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David Lee Smith - Publications

Affiliations: 
1974-1984 Chemistry University of Utah, Salt Lake City, UT 
 1984-1994 Medicinal Chemistry Purdue University, West Lafayette, IN, United States 
 1994-2004 Chemistry The University of Nebraska - Lincoln, Lincoln, NE 
Area:
Physical chemistry, analytical chemistry, mass spectrometry, hydrogen exchange
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57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2007 Chen J, Concel VJ, Bhatla S, Rajeshwaran R, Smith DL, Varadarajan M, Backscheider KL, Bockrath RA, Petschek JP, Vaughn JC. Alternative splicing of an rnp-4f mRNA isoform retaining an evolutionarily-conserved 5'-UTR intronic element is developmentally regulated and shown via RNAi to be essential for normal central nervous system development in Drosophila melanogaster. Gene. 399: 91-104. PMID 17582706 DOI: 10.1016/j.gene.2007.04.038  0.327
2005 Wang L, Smith DL. Capsid structure and dynamics of a human rhinovirus probed by hydrogen exchange mass spectrometry. Protein Science : a Publication of the Protein Society. 14: 1661-72. PMID 15883190 DOI: 10.1110/Ps.051390405  0.654
2004 Pan H, Smith DL. Amide hydrogen exchange/mass spectrometry applied to cooperative protein folding: equilibrium unfolding of Staphylococcus aureus aldolase. Methods in Enzymology. 380: 285-308. PMID 15051342 DOI: 10.1016/S0076-6879(04)80013-2  0.671
2004 Pan H, Raza AS, Smith DL. Equilibrium and kinetic folding of rabbit muscle triosephosphate isomerase by hydrogen exchange mass spectrometry. Journal of Molecular Biology. 336: 1251-63. PMID 15037083 DOI: 10.1016/J.Jmb.2003.12.076  0.671
2003 Pan H, Smith DL. Quaternary structure of aldolase leads to differences in its folding and unfolding intermediates. Biochemistry. 42: 5713-21. PMID 12741828 DOI: 10.1021/Bi027388Q  0.652
2003 Wang L, Smith DL. Downsizing improves sensitivity 100-fold for hydrogen exchange-mass spectrometry. Analytical Biochemistry. 314: 46-53. PMID 12633601 DOI: 10.1016/S0003-2697(02)00620-6  0.633
2002 Wang L, Smith DL. Probing protein structure and dynamics by hydrogen exchange-mass spectrometry. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 17.6. PMID 18429224 DOI: 10.1002/0471140864.Ps1706S28  0.645
2002 Wang L, Pan H, Smith DL. Hydrogen exchange-mass spectrometry: optimization of digestion conditions. Molecular & Cellular Proteomics : McP. 1: 132-8. PMID 12096131 DOI: 10.1074/Mcp.M100009-Mcp200  0.748
2001 Gmeiner WH, Xu I, Horita DA, Smithgall TE, Engen JR, Smith DL, Byrd RA. Intramolecular binding of a proximal PPII helix to an SH3 domain in the fusion protein SH3Hck : PPIIhGAP. Cell Biochemistry and Biophysics. 35: 115-26. PMID 11892787 DOI: 10.1385/Cbb:35:2:115  0.476
2001 Chen J, Walter S, Horwich AL, Smith DL. Folding of malate dehydrogenase inside the GroEL-GroES cavity. Nature Structural Biology. 8: 721-8. PMID 11473265 DOI: 10.1038/90443  0.432
2001 Wang L, Lane LC, Smith DL. Detecting structural changes in viral capsids by hydrogen exchange and mass spectrometry Protein Science. 10: 1234-1243. PMID 11369862 DOI: 10.1110/Ps.100101  0.624
2001 Engen JR, Smith DL. Investigating protein structure and dynamics by hydrogen exchange MS. Analytical Chemistry. 73: 256A-265A. PMID 11354508 DOI: 10.1021/Ac012452F  0.524
2001 Chen J, Smith DL. Amide hydrogen exchange shows that malate dehydrogenase is a folded monomer at pH 5. Protein Science : a Publication of the Protein Society. 10: 1079-83. PMID 11316888 DOI: 10.1110/Ps.53201  0.42
2000 Engen JR, Smith DL. Investigating the higher order structure of proteins. Hydrogen exchange, proteolytic fragmentation, and mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 146: 95-112. PMID 10948498 DOI: 10.1385/1-59259-045-4:95  0.579
2000 Chen J, Smith DL. Unfolding and disassembly of the chaperonin GroEL occurs via a tetradecameric intermediate with a folded equatorial domain. Biochemistry. 39: 4250-8. PMID 10757973  0.43
1999 Engen JR, Gmeiner WH, Smithgall TE, Smith DL. Hydrogen exchange shows peptide binding stabilizes motions in Hck SH2. Biochemistry. 38: 8926-35. PMID 10413466 DOI: 10.1021/Bi982611Y  0.566
1999 Engen JR, Smithgall TE, Gmeiner WH, Smith DL. Comparison of SH3 and SH2 domain dynamics when expressed alone or in an SH(3+2) construct: the role of protein dynamics in functional regulation. Journal of Molecular Biology. 287: 645-56. PMID 10092465 DOI: 10.1006/Jmbi.1999.2619  0.483
1999 Deng Y, Pan H, Smith DL. Selective Isotope Labeling Demonstrates That Hydrogen Exchange at Individual Peptide Amide Linkages Can Be Determined by Collision-Induced Dissociation Mass Spectrometry Journal of the American Chemical Society. 121: 1966-1967. DOI: 10.1021/Ja982814+  0.658
1998 Chen J, Smith DL, Griep MA. The role of the 6 lysines and the terminal amine of Escherichia coli single-strand binding protein in its binding of single-stranded DNA. Protein Science : a Publication of the Protein Society. 7: 1781-8. PMID 10082375 DOI: 10.1002/Pro.5560070813  0.46
1997 Engen JR, Smithgall TE, Gmeiner WH, Smith DL. Identification and localization of slow, natural, cooperative unfolding in the hematopoietic cell kinase SH3 domain by amide hydrogen exchange and mass spectrometry. Biochemistry. 36: 14384-91. PMID 9398156 DOI: 10.1021/Bi971635M  0.568
1997 Smith DL, Deng Y, Zhang Z. Probing the non-covalent structure of proteins by amide hydrogen exchange and mass spectrometry. Journal of Mass Spectrometry : Jms. 32: 135-46. PMID 9102198 DOI: 10.1002/(SICI)1096-9888(199702)32:2<135::AID-JMS486>3.0.CO;2-M  0.303
1991 Smith JB, Miesbauer LR, Leeds J, Smith DL, Loo JA, Smith RD, Edmonds CG. Mass spectrometric analysis of lens β-crystallins International Journal of Mass Spectrometry and Ion Processes. 111: 229-245. DOI: 10.1016/0168-1176(91)85057-S  0.321
1987 Phillipson DW, Edmonds CG, Crain PF, Smith DL, Davis DR, McCloskey JA. Isolation and structure elucidation of an epoxide derivative of the hypermodified nucleoside queuosine from Escherichia coli transfer RNA. The Journal of Biological Chemistry. 262: 3462-71. PMID 3102486  0.482
1984 Katze JR, Gündüz U, Smith DL, Cheng CS, McCloskey JA. Evidence that the nucleic acid base queuine is incorporated intact into tRNA by animal cells. Biochemistry. 23: 1171-6. PMID 6561966 DOI: 10.1021/Bi00301A022  0.467
1983 Sethi SK, Smith DL, McCloskey JA. Determination of active hydrogen content by fast atom bombardment mass spectrometry following hydrogen-deuterium exchange. Biochemical and Biophysical Research Communications. 112: 126-31. PMID 6838601 DOI: 10.1016/0006-291X(83)91806-5  0.523
1983 Swinton D, Hattman S, Crain PF, Cheng CS, Smith DL, McCloskey JA. Purification and characterization of the unusual deoxynucleoside, alpha-N-(9-beta-D-2'-deoxyribofuranosylpurin-6-yl)glycinamide, specified by the phage Mu modification function. Proceedings of the National Academy of Sciences of the United States of America. 80: 7400-4. PMID 6369315 DOI: 10.1073/Pnas.80.24.7400  0.479
1983 Smith DL, McCloskey JA. Techniques for high sensitivity, high selectivity analysis for trace constituents of nucleic acids International Journal of Mass Spectrometry and Ion Physics. 48: 237-240. DOI: 10.1016/0020-7381(83)87072-7  0.533
1983 Sethi SK, Katze JR, Brizgys L, Cheng CS, Crain PF, Kinoshita T, Smith DL, Yu CT, McCloskey JA. Mass spectrometry of the nucleic acid base queuine International Journal of Mass Spectrometry and Ion Physics. 48: 121-124. DOI: 10.1016/0020-7381(83)87043-0  0.572
1983 PANG H, SCHRAM KH, SMITH DL, GUPTA SP, TOWNSEND LB, MCCLOSKEY JA. ChemInform Abstract: MASS SPECTROMETRY OF NUCLEIC ACID CONSTITUENTS. TRIMETHYLSILYL DERIVATIVES OF NUCLEOSIDES Chemischer Informationsdienst. 14. DOI: 10.1002/chin.198308056  0.498
1983 SCRIBNER JD, SCRIBNER NK, SMITH DL, JENKINS E, MCCLOSKEY JA. ChemInform Abstract: ACETYLATION OF NUCLEOSIDES BY N-ACETOXY-N-ARYLACETAMIDES: DEPENDENCE ON BASE, ARYL GROUP, AND BUFFER COMPOSITION Chemischer Informationsdienst. 14. DOI: 10.1002/Chin.198301354  0.426
1983 Smith DL, Schram KH, McCloskey JA. The negative ion mass spectra of selected nucleosides Biological Mass Spectrometry. 10: 269-275. DOI: 10.1002/Bms.1200100407  0.564
1982 Pang H, Smith DL, Crain PF, Yamaizumi K, Nishimura S, McCloskey JA. Identification of nucleosides in hydrolysates of transfer RNA by high-resolution mass spectrometry. European Journal of Biochemistry / Febs. 127: 459-71. PMID 6184222 DOI: 10.1111/J.1432-1033.1982.Tb06894.X  0.562
1982 Scribner J, Scribner N, Smith D, Jenkins E, McCloskey J. Additions and Corrections - Acylation of Nucleosides by N-Acetoxy-N-arylacetamides: Dependence on Base, Aryl Group, and Buffer Concentration. The Journal of Organic Chemistry. 47: 5427-5428. DOI: 10.1021/Jo00148A623  0.424
1982 Pang H, Schram KH, Smith DL, Gupta SP, Townsend LB, McCloskey JA. Mass spectrometry of nucleic acid constituents. Trimethylsilyl derivatives of nucleosides The Journal of Organic Chemistry. 47: 3923-3932. DOI: 10.1021/jo00141a023  0.493
1982 Scribner JD, Scribner NK, Smith DL, Jenkins E, McCloskey JA. Acetylation of nucleosides by N-acetoxy-N-arylacetamides: dependence on base, aryl group, and buffer composition The Journal of Organic Chemistry. 47: 3143-3145. DOI: 10.1021/jo00137a021  0.421
1981 Stang PJ, Maas G, Smith DL, McCloskey JA. Dication ether salts, R+-O-R+.2CF3SO3-, from the reaction of trifluoromethanesulfonic anhydride with activated ketones Journal of the American Chemical Society. 103: 4837-4845. DOI: 10.1021/Ja00406A028  0.464
1981 Smith DL, McCloskey JA, Mitchell JK. Emitter current controller for field desorption mass spectrometry Analytical Chemistry. 53: 1130-1132. DOI: 10.1021/ac00230a049  0.46
1981 Gelijkens CF, Smith DL, McCloskey JA. Capillary gas chromatography of pyrimidines and purines: N,O-peralkyl and trifluoroacetyl-N,O-alkyl derivatives Journal of Chromatography B: Biomedical Sciences and Applications. 225: 291-299. DOI: 10.1016/S0378-4347(00)80277-7  0.522
1981 STANG PJ, MAAS G, SMITH DL, MCCLOSKEY JA. ChemInform Abstract: DICATION ETHER SALTS, R+-O-R+.2CF3SO3-, FROM THE REACTION OF TRIFLUOROMETHANESULFONIC ANHYDRIDE WITH ACTIVATED KETONES Chemischer Informationsdienst. 12. DOI: 10.1002/chin.198146158  0.406
1979 Scribner NK, Scribner JD, Smith DL, Schram KH, McCloskey JA. Reactions of the carcinogen N-acetoxy-4-acetamidostilbene with nucleosides. Chemico-Biological Interactions. 26: 27-46. PMID 466742 DOI: 10.1016/0009-2797(79)90091-7  0.51
1979 Cory HT, Yamaizumi K, Smith DL, Knowles DR, Broom AD, McCloskey JA. Characterization of blocked nucleosides by mass spectrometry. Benzyl derivatives Journal of Heterocyclic Chemistry. 16: 585-590. DOI: 10.1002/Jhet.5570160336  0.588
1978 Scribner JD, Smith DL, McCloskey JA. Deamination of 1-methylcytosine by the carcinogen N-acetoxy-4-acetamidostilbene: implications for hydrocarbon carcinogenesis The Journal of Organic Chemistry. 43: 2085-2087. DOI: 10.1021/jo00404a065  0.415
1978 SCRIBNER JD, SMITH DL, MCCLOSKEY JA. ChemInform Abstract: DEAMINATION OF 1-METHYLCYTOSINE BY THE CARCINOGEN N-ACETOXY-4-ACETAMIDOSTILBENE- IMPLICATIONS FOR HYDROCARBON CARCINOGENESIS Chemischer Informationsdienst. 9. DOI: 10.1002/chin.197840243  0.423
1977 Fiaux A, Smith DL, Futrell JH. Ion-molecule reaction of CH3 +, C2H5 +, C3H5 + and C3H7 + with unsaturated C2, C3 and C4 hydrocarbons International Journal of Mass Spectrometry and Ion Physics. 25: 281-294. DOI: 10.1016/0020-7381(77)80055-7  0.531
1976 Fiaux A, Smith DL, Futrell JH. Thermal energy reactions of H3 + with methanol International Journal of Mass Spectrometry and Ion Physics. 20: 223-235. DOI: 10.1016/0020-7381(76)80151-9  0.557
1976 Smith RD, Smith DL, Futrell JH. Ion-molecule reactions in H2/rare-gas systems by ion cyclotron resonance II. Reactions in systems of H2 with Ar, Kr and Xe International Journal of Mass Spectrometry and Ion Physics. 19: 395-413. DOI: 10.1016/0020-7381(76)80021-6  0.611
1976 Smith RD, Smith DL, Futrell JH. Ion-molecule reactions in H2/rare-gas systems by ion cyclotron resonance I. Reactions with He and Ne International Journal of Mass Spectrometry and Ion Physics. 19: 369-394. DOI: 10.1016/0020-7381(76)80020-4  0.605
1976 Smith DL, Futrell JH. Rate constant measurement for the reaction of D3 + with H2 Chemical Physics Letters. 40: 229-232. DOI: 10.1016/0009-2614(76)85065-8  0.548
1975 Smith RD, Smith DL, Futrell JH. On the reaction of Kr+ with hydrogen Chemical Physics Letters. 32: 513-516. DOI: 10.1016/0009-2614(75)85228-6  0.555
1974 Fiaux A, Smith DL, Futrell JH. Reaction of CH5 + with C2H2, C2H4, C3H6 and c-C3H6 International Journal of Mass Spectrometry and Ion Physics. 15: 9-21. DOI: 10.1016/0020-7381(74)80082-3  0.5
1974 Smith DL, Futrell JH. A new tandem mass spectrometer for the study of ion-molecule reactions International Journal of Mass Spectrometry and Ion Physics. 14: 171-181. DOI: 10.1016/0020-7381(74)80005-7  0.579
1974 Odom RW, Smith DL, Futrell JH. A new measurement of the SF- 6 autoionization lifetime Chemical Physics Letters. 24: 227-230. DOI: 10.1016/0009-2614(74)85438-2  0.548
1974 Smith DL, Futrell JH. Internal eEnergy effects on the reaction of D+ 3 with NH3 Chemical Physics Letters. 24: 611-616. DOI: 10.1016/0009-2614(74)80195-8  0.528
1973 Smith DL, Futrell JH. Ion-molecule reactions in the CO2/H2 system by ion cyclotron resonance International Journal of Mass Spectrometry and Ion Physics. 10: 405-418. DOI: 10.1016/0020-7381(73)83017-7  0.555
1971 Smith DL, Kevan L. Total and Dissociative Charge Transfer of Positive Ions with Perfluoroalkanes Studied by Mass Spectrometry The Journal of Chemical Physics. 55: 2290-2295. DOI: 10.1063/1.1676407  0.409
1971 SMITH DL, KEVAN L. ChemInform Abstract: GESAMT-LADUNGSUEBERTRAGUNGS-QUERSCHNITTE IN MOLEKUELSYST. Chemischer Informationsdienst. Organische Chemie. 2: no-no. DOI: 10.1002/Chin.197130072  0.318
1970 Smith DL, Kevan L. A new single-stage mass spectrometric method for studying charge transfer reactions International Journal of Mass Spectrometry and Ion Physics. 5: 1-10. DOI: 10.1016/0020-7381(70)87001-2  0.321
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