Letters. 374: 24-35. DOI: 10.1016/J.Epsl.2013.04.032  1
2013 Mueller CW, Weber PK, Kilburn MR, Hoeschen C, Kleber M, Pett-Ridge J. Advances in the analysis of biogeochemical interfaces. Nanosims to investigate soil microenvironments Advances in Agronomy. 121: 1-46. DOI: 10.1016/B978-0-12-407685-3.00001-3  1
2012 Pett-Ridge J, Weber PK. NanoSIP: NanoSIMS applications for microbial biology. Methods in Molecular Biology (Clifton, N.J.). 881: 375-408. PMID 22639220 DOI: 10.1007/978-1-61779-827-6_13  1
2012 Woebken D, Burow LC, Prufert-Bebout L, Bebout BM, Hoehler TM, Pett-Ridge J, Spormann AM, Weber PK, Singer SW. Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis. The Isme Journal. 6: 1427-39. PMID 22237543 DOI: 10.1038/Ismej.2011.200  1
2012 Mayali X, Weber PK, Brodie EL, Mabery S, Hoeprich PD, Pett-Ridge J. High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use. The Isme Journal. 6: 1210-21. PMID 22158395 DOI: 10.1038/Ismej.2011.175  1
2012 Burow LC, Woebken D, Bebout BM, McMurdie PJ, Singer SW, Pett-Ridge J, Prufert-Bebout L, Spormann AM, Weber PK, Hoehler TM. Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay. The Isme Journal. 6: 863-74. PMID 22011721 DOI: 10.1038/Ismej.2011.142  1
2012 Jiao Y, Navid A, Stewart BJ, McKinlay JB, Thelen MP, Pett-Ridge J. Syntrophic metabolism of a co-culture containing Clostridium cellulolyticum and Rhodopseudomonas palustris for hydrogen production International Journal of Hydrogen Energy. 37: 11719-11726. DOI: 10.1016/J.Ijhydene.2012.05.100  1
2012 Keiluweit M, Bougoure JJ, Zeglin LH, Myrold DD, Weber PK, Pett-Ridge J, Kleber M, Nico PS. Nano-scale investigation of the association of microbial nitrogen residues with iron (hydr)oxides in a forest soil O-horizon Geochimica Et Cosmochimica Acta. 95: 213-226. DOI: 10.1016/J.Gca.2012.07.001  1
2012 Treseder KK, Balser TC, Bradford MA, Brodie EL, Dubinsky EA, Eviner VT, Hofmockel KS, Lennon JT, Levine UY, MacGregor BJ, Pett-Ridge J, Waldrop MP. Integrating microbial ecology into ecosystem models: Challenges and priorities Biogeochemistry. 109: 7-18. DOI: 10.1007/S10533-011-9636-5  1
2011 Myrold DD, Pett-Ridge J, Bottomley PJ. Nitrogen mineralization and assimilation at millimeter scales. Methods in Enzymology. 496: 91-114. PMID 21514461 DOI: 10.1016/J.Soilbio.2006.10.005  1
2011 Brantley SL, Megonigal JP, Scatena FN, Balogh-Brunstad Z, Barnes RT, Bruns MA, Van Cappellen P, Dontsova K, Hartnett HE, Hartshorn AS, Heimsath A, Herndon E, Jin L, Keller CK, Leake JR, ... ... Pett-Ridge J, et al. Twelve testable hypotheses on the geobiology of weathering. Geobiology. 9: 140-65. PMID 21231992 DOI: 10.1111/J.1472-4669.2010.00264.X  1
2011 Wolfe-Simon F, Switzer Blum J, Kulp TR, Gordon GW, Hoeft SE, Pett-Ridge J, Stolz JF, Webb SM, Weber PK, Davies PC, Anbar AD, Oremland RS. A bacterium that can grow by using arsenic instead of phosphorus. Science (New York, N.Y.). 332: 1163-6. PMID 21127214 DOI: 10.1126/Science.1197258  1
2011 Wolfe-Simon F, Blum JS, Kulp TR, Gordon GW, Hoeft SE, Pett-Ridge J, Stolz JF, Webb SM, Weber PK, Davies PCW, Anbar AD, Oremland RS. Response to comments on "A bacterium that can grow using arsenic instead of phosphorus" Science. 332: 1149j. DOI: 10.1126/Science.1202098  1
2009 Finzi-Hart JA, Pett-Ridge J, Weber PK, Popa R, Fallon SJ, Gunderson T, Hutcheon ID, Nealson KH, Capone DG. Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 106: 6345-50. PMID 19332780 DOI: 10.1073/Pnas.0810547106  1
2009 Finzi-Hart JA, Pett-Ridge J, Weber PK, Popa R, Fallon SJ, Gunderson T, Hutcheon ID, Nealson KH, Capone DG. Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry (Proceedings of the National Academy of Sciences of the United States of America (2009) 106, 15, (6345-6350) DOI: 10.1073/pnas.0810547106) Proceedings of the National Academy of Sciences of the United States of America. 106: 9931. DOI: 10.1073/pnas.0904281106  1
2009 Pett-Ridge JC, Derry LA, Kurtz AC. Sr isotopes as a tracer of weathering processes and dust inputs in a tropical granitoid watershed, Luquillo Mountains, Puerto Rico Geochimica Et Cosmochimica Acta. 73: 25-43. DOI: 10.1016/J.Gca.2008.09.032  1
2009 Pett-Ridge JC, Derry LA, Barrows JK. Ca/Sr and 87Sr/86Sr ratios as tracers of Ca and Sr cycling in the Rio Icacos watershed, Luquillo Mountains, Puerto Rico Chemical Geology. 267: 32-45. DOI: 10.1016/J.Chemgeo.2008.11.022  1
2009 Pett-Ridge JC. Contributions of dust to phosphorus cycling in tropical forests of the Luquillo Mountains, Puerto Rico Biogeochemistry. 94: 63-80. DOI: 10.1007/S10533-009-9308-X  1
2008 Templer PH, Silver WL, Pett-Ridge J, M DeAngelis K, Firestone MK. PLANT AND MICROBIAL CONTROLS ON NITROGEN RETENTION AND LOSS IN A HUMID TROPICAL FOREST. Ecology. 89: 3030-3040. PMID 31766805 DOI: 10.1890/07-1631.1  1
2008 Behrens S, Lösekann T, Pett-Ridge J, Weber PK, Ng WO, Stevenson BS, Hutcheon ID, Relman DA, Spormann AM. Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS. Applied and Environmental Microbiology. 74: 3143-50. PMID 18359832 DOI: 10.1128/Aem.00191-08  1
2008 Templer PH, Silver WL, Pett-Ridge J, DeAngelis KM, Firestone MK. Plant and microbial controls on nitrogen retention and loss in a humid tropical forest Ecology. 89: 3030-3040. DOI: 10.1890/07-1631.1  1
2007 Popa R, Weber PK, Pett-Ridge J, Finzi JA, Fallon SJ, Hutcheon ID, Nealson KH, Capone DG. Carbon and nitrogen fixation and metabolite exchange in and between individual cells of Anabaena oscillarioides. The Isme Journal. 1: 354-60. PMID 18043646 DOI: 10.1038/Ismej.2007.44  1
2007 Herrmann AM, Ritz K, Nunan N, Clode PL, Pett-Ridge J, Kilburn MR, Murphy DV, O'Donnell AG, Stockdale EA. Nano-scale secondary ion mass spectrometry - A new analytical tool in biogeochemistry and soil ecology: A review article Soil Biology and Biochemistry. 39: 1835-1850. DOI: 10.1016/J.Soilbio.2007.03.011  1
2007 Pardo LH, Hemond HF, Montoya JP, Pett-Ridge J. Natural abundance 15N in soil and litter across a nitrate-output gradient in New Hampshire Forest Ecology and Management. 251: 217-230. DOI: 10.1016/j.foreco.2007.06.047  1
2007 Pett-Ridge JC, Monastra VM, Derry LA, Chadwick OA. Importance of atmospheric inputs and Fe-oxides in controlling soil uranium budgets and behavior along a Hawaiian chronosequence Chemical Geology. 244: 691-707. DOI: 10.1016/J.Chemgeo.2007.07.016  1
2006 Derry LA, Pett-Ridge JC, Kurtz AC, Troester JW. Ge/Si and 87Sr/86Sr tracers of weathering reactions and hydrologic pathways in a tropical granitoid system Journal of Geochemical Exploration. 88: 271-274. DOI: 10.1016/J.Gexplo.2005.08.054  1
2006 Pett-Ridge J, Silver WL, Firestone MK. Redox fluctuations frame microbial community impacts on N-cycling rates in a humid tropical forest soil Biogeochemistry. 81: 95-110. DOI: 10.1007/S10533-006-9032-8  1
2005 Pett-Ridge J, Firestone MK. Redox fluctuation structures microbial communities in a wet tropical soil. Applied and Environmental Microbiology. 71: 6998-7007. PMID 16269735 DOI: 10.1128/Aem.71.11.6998-7007.2005  1
2004 Pardo LH, Kendall C, Pett-Ridge J, Chang CCY. Evaluating the source of streamwater nitrate using δ15N and δ18O in nitrate in two watersheds in New Hampshire, USA Hydrological Processes. 18: 2699-2712. DOI: 10.1002/Hyp.5576  1
2002 Pett-Ridge J, Silver WL. Survival, growth, and ecosystem dynamics of displaced bromeliads in a montane tropical forest Biotropica. 34: 211-224. DOI: 10.1646/0006-3606(2002)034[0211:Sgaedo]2.0.Co;2  1
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