Konstantinos T. Konstantinidis - Publications

2004 Michigan State University, East Lansing, MI 

150 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Qi Q, Zhao J, Tian R, Zeng Y, Xie C, Gao Q, Dai T, Wang H, He JS, Konstantinidis KT, Yang Y, Zhou J, Guo X. Microbially enhanced methane uptake under warming enlarges ecosystem carbon sink in a Tibetan alpine grassland. Global Change Biology. PMID 36191158 DOI: 10.1111/gcb.16444  0.337
2022 Whitman WB, Chuvochina M, Hedlund BP, Hugenholtz P, Konstantinidis KT, Murray AE, Palmer M, Parks DH, Probst AJ, Reysenbach AL, Rodriguez-R LM, Rossello-Mora R, Sutcliffe I, Venter SN. Development of the SeqCode: A proposed nomenclatural code for uncultivated prokaryotes with DNA sequences as type. Systematic and Applied Microbiology. 45: 126305. PMID 36049255 DOI: 10.1016/j.syapm.2022.126305  0.332
2022 Gregory AC, Gerhardt K, Zhong ZP, Bolduc B, Temperton B, Konstantinidis KT, Sullivan MB. MetaPop: a pipeline for macro- and microdiversity analyses and visualization of microbial and viral metagenome-derived populations. Microbiome. 10: 49. PMID 35287721 DOI: 10.1186/s40168-022-01231-0  0.307
2021 Lindner BG, Suttner B, Zhu KJ, Conrad RE, Rodriguez-R LM, Hatt JK, Brown J, Konstantinidis KT. Toward shotgun metagenomic approaches for microbial source tracking sewage spills based on laboratory mesocosms. Water Research. 210: 117993. PMID 34979467 DOI: 10.1016/j.watres.2021.117993  0.318
2021 Santiago LD, DeLeon-Rodriguez N, LaSanta-Pagán K, Hatt JK, Kurt Z, Massol-Deyá A, Konstantinidis KT. Microbial diversity in a military impacted lagoon (Vieques, Puerto Rico) and description of "Candidatus Biekeibacterium resiliens" gen. nov., sp. nov. comprising a new bacterial family. Systematic and Applied Microbiology. 45: 126288. PMID 34933230 DOI: 10.1016/j.syapm.2021.126288  0.33
2021 Conrad RE, Viver T, Gago JF, Hatt JK, Venter SN, Rossello-Mora R, Konstantinidis KT. Toward quantifying the adaptive role of bacterial pangenomes during environmental perturbations. The Isme Journal. PMID 34887548 DOI: 10.1038/s41396-021-01149-9  0.338
2021 Cha G, Meinhardt KA, Orellana LH, Hatt JK, Pannu MW, Stahl DA, Konstantinidis KT. The influence of alfalfa-switchgrass intercropping on microbial community structure and function. Environmental Microbiology. PMID 34554631 DOI: 10.1111/1462-2920.15785  0.315
2021 Konstantinidis KT, Viver T, Conrad RE, Venter SN, Rossello-Mora R. Solar salterns as model systems to study the units of bacterial diversity that matter for ecosystem functioning. Current Opinion in Biotechnology. 73: 151-157. PMID 34438234 DOI: 10.1016/j.copbio.2021.07.028  0.35
2021 Zhang SY, Xiao X, Chen SC, Zhu YG, Sun GX, Konstantinidis KT. High arsenic levels increase activity rather than diversity or abundance of arsenic metabolism genes in paddy soils. Applied and Environmental Microbiology. AEM0138321. PMID 34378947 DOI: 10.1128/AEM.01383-21  0.341
2021 Ramírez-Fernández L, Orellana LH, Johnston ER, Konstantinidis KT, Orlando J. Diversity of microbial communities and genes involved in nitrous oxide emissions in Antarctic soils impacted by marine animals as revealed by metagenomics and 100 metagenome-assembled genomes. The Science of the Total Environment. 788: 147693. PMID 34029816 DOI: 10.1016/j.scitotenv.2021.147693  0.401
2021 Karthikeyan S, Orellana LH, Johnston ER, Hatt JK, Löffler FE, Ayala-Del-Río HL, González G, Konstantinidis KT. Metagenomic characterization of soil microbial communities in the Luquillo experimental forest (Puerto Rico) and implications for nitrogen cycling. Applied and Environmental Microbiology. PMID 33837013 DOI: 10.1128/AEM.00546-21  0.811
2021 Ruiz-Perez CA, Bertagnolli AD, Tsementzi D, Woyke T, Stewart FJ, Konstantinidis KT. Description of Candidatus Mesopelagibacter carboxydoxydans and Candidatus Anoxipelagibacter denitrificans: Nitrate-reducing SAR11 genera that dominate mesopelagic and anoxic marine zones. Systematic and Applied Microbiology. 44: 126185. PMID 33676264 DOI: 10.1016/j.syapm.2021.126185  0.624
2021 Shan J, Sanford RA, Chee-Sanford J, Ooi SK, Löffler FE, Konstantinidis KT, Yang WH. Beyond denitrification: the role of microbial diversity in controlling nitrous oxide reduction and soil nitrous oxide emissions. Global Change Biology. PMID 33547715 DOI: 10.1111/gcb.15545  0.523
2021 Sanford RA, Lloyd KG, Konstantinidis KT, Löffler FE. Microbial Taxonomy Run Amok. Trends in Microbiology. PMID 33546975 DOI: 10.1016/j.tim.2020.12.010  0.549
2021 Meziti A, Rodriguez-R LM, Hatt JK, Peña-Gonzalez A, Levy K, Konstantinidis KT. How reliably do metagenome-assembled genomes (MAGs) represent natural populations? Insights from comparing MAGs against isolate genomes derived from the same fecal sample. Applied and Environmental Microbiology. PMID 33452027 DOI: 10.1128/AEM.02593-20  0.355
2021 Ruiz-Perez CA, Conrad RE, Konstantinidis KT. MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes. Bmc Bioinformatics. 22: 11. PMID 33407081 DOI: 10.1186/s12859-020-03940-5  0.325
2021 Seabolt MH, Konstantinidis KT, Roellig DM. Hidden Diversity within Common Protozoan Parasites Revealed by a Novel Genomotyping Scheme. Applied and Environmental Microbiology. PMID 33397705 DOI: 10.1128/AEM.02275-20  0.313
2020 Bertagnolli AD, Konstantinidis KT, Stewart FJ. Non-denitrifier nitrous oxide reductases dominate marine biomes. Environmental Microbiology Reports. 12: 681-692. PMID 33459515 DOI: 10.1111/1758-2229.12879  0.656
2020 Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, et al. Author Correction: Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 33184503 DOI: 10.1038/s41564-020-00827-2  0.7
2020 Guo X, Gao Q, Yuan M, Wang G, Zhou X, Feng J, Shi Z, Hale L, Wu L, Zhou A, Tian R, Liu F, Wu B, Chen L, Jung CG, ... ... Konstantinidis KT, et al. Gene-informed decomposition model predicts lower soil carbon loss due to persistent microbial adaptation to warming. Nature Communications. 11: 4897. PMID 32994415 DOI: 10.1038/s41467-020-18706-z  0.622
2020 Wang Z, Tsementzi D, Williams TC, Juarez DL, Blinebry SK, Garcia NS, Sienkiewicz BK, Konstantinidis KT, Johnson ZI, Hunt DE. Environmental stability impacts the differential sensitivity of marine microbiomes to increases in temperature and acidity. The Isme Journal. PMID 32887943 DOI: 10.1038/S41396-020-00748-2  0.354
2020 Karthikeyan S, Kim M, Heritier-Robbins P, Hatt JK, Spain JC, Overholt WA, Huettel MH, Kostka JE, Konstantinidis KT. Integrated omics elucidate the mechanisms driving the rapid biodegradation of Deepwater Horizon oil in intertidal sediments undergoing oxic-anoxic cycles. Environmental Science & Technology. PMID 32667785 DOI: 10.1021/Acs.Est.0C02834  0.312
2020 Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, et al. Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 32514073 DOI: 10.1038/S41564-020-0733-X  0.782
2020 Tao X, Feng J, Yang Y, Wang G, Tian R, Fan F, Ning D, Bates CT, Hale L, Yuan MM, Wu L, Gao Q, Lei J, Schuur EAG, Yu J, ... ... Konstantinidis KT, et al. Winter warming in Alaska accelerates lignin decomposition contributed by Proteobacteria. Microbiome. 8: 84. PMID 32503635 DOI: 10.1186/S40168-020-00838-5  0.775
2020 Rodriguez-R LM, Tsementzi D, Luo C, Konstantinidis KT. Iterative subtractive binning of freshwater chronoseries metagenomes identifies over 400 novel species and their ecologic preferences. Environmental Microbiology. PMID 32495495 DOI: 10.1111/1462-2920.15112  0.465
2020 Chen SC, Sun GX, Yan Y, Konstantinidis KT, Zhang SY, Deng Y, Li XM, Cui HL, Musat F, Popp D, Rosen BP, Zhu YG. The Great Oxidation Event expanded the genetic repertoire of arsenic metabolism and cycling. Proceedings of the National Academy of Sciences of the United States of America. PMID 32350143 DOI: 10.1073/Pnas.2001063117  0.311
2020 Campanaro S, Treu L, Rodriguez-R LM, Kovalovszki A, Ziels RM, Maus I, Zhu X, Kougias PG, Basile A, Luo G, Schlüter A, Konstantinidis KT, Angelidaki I. New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters. Biotechnology For Biofuels. 13: 25. PMID 32123542 DOI: 10.1186/S13068-020-01679-Y  0.458
2020 Karthikeyan S, Rodriguez-R LM, Heritier-Robbins P, Hatt JK, Huettel M, Kostka JE, Konstantinidis KT. Genome Repository of Oil Systems (GROS): an interactive and searchable database that expands the catalogued diversity of crude oil-associated microbes. Environmental Microbiology. PMID 32114693 DOI: 10.1111/1462-2920.14966  0.313
2020 Dam P, Rodriguez-R LM, Luo C, Hatt J, Tsementzi D, Konstantinidis KT, Voit EO. Model-based Comparisons of the Abundance Dynamics of Bacterial Communities in Two Lakes. Scientific Reports. 10: 2423. PMID 32051429 DOI: 10.1038/S41598-020-58769-Y  0.402
2020 Konstantinidis KT, Rosselló-Móra R, Amann R. Advantages outweigh concerns about using genome sequence as type material for prokaryotic taxonomy. Environmental Microbiology. PMID 31997493 DOI: 10.1111/1462-2920.14934  0.381
2020 Schulz F, Roux S, Paez-Espino D, Jungbluth S, Walsh D, Denef VJ, McMahon KD, Konstantinidis KT, Eloe-Fadrosh EA, Kyrpides N, Woyke T. Giant virus diversity and host interactions through global metagenomics. Nature. PMID 31968354 DOI: 10.1038/S41586-020-1957-X  0.407
2020 Feng J, Wang C, Lei J, Yang Y, Yan Q, Zhou X, Tao X, Ning D, Yuan MM, Qin Y, Shi ZJ, Guo X, He Z, Van Nostrand JD, Wu L, ... ... Konstantinidis KT, et al. Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community. Microbiome. 8: 3. PMID 31952472 DOI: 10.1186/S40168-019-0778-3  0.791
2020 Suttner BJ, Johnston ER, Orellana LH, Rodriguez-R LM, Hatt JK, Carychao D, Carter MQ, Cooley MB, Konstantinidis KT. Potential and limitations of metagenomics as a public health risk assessment tool in a study of natural creek sediments influenced by agricultural and livestock runoff. Applied and Environmental Microbiology. PMID 31924621 DOI: 10.1128/Aem.02525-19  0.4
2019 Orellana LH, Hatt JK, Iyer R, Chourey K, Hettich RL, Spain JC, Yang WH, Chee-Sanford JC, Sanford RA, Löffler FE, Konstantinidis KT. Comparing DNA, RNA and protein levels for measuring microbial dynamics in soil microcosms amended with nitrogen fertilizer. Scientific Reports. 9: 17630. PMID 31772206 DOI: 10.1038/S41598-019-53679-0  0.646
2019 Deng J, Auchtung JM, Konstantinidis KT, Brettar I, Höfle MG, Tiedje JM. Genomic Variations Underlying Speciation and Niche Specialization of . Msystems. 4. PMID 31615877 DOI: 10.1128/mSystems.00560-19  0.642
2019 de la Haba RR, López-Hermoso C, Sánchez-Porro C, Konstantinidis KT, Ventosa A. Comparative Genomics and Phylogenomic Analysis of the Genus . Frontiers in Microbiology. 10: 2104. PMID 31572321 DOI: 10.3389/Fmicb.2019.02104  0.435
2019 Beinart RA, Luo C, Konstantinidis KT, Stewart FJ, Girguis PR. The Bacterial Symbionts of Closely Related Hydrothermal Vent Snails With Distinct Geochemical Habitats Show Broad Similarity in Chemoautotrophic Gene Content. Frontiers in Microbiology. 10: 1818. PMID 31474946 DOI: 10.3389/Fmicb.2019.01818  0.754
2019 Orellana LH, Ben Francis T, Krüger K, Teeling H, Müller MC, Fuchs BM, Konstantinidis KT, Amann RI. Niche differentiation among annually recurrent coastal Marine Group II Euryarchaeota. The Isme Journal. PMID 31447484 DOI: 10.1038/S41396-019-0491-Z  0.408
2019 Viver T, Orellana LH, Díaz S, Urdiain M, Ramos-Barbero MD, González-Pastor JE, Oren A, Hatt JK, Amann R, Antón J, Konstantinidis KT, Rosselló-Móra R. Predominance of deterministic microbial community dynamics in salterns exposed to different light intensities. Environmental Microbiology. PMID 31444990 DOI: 10.1111/1462-2920.14790  0.339
2019 Hale L, Feng W, Yin H, Guo X, Zhou X, Bracho R, Pegoraro E, Penton CR, Wu L, Cole J, Konstantinidis KT, Luo Y, Tiedje JM, Schuur EAG, Zhou J. Tundra microbial community taxa and traits predict decomposition parameters of stable, old soil organic carbon. The Isme Journal. PMID 31384013 DOI: 10.1038/S41396-019-0485-X  0.799
2019 Johnston ER, Hatt JK, He Z, Wu L, Guo X, Luo Y, Schuur EAG, Tiedje JM, Zhou J, Konstantinidis KT. Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths. Proceedings of the National Academy of Sciences of the United States of America. PMID 31285347 DOI: 10.1073/Pnas.1901307116  0.653
2019 Ruiz-Perez CA, Tsementzi D, Hatt JK, Sullivan MB, Konstantinidis KT. Prevalence of viral photosynthesis genes along a freshwater to saltwater transect in Southeast USA. Environmental Microbiology Reports. PMID 31265211 DOI: 10.1111/1758-2229.12780  0.442
2019 Tsementzi D, Rodriguez-R LM, Ruiz-Perez CA, Meziti A, Hatt JK, Konstantinidis KT. Ecogenomic characterization of widespread, closely-related SAR11 clades of the freshwater genus "Candidatus Fonsibacter" and proposal of Ca. Fonsibacter lacus sp. nov. Systematic and Applied Microbiology. PMID 31085022 DOI: 10.1016/J.Syapm.2019.03.007  0.4
2019 Ramírez AS, Vega-Orellana OM, Viver T, Poveda JB, Rosales RS, Poveda CG, Spergser J, Szostak MP, Caballero MJ, Ressel L, Bradbury JM, Mar Tavío M, Karthikeyan S, Amann R, Konstantinidis KT, et al. First description of two moderately halophilic and psychrotolerant Mycoplasma species isolated from cephalopods and proposal of Mycoplasma marinum sp. nov. and Mycoplasma todarodis sp. nov. Systematic and Applied Microbiology. PMID 31072660 DOI: 10.1016/J.Syapm.2019.04.003  0.356
2019 Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, ... ... Konstantinidis KT, et al. Consent insufficient for data release-Response. Science (New York, N.Y.). 364: 446. PMID 31048484 DOI: 10.1126/Science.Aax7509  0.743
2019 Karthikeyan S, Rodriguez-R LM, Heritier-Robbins P, Kim M, Overholt WA, Gaby JC, Hatt JK, Spain JC, Rosselló-Móra R, Huettel M, Kostka JE, Konstantinidis KT. "Candidatus Macondimonas diazotrophica", a novel gammaproteobacterial genus dominating crude-oil-contaminated coastal sediments. The Isme Journal. PMID 30952995 DOI: 10.1038/S41396-019-0400-5  0.352
2019 Feng J, Penton CR, He Z, Van Nostrand JD, Yuan MM, Wu L, Wang C, Qin Y, Shi ZJ, Guo X, Schuur EAG, Luo Y, Bracho R, Konstantinidis KT, Cole JR, et al. Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils. Mbio. 10. PMID 30808694 DOI: 10.1128/Mbio.02521-18  0.792
2019 Shin B, Kim M, Zengler K, Chin KJ, Overholt WA, Gieg LM, Konstantinidis KT, Kostka JE. Anaerobic degradation of hexadecane and phenanthrene coupled to sulfate reduction by enriched consortia from northern Gulf of Mexico seafloor sediment. Scientific Reports. 9: 1239. PMID 30718896 DOI: 10.1038/S41598-018-36567-X  0.391
2019 Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, ... ... Konstantinidis KT, et al. Toward unrestricted use of public genomic data. Science (New York, N.Y.). 363: 350-352. PMID 30679363 DOI: 10.1126/Science.Aaw1280  0.744
2019 Johnston ER, Kim M, Hatt JK, Phillips JR, Yao Q, Song Y, Hazen TC, Mayes MA, Konstantinidis KT. Phosphate addition increases tropical forest soil respiration primarily by deconstraining microbial population growth Soil Biology and Biochemistry. 130: 43-54. DOI: 10.1016/J.Soilbio.2018.11.026  0.415
2019 Pegoraro E, Mauritz M, Bracho R, Ebert C, Dijkstra P, Hungate BA, Konstantinidis KT, Luo Y, Schädel C, Tiedje JM, Zhou J, Schuur EA. Glucose addition increases the magnitude and decreases the age of soil respired carbon in a long-term permafrost incubation study Soil Biology and Biochemistry. 129: 201-211. DOI: 10.1016/J.Soilbio.2018.10.009  0.615
2018 Jain C, Rodriguez-R LM, Phillippy AM, Konstantinidis KT, Aluru S. High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries. Nature Communications. 9: 5114. PMID 30504855 DOI: 10.1038/S41467-018-07641-9  0.435
2018 Castro JC, Rodriguez-R LM, Harvey WT, Weigand MR, Hatt JK, Carter MQ, Konstantinidis KT. imGLAD: accurate detection and quantification of target organisms in metagenomes. Peerj. 6: e5882. PMID 30405973 DOI: 10.7287/Peerj.Preprints.26515V1  0.416
2018 Meziti A, Tsementzi D, Rodriguez-R LM, Hatt JK, Karayanni H, Kormas KA, Konstantinidis KT. Quantifying the changes in genetic diversity within sequence-discrete bacterial populations across a spatial and temporal riverine gradient. The Isme Journal. PMID 30397261 DOI: 10.1038/S41396-018-0307-6  0.414
2018 Zhang SY, Tsementzi D, Hatt JK, Bivins A, Khelurkar N, Brown J, Tripathi SN, Konstantinidis KT. Intensive allochthonous inputs along the Ganges River and their effect on microbial community composition and dynamics. Environmental Microbiology. PMID 30325092 DOI: 10.1111/1462-2920.14439  0.445
2018 Liang J, Zhou Z, Huo C, Shi Z, Cole JR, Huang L, Konstantinidis KT, Li X, Liu B, Luo Z, Penton CR, Schuur EAG, Tiedje JM, Wang YP, Wu L, et al. More replenishment than priming loss of soil organic carbon with additional carbon input. Nature Communications. 9: 3175. PMID 30093611 DOI: 10.1038/S41467-018-05667-7  0.762
2018 Ganesh S, Bertagnolli AD, Bristow LA, Padilla CC, Blackwood N, Aldunate M, Bourbonnais A, Altabet MA, Malmstrom RR, Woyke T, Ulloa O, Konstantinidis KT, Thamdrup B, Stewart FJ. Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria. The Isme Journal. PMID 29991764 DOI: 10.1038/S41396-018-0223-9  0.67
2018 Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Konstantinidis KT, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 660. PMID 29979671 DOI: 10.1038/Nbt0718-660A  0.682
2018 Kim M, Weigand MR, Oh S, Hatt JK, Krishnan R, Tezel U, Pavlostathis SG, Konstantinidis KT. Widely used benzalkonium chloride disinfectants can promote antibiotic resistance. Applied and Environmental Microbiology. PMID 29959242 DOI: 10.1128/Aem.01201-18  0.315
2018 Rodriguez-R LM, Gunturu S, Harvey WT, Rosselló-Mora R, Tiedje JM, Cole JR, Konstantinidis KT. The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level. Nucleic Acids Research. PMID 29905870 DOI: 10.1093/Nar/Gky467  0.61
2018 Liang J, Xia J, Shi Z, Jiang L, Ma S, Lu X, Mauritz M, Natali SM, Pegoraro E, Penton CR, Plaza C, Salmon VG, Celis G, Cole JR, Konstantinidis KT, et al. Biotic responses buffer warming-induced soil organic carbon loss in Arctic tundra. Global Change Biology. PMID 29802797 DOI: 10.1111/Gcb.14325  0.777
2018 Rodriguez-R LM, Gunturu S, Tiedje JM, Cole JR, Konstantinidis KT. Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity. Msystems. 3. PMID 29657970 DOI: 10.1128/mSystems.00039-18  0.491
2018 Kim M, Hatt JK, Weigand MR, Krishnan R, Pavlostathis SG, Konstantinidis KT. Genomic and transcriptomic insights into how bacteria withstand high concentrations of benzalkonium chloride biocides. Applied and Environmental Microbiology. PMID 29654181 DOI: 10.1128/Aem.00197-18  0.343
2018 Tsementzi D, Castro Gordillo J, Mahagna M, Gottlieb Y, Konstantinidis KT. Comparison of closely related, uncultivated Coxiella tick endosymbiont population genomes reveals clues about the mechanisms of symbiosis. Environmental Microbiology. PMID 29575448 DOI: 10.1111/1462-2920.14104  0.458
2018 Cardenas E, Orellana LH, Konstantinidis KT, Mohn WW. Effects of timber harvesting on the genetic potential for carbon and nitrogen cycling in five North American forest ecozones. Scientific Reports. 8: 3142. PMID 29453368 DOI: 10.1038/S41598-018-21197-0  0.428
2018 Viver T, Orellana L, González-Torres P, Díaz S, Urdiain M, Farías ME, Benes V, Kaempfer P, Shahinpei A, Ali Amoozegar M, Amann R, Antón J, Konstantinidis KT, Rosselló-Móra R. Genomic comparison between members of the Salinibacteraceae family, and description of a new species of Salinibacter (Salinibacter altiplanensis sp. nov.) isolated from high altitude hypersaline environments of the Argentinian Altiplano. Systematic and Applied Microbiology. PMID 29429564 DOI: 10.1016/J.Syapm.2017.12.004  0.407
2018 Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Konstantinidis KT, et al. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 36: 196. PMID 29406516 DOI: 10.1038/Nbt0218-196A  0.707
2018 Rodriguez-R LM, Castro JC, Kyrpides NC, Cole JR, Tiedje JM, Konstantinidis KT. How much do rRNA gene surveys underestimate extant bacterial diversity? Applied and Environmental Microbiology. PMID 29305502 DOI: 10.1128/Aem.00014-18  0.614
2017 Deng J, Auchtung J, Konstantinidis KT, Caro-Quintero A, Brettar I, Höfle M, Tiedje JM. Divergence in gene regulation contributes to sympatric speciation of Shewanella baltica strains. Applied and Environmental Microbiology. PMID 29222101 DOI: 10.1128/Aem.02015-17  0.641
2017 Orellana LH, Chee-Sanford JC, Sanford RA, Löffler FE, Konstantinidis KT. Year-round shotgun metagenomes reveal stable microbial communities in agricultural soils and novel ammonia oxidizers responding to fertilization. Applied and Environmental Microbiology. PMID 29101194 DOI: 10.1128/Aem.01646-17  0.688
2017 Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, ... ... Konstantinidis KT, et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 35: 725-731. PMID 28787424 DOI: 10.1038/Nbt.3893  0.725
2017 Konstantinidis KT, Rosselló-Móra R, Amann R. Uncultivated microbes in need of their own taxonomy. The Isme Journal. PMID 28731467 DOI: 10.1038/Ismej.2017.113  0.448
2017 Yuan MM, Zhang J, Xue K, Wu L, Deng Y, Deng J, Hale L, Zhou X, He Z, Yang Y, Van Nostrand JD, Schuur EAG, Konstantinidis KT, Penton CR, Cole JR, et al. Microbial functional diversity covaries with permafrost thaw-induced environmental heterogeneity in tundra soil. Global Change Biology. PMID 28715138 DOI: 10.1111/Gcb.13820  0.817
2017 Cheng L, Zhang N, Yuan M, Xiao J, Qin Y, Deng Y, Tu Q, Xue K, Van Nostrand JD, Wu L, He Z, Zhou X, Leigh MB, Konstantinidis KT, Schuur EA, et al. Warming enhances old organic carbon decomposition through altering functional microbial communities. The Isme Journal. PMID 28430189 DOI: 10.1038/Ismej.2017.48  0.67
2017 Pena-Gonzalez A, Marston CK, Rodriguez-R LM, Kolton CB, Garcia-Diaz J, Theppote A, Frace M, Konstantinidis KT, Hoffmaster AR. Draft Genome Sequence of Bacillus cereus LA2007, a Human-Pathogenic Isolate Harboring Anthrax-Like Plasmids. Genome Announcements. 5. PMID 28428293 DOI: 10.1128/Genomea.00181-17  0.433
2017 Viver T, Orellana LH, Hatt JK, Urdiain M, Díaz S, Richter M, Antón J, Avian M, Amann R, Konstantinidis KT, Rosselló-Móra R. The low diverse gastric microbiome of the jellyfish Cotylorhiza tuberculata is dominated by four novel taxa. Environmental Microbiology. PMID 28419691 DOI: 10.1111/1462-2920.13763  0.343
2017 Wang Y, Hatt JK, Tsementzi D, Rodriguez-R LM, Ruiz-Pérez CA, Weigand MR, Kizer H, Maresca G, Krishnan R, Poretsky R, Spain JC, Konstantinidis KT. Quantifying the importance of the rare biosphere for microbial community response to organic pollutants in a freshwater ecosystem. Applied and Environmental Microbiology. PMID 28258138 DOI: 10.1128/Aem.03321-16  0.476
2017 Orellana LH, Rodriguez-R LM, Konstantinidis KT. ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores. Nucleic Acids Research. 45: e14. PMID 28180325 DOI: 10.1093/Nar/Gkw900  0.4
2016 Kleindienst S, Higgins SA, Tsementzi D, Chen G, Konstantinidis KT, Mack EE, Löffler FE. 'Candidatus Dichloromethanomonas elyunquensis' gen. nov., sp. nov., a dichloromethane-degrading anaerobe of the Peptococcaceae family. Systematic and Applied Microbiology. PMID 28292625 DOI: 10.1016/J.Syapm.2016.12.001  0.424
2016 Zhang X, Johnston ER, Li L, Konstantinidis KT, Han X. Experimental warming reveals positive feedbacks to climate change in the Eurasian Steppe. The Isme Journal. PMID 27996978 DOI: 10.1038/Ismej.2016.180  0.452
2016 Huang AD, Luo C, Pena-Gonzalez A, Weigand MR, Tarr C, Konstantinidis KT. Metagenomics of two severe foodborne outbreaks provides diagnostic signatures and signs of co-infection not attainable by traditional methods. Applied and Environmental Microbiology. PMID 27881416 DOI: 10.1128/Aem.02577-16  0.352
2016 Ertekin E, Konstantinidis KT, Tezel U. A Rieske-type Oxygenase of Pseudomonas sp. BIOMIG1 converts Benzalkonium Chlorides to Benzyldimethyl Amine. Environmental Science & Technology. PMID 27792326 DOI: 10.1021/Acs.Est.6B03705  0.353
2016 Tsementzi D, Wu J, Deutsch S, Nath S, Rodriguez-R LM, Burns AS, Ranjan P, Sarode N, Malmstrom RR, Padilla CC, Stone BK, Bristow LA, Larsen M, Glass JB, Thamdrup B, ... ... Konstantinidis KT, et al. SAR11 bacteria linked to ocean anoxia and nitrogen loss. Nature. PMID 27487207 DOI: 10.1038/Nature19068  0.639
2016 Johnston ER, Rodriguez-R LM, Luo C, Yuan MM, Wu L, He Z, Schuur EA, Luo Y, Tiedje JM, Zhou J, Konstantinidis KT. Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem. Frontiers in Microbiology. 7: 579. PMID 27199914 DOI: 10.3389/Fmicb.2016.00579  0.694
2016 Meziti A, Tsementzi D, Kormas KA, Karayanni H, Konstantinidis KT. Anthropogenic effects on bacterial diversity and function along a river-to-estuary gradient in Northwest Greece revealed by metagenomics. Environmental Microbiology. PMID 27001690 DOI: 10.1111/1462-2920.13303  0.458
2016 Ertekin E, Hatt JK, Konstantinidis K, Tezel U. Similar Microbial Consortia and Genes Are Involved in the Biodegradation of Benzalkonium Chlorides in Different Environments. Environmental Science & Technology. PMID 26992451 DOI: 10.1021/Acs.Est.5B05959  0.527
2016 Soto-Giron MJ, Rodriguez-R LM, Luo C, Elk M, Ryu H, Hoelle J, Santo Domingo JW, Konstantinidis KT. Characterization of biofilms developing on hospital shower hoses and implications for nosocomial infections. Applied and Environmental Microbiology. PMID 26969701 DOI: 10.1128/Aem.03529-15  0.406
2016 Higgins SA, Welsh A, Orellana LH, Konstantinidis KT, Chee-Sanford JC, Sanford RA, Schadt CW, Löffler FE. Detection and Diversity of Fungal Nitric Oxide Reductase Genes (p450nor) in Agricultural Soils. Applied and Environmental Microbiology. PMID 26969694 DOI: 10.1128/Aem.00243-16  0.64
2016 Kleindienst S, Higgins SA, Tsementzi D, Konstantinidis KT, Mack EE, Löffler FE. Draft Genome Sequence of a Strictly Anaerobic Dichloromethane-Degrading Bacterium. Genome Announcements. 4. PMID 26941136 DOI: 10.1128/Genomea.00037-16  0.444
2016 Federhen S, Rossello-Mora R, Klenk HP, Tindall BJ, Konstantinidis KT, Whitman WB, Brown D, Labeda D, Ussery D, Garrity GM, Colwell RR, Hasan N, Graf J, Parte A, Yarza P, et al. Meeting report: GenBank microbial genomic taxonomy workshop (12-13 May, 2015) Standards in Genomic Sciences. DOI: 10.1186/S40793-016-0134-1  0.444
2016 Xue K, M. Yuan M, J. Shi Z, Qin Y, Deng Y, Cheng L, Wu L, He Z, Van Nostrand JD, Bracho R, Natali S, Schuur EAG, Luo C, Konstantinidis KT, Wang Q, et al. Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming Nature Climate Change. 6: 595-600. DOI: 10.1038/Nclimate2940  0.614
2016 Bracho R, Natali S, Pegoraro E, Crummer KG, Schädel C, Celis G, Hale L, Wu L, Yin H, Tiedje JM, Konstantinidis KT, Luo Y, Zhou J, Schuur EAG. Temperature sensitivity of organic matter decomposition of permafrost-region soils during laboratory incubations Soil Biology and Biochemistry. 97: 1-14. DOI: 10.1016/J.Soilbio.2016.02.008  0.644
2015 Varghese NJ, Mukherjee S, Ivanova N, Konstantinidis KT, Mavrommatis K, Kyrpides NC, Pati A. Microbial species delineation using whole genome sequences. Nucleic Acids Research. 43: 6761-71. PMID 26150420 DOI: 10.1093/Nar/Gkv657  0.419
2015 Weigand MR, Pena-Gonzalez A, Shirey TB, Broeker RG, Ishaq MK, Konstantinidis KT, Raphael BH. Genome-based discrimination between Group I Clostridium botulinum and Clostridium sporogenes strains: implications for bacterial taxonomy. Applied and Environmental Microbiology. PMID 26048939 DOI: 10.1128/Aem.01159-15  0.391
2015 Rodriguez-R LM, Overholt WA, Hagan C, Huettel M, Kostka JE, Konstantinidis KT. Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill. The Isme Journal. PMID 25689026 DOI: 10.1038/Ismej.2015.5  0.303
2015 Konstantinidis KT, Rosselló-Móra R. Classifying the uncultivated microbial majority: A place for metagenomic data in the Candidatus proposal. Systematic and Applied Microbiology. 38: 223-230. PMID 25681255 DOI: 10.1016/J.Syapm.2015.01.001  0.424
2015 Vital M, Chai B, Østman B, Cole J, Konstantinidis KT, Tiedje JM. Gene expression analysis of E. coli strains provides insights into the role of gene regulation in diversification. The Isme Journal. 9: 1130-40. PMID 25343512 DOI: 10.1038/Ismej.2014.204  0.508
2015 Caro-Quintero A, Konstantinidis KT. Inter-phylum HGT has shaped the metabolism of many mesophilic and anaerobic bacteria. The Isme Journal. 9: 958-67. PMID 25314320 DOI: 10.1038/Ismej.2014.193  0.477
2015 Liang J, Li D, Shi Z, Tiedje JM, Zhou J, Schuur EAG, Konstantinidis KT, Luo Y. Methods for estimating temperature sensitivity of soil organic matter based on incubation data: A comparative evaluation Soil Biology and Biochemistry. 80: 127-135. DOI: 10.1016/J.Soilbio.2014.10.005  0.56
2014 Tsementzi D, Poretsky R, Rodriguez-R LM, Luo C, Konstantinidis KT. Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities. Environmental Microbiology Reports. 6: 640-55. PMID 25756118 DOI: 10.1111/1758-2229.12180  0.404
2014 Oh S, Kurt Z, Tsementzi D, Weigand MR, Kim M, Hatt JK, Tandukar M, Pavlostathis SG, Spain JC, Konstantinidis KT. Microbial community degradation of widely used quaternary ammonium disinfectants. Applied and Environmental Microbiology. 80: 5892-900. PMID 24951783 DOI: 10.1128/Aem.01255-14  0.433
2014 Orellana LH, Rodriguez-R LM, Higgins S, Chee-Sanford JC, Sanford RA, Ritalahti KM, Löffler FE, Konstantinidis KT. Detecting nitrous oxide reductase (NosZ) genes in soil metagenomes: method development and implications for the nitrogen cycle. Mbio. 5: e01193-14. PMID 24895307 DOI: 10.1128/Mbio.01193-14  0.65
2014 Rodriguez-R LM, Konstantinidis KT. Estimating coverage in metagenomic data sets and why it matters. The Isme Journal. 8: 2349-51. PMID 24824669 DOI: 10.1038/Ismej.2014.76  0.379
2014 Poretsky R, Rodriguez-R LM, Luo C, Tsementzi D, Konstantinidis KT. Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics. Plos One. 9: e93827. PMID 24714158 DOI: 10.1371/Journal.Pone.0093827  0.458
2014 Luo C, Rodriguez-R LM, Konstantinidis KT. MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences. Nucleic Acids Research. 42: e73. PMID 24589583 DOI: 10.1093/Nar/Gku169  0.447
2014 Weigand MR, Ashbolt NJ, Konstantinidis KT, Santo Domingo JW. Genome sequencing reveals the environmental origin of enterococci and potential biomarkers for water quality monitoring. Environmental Science & Technology. 48: 3707-14. PMID 24571132 DOI: 10.1021/Es4054835  0.465
2014 Konstantinidis KT. Do airborne microbes matter for atmospheric chemistry and cloud formation? Environmental Microbiology. 16: 1482-4. PMID 24506523 DOI: 10.1111/1462-2920.12396  0.304
2014 Luo C, Rodriguez-R LM, Johnston ER, Wu L, Cheng L, Xue K, Tu Q, Deng Y, He Z, Shi JZ, Yuan MM, Sherry RA, Li D, Luo Y, Schuur EA, ... ... Konstantinidis KT, et al. Soil microbial community responses to a decade of warming as revealed by comparative metagenomics. Applied and Environmental Microbiology. 80: 1777-86. PMID 24375144 DOI: 10.1128/Aem.03712-13  0.745
2014 Deng J, Brettar I, Luo C, Auchtung J, Konstantinidis KT, Rodrigues JL, Höfle M, Tiedje JM. Stability, genotypic and phenotypic diversity of Shewanella baltica in the redox transition zone of the Baltic Sea. Environmental Microbiology. 16: 1854-66. PMID 24286373 DOI: 10.1111/1462-2920.12344  0.737
2014 Rodriguez-R LM, Konstantinidis KT. Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets. Bioinformatics (Oxford, England). 30: 629-35. PMID 24123672 DOI: 10.1093/Bioinformatics/Btt584  0.458
2014 Rodriguez-R. LM, Konstantinidis KT. Bypassing cultivation to identify bacterial species Microbe. 9: 111-118. DOI: 10.1128/Microbe.9.111.1  0.347
2013 Luo C, Rodriguez-R LM, Konstantinidis KT. A user's guide to quantitative and comparative analysis of metagenomic datasets. Methods in Enzymology. 531: 525-47. PMID 24060135 DOI: 10.1016/B978-0-12-407863-5.00023-X  0.43
2013 Tandukar M, Oh S, Tezel U, Konstantinidis KT, Pavlostathis SG. Long-term exposure to benzalkonium chloride disinfectants results in change of microbial community structure and increased antimicrobial resistance. Environmental Science & Technology. 47: 9730-8. PMID 23924280 DOI: 10.1021/Es401507K  0.352
2013 Oh S, Tandukar M, Pavlostathis SG, Chain PS, Konstantinidis KT. Microbial community adaptation to quaternary ammonium biocides as revealed by metagenomics. Environmental Microbiology. 15: 2850-64. PMID 23731340 DOI: 10.1111/1462-2920.12154  0.609
2013 Solonenko SA, Ignacio-Espinoza JC, Alberti A, Cruaud C, Hallam S, Konstantinidis K, Tyson G, Wincker P, Sullivan MB. Sequencing platform and library preparation choices impact viral metagenomes. Bmc Genomics. 14: 320. PMID 23663384 DOI: 10.1186/1471-2164-14-320  0.688
2013 Weigand MR, Ryu H, Bozcek L, Konstantinidis KT, Santo Domingo JW. Draft Genome Sequence of Catellicoccus marimammalium, a Novel Species Commonly Found in Gull Feces. Genome Announcements. 1. PMID 23405330 DOI: 10.1128/Genomea.00019-12  0.451
2013 DeLeon-Rodriguez N, Lathem TL, Rodriguez-R LM, Barazesh JM, Anderson BE, Beyersdorf AJ, Ziemba LD, Bergin M, Nenes A, Konstantinidis KT. Microbiome of the upper troposphere: species composition and prevalence, effects of tropical storms, and atmospheric implications. Proceedings of the National Academy of Sciences of the United States of America. 110: 2575-80. PMID 23359712 DOI: 10.1073/Pnas.1212089110  0.356
2013 Löffler FE, Yan J, Ritalahti KM, Adrian L, Edwards EA, Konstantinidis KT, Müller JA, Fullerton H, Zinder SH, Spormann AM. Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi. International Journal of Systematic and Evolutionary Microbiology. 63: 625-35. PMID 22544797 DOI: 10.1099/Ijs.0.034926-0  0.362
2012 Sanford RA, Wagner DD, Wu Q, Chee-Sanford JC, Thomas SH, Cruz-García C, Rodríguez G, Massol-Deyá A, Krishnani KK, Ritalahti KM, Nissen S, Konstantinidis KT, Löffler FE. Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils. Proceedings of the National Academy of Sciences of the United States of America. 109: 19709-14. PMID 23150571 DOI: 10.1073/Pnas.1211238109  0.597
2012 Oh S, Buddenborg S, Yoder-Himes DR, Tiedje JM, Konstantinidis KT. Genomic diversity of Escherichia isolates from diverse habitats. Plos One. 7: e47005. PMID 23056556 DOI: 10.1371/Journal.Pone.0047005  0.555
2012 Lin X, Green S, Tfaily MM, Prakash O, Konstantinidis KT, Corbett JE, Chanton JP, Cooper WT, Kostka JE. Microbial community structure and activity linked to contrasting biogeochemical gradients in bog and fen environments of the Glacial Lake Agassiz Peatland. Applied and Environmental Microbiology. 78: 7023-31. PMID 22843538 DOI: 10.1128/Aem.01750-12  0.428
2012 Wagner DD, Hug LA, Hatt JK, Spitzmiller MR, Padilla-Crespo E, Ritalahti KM, Edwards EA, Konstantinidis KT, Löffler FE. Genomic determinants of organohalide-respiration in Geobacter lovleyi, an unusual member of the Geobacteraceae. Bmc Genomics. 13: 200. PMID 22616984 DOI: 10.1186/1471-2164-13-200  0.39
2012 Caro-Quintero A, Ritalahti KM, Cusick KD, Löffler FE, Konstantinidis KT. The chimeric genome of Sphaerochaeta: nonspiral spirochetes that break with the prevalent dogma in spirochete biology. Mbio. 3. PMID 22589287 DOI: 10.1128/Mbio.00025-12  0.484
2012 Luo C, Tsementzi D, Kyrpides N, Read T, Konstantinidis KT. Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample. Plos One. 7: e30087. PMID 22347999 DOI: 10.1371/Journal.Pone.0030087  0.438
2012 Caro-Quintero A, Auchtung J, Deng J, Brettar I, Höfle M, Tiedje JM, Konstantinidis KT. Genome sequencing of five Shewanella baltica strains recovered from the oxic-anoxic interface of the Baltic Sea. Journal of Bacteriology. 194: 1236. PMID 22328742 DOI: 10.1128/Jb.06468-11  0.64
2012 Caro-Quintero A, Konstantinidis KT. Bacterial species may exist, metagenomics reveal. Environmental Microbiology. 14: 347-55. PMID 22151572 DOI: 10.1111/J.1462-2920.2011.02668.X  0.379
2012 Luo C, Tsementzi D, Kyrpides NC, Konstantinidis KT. Individual genome assembly from complex community short-read metagenomic datasets. The Isme Journal. 6: 898-901. PMID 22030673 DOI: 10.1038/Ismej.2011.147  0.484
2011 Oh S, Caro-Quintero A, Tsementzi D, DeLeon-Rodriguez N, Luo C, Poretsky R, Konstantinidis KT. Metagenomic insights into the evolution, function, and complexity of the planktonic microbial community of Lake Lanier, a temperate freshwater ecosystem. Applied and Environmental Microbiology. 77: 6000-11. PMID 21764968 DOI: 10.1128/Aem.00107-11  0.511
2011 Luo C, Walk ST, Gordon DM, Feldgarden M, Tiedje JM, Konstantinidis KT. Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species. Proceedings of the National Academy of Sciences of the United States of America. 108: 7200-5. PMID 21482770 DOI: 10.1073/Pnas.1015622108  0.556
2011 Luo C, Konstantinidis KT. Phosphorus-related gene content is similar in Prochlorococcus populations from the North Pacific and North Atlantic Oceans. Proceedings of the National Academy of Sciences of the United States of America. 108: E62-3; author reply . PMID 21474783 DOI: 10.1073/Pnas.1018662108  0.403
2011 Caro-Quintero A, Deng J, Auchtung J, Brettar I, Höfle MG, Klappenbach J, Konstantinidis KT. Unprecedented levels of horizontal gene transfer among spatially co-occurring Shewanella bacteria from the Baltic Sea. The Isme Journal. 5: 131-40. PMID 20596068 DOI: 10.1038/Ismej.2010.93  0.595
2010 Oh S, Yoder-Himes DR, Tiedje J, Park J, Konstantinidis KT. Evaluating the performance of oligonucleotide microarrays for bacterial strains with increasing genetic divergence from the reference strain. Applied and Environmental Microbiology. 76: 2980-8. PMID 20228107 DOI: 10.1128/Aem.02826-09  0.507
2010 Yoder-Himes DR, Konstantinidis KT, Tiedje JM. Identification of potential therapeutic targets for Burkholderia cenocepacia by comparative transcriptomics. Plos One. 5: e8724. PMID 20090946 DOI: 10.1371/Journal.Pone.0008724  0.567
2009 Konstantinidis KT, Serres MH, Romine MF, Rodrigues JL, Auchtung J, McCue LA, Lipton MS, Obraztsova A, Giometti CS, Nealson KH, Fredrickson JK, Tiedje JM. Comparative systems biology across an evolutionary gradient within the Shewanella genus. Proceedings of the National Academy of Sciences of the United States of America. 106: 15909-14. PMID 19805231 DOI: 10.1073/Pnas.0902000106  0.702
2009 Caro-Quintero A, Rodriguez-Castaño GP, Konstantinidis KT. Genomic insights into the convergence and pathogenicity factors of Campylobacter jejuni and Campylobacter coli species. Journal of Bacteriology. 191: 5824-31. PMID 19617370 DOI: 10.1128/Jb.00519-09  0.452
2009 Konstantinidis KT, Braff J, Karl DM, DeLong EF. Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre. Applied and Environmental Microbiology. 75: 5345-55. PMID 19542347 DOI: 10.1128/Aem.00473-09  0.811
2008 Konstantinidis KT, DeLong EF. Genomic patterns of recombination, clonal divergence and environment in marine microbial populations. The Isme Journal. 2: 1052-65. PMID 18580971 DOI: 10.1038/Ismej.2008.62  0.631
2008 Pham VD, Konstantinidis KT, Palden T, DeLong EF. Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre. Environmental Microbiology. 10: 2313-30. PMID 18494796 DOI: 10.1111/J.1462-2920.2008.01657.X  0.767
2008 Song W, Juhn FS, Naiman DQ, Konstantinidis KT, Gardner TS, Ward MJ. Predicting sigma28 promoters in eleven Shewanella genomes. Fems Microbiology Letters. 283: 223-30. PMID 18430000 DOI: 10.1111/J.1574-6968.2008.01175.X  0.324
2008 Rich VI, Konstantinidis K, DeLong EF. Design and testing of 'genome-proxy' microarrays to profile marine microbial communities. Environmental Microbiology. 10: 506-21. PMID 18028413 DOI: 10.1111/J.1462-2920.2007.01471.X  0.791
2007 Konstantinidis KT, Tiedje JM. Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Current Opinion in Microbiology. 10: 504-9. PMID 17923431 DOI: 10.1016/J.Mib.2007.08.006  0.57
2007 Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. International Journal of Systematic and Evolutionary Microbiology. 57: 81-91. PMID 17220447 DOI: 10.1099/Ijs.0.64483-0  0.55
2006 Hallam SJ, Konstantinidis KT, Putnam N, Schleper C, Watanabe Y, Sugahara J, Preston C, de la Torre J, Richardson PM, DeLong EF. Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proceedings of the National Academy of Sciences of the United States of America. 103: 18296-301. PMID 17114289 DOI: 10.1073/Pnas.0608549103  0.823
2006 Konstantinidis KT, Ramette A, Tiedje JM. The bacterial species definition in the genomic era. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 1929-40. PMID 17062412 DOI: 10.1098/Rstb.2006.1920  0.56
2006 Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agulló L, Reyes VL, Hauser L, Córdova M, Gómez L, González M, Land M, Lao V, Larimer F, LiPuma JJ, Mahenthiralingam E, et al. Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proceedings of the National Academy of Sciences of the United States of America. 103: 15280-7. PMID 17030797 DOI: 10.1073/Pnas.0606924103  0.816
2006 Konstantinidis KT, Ramette A, Tiedje JM. Toward a more robust assessment of intraspecies diversity, using fewer genetic markers. Applied and Environmental Microbiology. 72: 7286-93. PMID 16980418 DOI: 10.1128/Aem.01398-06  0.597
2005 Konstantinidis KT, Tiedje JM. Towards a genome-based taxonomy for prokaryotes. Journal of Bacteriology. 187: 6258-64. PMID 16159757 DOI: 10.1128/Jb.187.18.6258-6264.2005  0.568
2005 Konstantinidis KT, Tiedje JM. Genomic insights that advance the species definition for prokaryotes. Proceedings of the National Academy of Sciences of the United States of America. 102: 2567-72. PMID 15701695 DOI: 10.1073/Pnas.0409727102  0.548
2005 Kolker E, Picone AF, Galperin MY, Romine MF, Higdon R, Makarova KS, Kolker N, Anderson GA, Qiu X, Auberry KJ, Babnigg G, Beliaev AS, Edlefsen P, Elias DA, Gorby YA, ... ... Konstantinidis KT, et al. Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. Proceedings of the National Academy of Sciences of the United States of America. 102: 2099-104. PMID 15684069 DOI: 10.1073/Pnas.0409111102  0.798
2004 Konstantinidis KT, Tiedje JM. Trends between gene content and genome size in prokaryotic species with larger genomes. Proceedings of the National Academy of Sciences of the United States of America. 101: 3160-5. PMID 14973198 DOI: 10.1073/Pnas.0308653100  0.589
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