Jennifer Pett-Ridge - Publications

Affiliations: 
2005 University of California, Berkeley, Berkeley, CA 

44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Ceja-Navarro JA, Karaoz U, Bill M, Hao Z, White RA, Arellano A, Ramanculova L, Filley TR, Berry TD, Conrad ME, Blackwell M, Nicora CD, Kim YM, Reardon PN, Lipton MS, ... ... Pett-Ridge J, et al. Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle. Nature Microbiology. PMID 30858574 DOI: 10.1038/s41564-019-0384-y  0.36
2018 Whitman T, Neurath R, Perera A, Chu-Jacoby I, Ning D, Zhou J, Nico P, Pett-Ridge J, Firestone M. Microbial community assembly differs across minerals in a rhizosphere microcosm. Environmental Microbiology. PMID 30047192 DOI: 10.1111/1462-2920.14366  0.32
2017 D'haeseleer P, Lee JZ, Prufert-Bebout L, Burow LC, Detweiler AM, Weber PK, Karaoz U, Brodie EL, Glavina Del Rio T, Tringe SG, Bebout BM, Pett-Ridge J. Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate. Standards in Genomic Sciences. 12: 67. PMID 29167704 DOI: 10.1186/s40793-017-0279-6  0.36
2016 Stuart RK, Mayali X, Boaro AA, Zemla A, Everroad RC, Nilson D, Weber PK, Lipton M, Bebout BM, Pett-Ridge J, Thelen MP. Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm. Mbio. 7. PMID 27353754 DOI: 10.1128/mBio.00650-16  0.6
2016 Nuccio EE, Anderson-Furgeson J, Estera KY, Pett-Ridge J, De Valpine P, Brodie EL, Firestone MK. Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass. Ecology. 97: 1307-18. PMID 27349106  0.4
2016 Eloe-Fadrosh EA, Paez-Espino D, Jarett J, Dunfield PF, Hedlund BP, Dekas AE, Grasby SE, Brady AL, Dong H, Briggs BR, Li WJ, Goudeau D, Malmstrom R, Pati A, Pett-Ridge J, et al. Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nature Communications. 7: 10476. PMID 26814032 DOI: 10.1038/ncomms10476  0.6
2016 Moyes AB, Kueppers LM, Pett-Ridge J, Carper DL, Vandehey N, O'Neil J, Frank AC. Evidence for foliar endophytic nitrogen fixation in a widely distributed subalpine conifer New Phytologist. DOI: 10.1111/nph.13850  0.6
2015 Stuart RK, Mayali X, Lee JZ, Craig Everroad R, Hwang M, Bebout BM, Weber PK, Pett-Ridge J, Thelen MP. Cyanobacterial reuse of extracellular organic carbon in microbial mats. The Isme Journal. PMID 26495994 DOI: 10.1038/ismej.2015.180  0.6
2015 Keiluweit M, Nico P, Harmon ME, Mao J, Pett-Ridge J, Kleber M. Long-term litter decomposition controlled by manganese redox cycling. Proceedings of the National Academy of Sciences of the United States of America. 112: E5253-60. PMID 26372954 DOI: 10.1073/pnas.1508945112  0.6
2015 Shi S, Nuccio E, Herman DJ, Rijkers R, Estera K, Li J, da Rocha UN, He Z, Pett-Ridge J, Brodie EL, Zhou J, Firestone M. Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons. Mbio. 6. PMID 26242625 DOI: 10.1128/mBio.00746-15  0.6
2015 Woebken D, Burow LC, Behnam F, Mayali X, Schintlmeister A, Fleming ED, Prufert-Bebout L, Singer SW, Cortés AL, Hoehler TM, Pett-Ridge J, Spormann AM, Wagner M, Weber PK, Bebout BM. Revisiting N₂ fixation in Guerrero Negro intertidal microbial mats with a functional single-cell approach. The Isme Journal. 9: 485-96. PMID 25303712 DOI: 10.1038/ismej.2014.144  0.6
2015 Keiluweit M, Bougoure JJ, Nico PS, Pett-Ridge J, Weber PK, Kleber M. Mineral protection of soil carbon counteracted by root exudates Nature Climate Change. 5: 588-595. DOI: 10.1038/nclimate2580  0.6
2014 Hong-Hermesdorf A, Miethke M, Gallaher SD, Kropat J, Dodani SC, Chan J, Barupala D, Domaille DW, Shirasaki DI, Loo JA, Weber PK, Pett-Ridge J, Stemmler TL, Chang CJ, Merchant SS. Subcellular metal imaging identifies dynamic sites of Cu accumulation in Chlamydomonas. Nature Chemical Biology. 10: 1034-42. PMID 25344811 DOI: 10.1038/nchembio.1662  0.6
2014 Mayali X, Weber PK, Mabery S, Pett-Ridge J. Phylogenetic patterns in the microbial response to resource availability: amino acid incorporation in San Francisco Bay. Plos One. 9: e95842. PMID 24752604 DOI: 10.1371/journal.pone.0095842  0.6
2014 Burow LC, Woebken D, Marshall IP, Singer SW, Pett-Ridge J, Prufert-Bebout L, Spormann AM, Bebout BM, Weber PK, Hoehler TM. Identification of Desulfobacterales as primary hydrogenotrophs in a complex microbial mat community. Geobiology. 12: 221-30. PMID 24730641 DOI: 10.1111/gbi.12080  0.6
2014 Lee JZ, Burow LC, Woebken D, Everroad RC, Kubo MD, Spormann AM, Weber PK, Pett-Ridge J, Bebout BM, Hoehler TM. Fermentation couples Chloroflexi and sulfate-reducing bacteria to Cyanobacteria in hypersaline microbial mats. Frontiers in Microbiology. 5: 61. PMID 24616716 DOI: 10.3389/fmicb.2014.00061  0.6
2014 Ceja-Navarro JA, Nguyen NH, Karaoz U, Gross SR, Herman DJ, Andersen GL, Bruns TD, Pett-Ridge J, Blackwell M, Brodie EL. Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus. The Isme Journal. 8: 6-18. PMID 23985746 DOI: 10.1038/ismej.2013.134  0.6
2013 Carpenter KJ, Weber PK, Davisson ML, Pett-Ridge J, Haverty MI, Keeling PJ. Correlated SEM, FIB-SEM, TEM, and NanoSIMS imaging of microbes from the hindgut of a lower termite: methods for in situ functional and ecological studies of uncultivable microbes. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 19: 1490-501. PMID 24119340 DOI: 10.1017/S1431927613013482  0.6
2013 Pett-Ridge J, Petersen DG, Nuccio E, Firestone MK. Influence of oxic/anoxic fluctuations on ammonia oxidizers and nitrification potential in a wet tropical soil. Fems Microbiology Ecology. 85: 179-94. PMID 23556538 DOI: 10.1111/1574-6941.12111  0.6
2013 Nuccio EE, Hodge A, Pett-Ridge J, Herman DJ, Weber PK, Firestone MK. An arbuscular mycorrhizal fungus significantly modifies the soil bacterial community and nitrogen cycling during litter decomposition. Environmental Microbiology. 15: 1870-81. PMID 23360621 DOI: 10.1111/1462-2920.12081  0.6
2013 Burow LC, Woebken D, Marshall IP, Lindquist EA, Bebout BM, Prufert-Bebout L, Hoehler TM, Tringe SG, Pett-Ridge J, Weber PK, Spormann AM, Singer SW. Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics. The Isme Journal. 7: 817-29. PMID 23190731 DOI: 10.1038/ismej.2012.150  0.6
2013 Mayali X, Weber PK, Pett-Ridge J. Taxon-specific C/N relative use efficiency for amino acids in an estuarine community. Fems Microbiology Ecology. 83: 402-12. PMID 22994392 DOI: 10.1111/j.1574-6941.12000.x  0.6
2013 Mueller CW, Weber PK, Kilburn MR, Hoeschen C, Kleber M, Pett-Ridge J. Advances in the analysis of biogeochemical interfaces. Nanosims to investigate soil microenvironments Advances in Agronomy. 121: 1-46. DOI: 10.1016/B978-0-12-407685-3.00001-3  0.6
2012 Pett-Ridge J, Weber PK. NanoSIP: NanoSIMS applications for microbial biology. Methods in Molecular Biology (Clifton, N.J.). 881: 375-408. PMID 22639220 DOI: 10.1007/978-1-61779-827-6_13  0.6
2012 Woebken D, Burow LC, Prufert-Bebout L, Bebout BM, Hoehler TM, Pett-Ridge J, Spormann AM, Weber PK, Singer SW. Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis. The Isme Journal. 6: 1427-39. PMID 22237543 DOI: 10.1038/ismej.2011.200  0.6
2012 Mayali X, Weber PK, Brodie EL, Mabery S, Hoeprich PD, Pett-Ridge J. High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use. The Isme Journal. 6: 1210-21. PMID 22158395 DOI: 10.1038/ismej.2011.175  0.6
2012 Burow LC, Woebken D, Bebout BM, McMurdie PJ, Singer SW, Pett-Ridge J, Prufert-Bebout L, Spormann AM, Weber PK, Hoehler TM. Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay. The Isme Journal. 6: 863-74. PMID 22011721 DOI: 10.1038/ismej.2011.142  0.6
2012 Jiao Y, Navid A, Stewart BJ, McKinlay JB, Thelen MP, Pett-Ridge J. Syntrophic metabolism of a co-culture containing Clostridium cellulolyticum and Rhodopseudomonas palustris for hydrogen production International Journal of Hydrogen Energy. 37: 11719-11726. DOI: 10.1016/j.ijhydene.2012.05.100  0.6
2012 Keiluweit M, Bougoure JJ, Zeglin LH, Myrold DD, Weber PK, Pett-Ridge J, Kleber M, Nico PS. Nano-scale investigation of the association of microbial nitrogen residues with iron (hydr)oxides in a forest soil O-horizon Geochimica Et Cosmochimica Acta. 95: 213-226. DOI: 10.1016/j.gca.2012.07.001  0.6
2012 Treseder KK, Balser TC, Bradford MA, Brodie EL, Dubinsky EA, Eviner VT, Hofmockel KS, Lennon JT, Levine UY, MacGregor BJ, Pett-Ridge J, Waldrop MP. Integrating microbial ecology into ecosystem models: Challenges and priorities Biogeochemistry. 109: 7-18. DOI: 10.1007/s10533-011-9636-5  0.6
2011 Myrold DD, Pett-Ridge J, Bottomley PJ. Nitrogen mineralization and assimilation at millimeter scales. Methods in Enzymology. 496: 91-114. PMID 21514461 DOI: 10.1016/B978-0-12-386489-5.00004-X  0.6
2011 Wolfe-Simon F, Switzer Blum J, Kulp TR, Gordon GW, Hoeft SE, Pett-Ridge J, Stolz JF, Webb SM, Weber PK, Davies PC, Anbar AD, Oremland RS. A bacterium that can grow by using arsenic instead of phosphorus. Science (New York, N.Y.). 332: 1163-6. PMID 21127214 DOI: 10.1126/science.1197258  0.6
2011 Wolfe-Simon F, Blum JS, Kulp TR, Gordon GW, Hoeft SE, Pett-Ridge J, Stolz JF, Webb SM, Weber PK, Davies PCW, Anbar AD, Oremland RS. Response to comments on "A bacterium that can grow using arsenic instead of phosphorus" Science. 332: 1149j. DOI: 10.1126/science.1202098  0.6
2009 Finzi-Hart JA, Pett-Ridge J, Weber PK, Popa R, Fallon SJ, Gunderson T, Hutcheon ID, Nealson KH, Capone DG. Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 106: 6345-50. PMID 19332780 DOI: 10.1073/pnas.0810547106  0.6
2009 Finzi-Hart JA, Pett-Ridge J, Weber PK, Popa R, Fallon SJ, Gunderson T, Hutcheon ID, Nealson KH, Capone DG. Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry (Proceedings of the National Academy of Sciences of the United States of America (2009) 106, 15, (6345-6350) DOI: 10.1073/pnas.0810547106) Proceedings of the National Academy of Sciences of the United States of America. 106: 9931. DOI: 10.1073/pnas.0904281106  0.6
2008 Behrens S, Lösekann T, Pett-Ridge J, Weber PK, Ng WO, Stevenson BS, Hutcheon ID, Relman DA, Spormann AM. Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS. Applied and Environmental Microbiology. 74: 3143-50. PMID 18359832 DOI: 10.1128/AEM.00191-08  0.6
2008 Templer PH, Silver WL, Pett-Ridge J, DeAngelis KM, Firestone MK. Plant and microbial controls on nitrogen retention and loss in a humid tropical forest Ecology. 89: 3030-3040. DOI: 10.1890/07-1631.1  0.6
2007 Popa R, Weber PK, Pett-Ridge J, Finzi JA, Fallon SJ, Hutcheon ID, Nealson KH, Capone DG. Carbon and nitrogen fixation and metabolite exchange in and between individual cells of Anabaena oscillarioides. The Isme Journal. 1: 354-60. PMID 18043646 DOI: 10.1038/ismej.2007.44  0.6
2007 Herrmann AM, Ritz K, Nunan N, Clode PL, Pett-Ridge J, Kilburn MR, Murphy DV, O'Donnell AG, Stockdale EA. Nano-scale secondary ion mass spectrometry - A new analytical tool in biogeochemistry and soil ecology: A review article Soil Biology and Biochemistry. 39: 1835-1850. DOI: 10.1016/j.soilbio.2007.03.011  0.6
2007 Pardo LH, Hemond HF, Montoya JP, Pett-Ridge J. Natural abundance 15N in soil and litter across a nitrate-output gradient in New Hampshire Forest Ecology and Management. 251: 217-230. DOI: 10.1016/j.foreco.2007.06.047  0.6
2006 Pett-Ridge J, Silver WL, Firestone MK. Redox fluctuations frame microbial community impacts on N-cycling rates in a humid tropical forest soil Biogeochemistry. 81: 95-110. DOI: 10.1007/s10533-006-9032-8  0.6
2005 Pett-Ridge J, Firestone MK. Redox fluctuation structures microbial communities in a wet tropical soil. Applied and Environmental Microbiology. 71: 6998-7007. PMID 16269735 DOI: 10.1128/AEM.71.11.6998-7007.2005  0.6
2004 Pardo LH, Kendall C, Pett-Ridge J, Chang CCY. Evaluating the source of streamwater nitrate using δ15N and δ18O in nitrate in two watersheds in New Hampshire, USA Hydrological Processes. 18: 2699-2712. DOI: 10.1002/hyp.5576  0.6
2002 Pett-Ridge J, Silver WL. Survival, growth, and ecosystem dynamics of displaced bromeliads in a montane tropical forest Biotropica. 34: 211-224.  0.6
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