☰

Benjamin M. Bolker - Publications

Affiliations: 
1999-2010 Biology University of Florida, Gainesville, Gainesville, FL, United States 
 2010- Biology, Mathematics & Statistics McMaster University, Hamilton, ON, Canada 
Area:
Theoretical Ecology
Website:
http://www.math.mcmaster.ca/bolker
Tree Info Similar researchers PubMed Report error

89 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Park SW, Bolker BM, Funk S, Metcalf CJE, Weitz JS, Grenfell BT, Dushoff J. The importance of the generation interval in investigating dynamics and control of new SARS-CoV-2 variants. Journal of the Royal Society, Interface. 19: 20220173. PMID 35702867 DOI: 10.1098/rsif.2022.0173  0.437
2021 Park SW, Sun K, Champredon D, Li M, Bolker BM, Earn DJD, Weitz JS, Grenfell BT, Dushoff J. Forward-looking serial intervals correctly link epidemic growth to reproduction numbers. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33361331 DOI: 10.1073/pnas.2011548118  0.436
2020 Park SW, Bolker BM, Champredon D, Earn DJD, Li M, Weitz JS, Grenfell BT, Dushoff J. Reconciling early-outbreak estimates of the basic reproductive number and its uncertainty: framework and applications to the novel coronavirus (SARS-CoV-2) outbreak. Journal of the Royal Society, Interface. 17: 20200144. PMID 32693748 DOI: 10.1098/Rsif.2020.0144  0.536
2020 Park SW, Bolker BM. A Note on Observation Processes in Epidemic Models. Bulletin of Mathematical Biology. 82: 37. PMID 32146583 DOI: 10.1007/S11538-020-00713-2  0.308
2020 Karelus DL, McCown JW, Scheick BK, van de Kerk M, Bolker BM, Oli MK. Corrigendum to: Incorporating movement patterns to discern habitat selection: black bears as a case study Wildlife Research. 47: 359. DOI: 10.1071/Wr17151_Co  0.322
2019 Kain MP, Bolker BM. Predicting West Nile virus transmission in North American bird communities using phylogenetic mixed effects models and eBird citizen science data. Parasites & Vectors. 12: 395. PMID 31395085 DOI: 10.1186/S13071-019-3656-8  0.348
2019 Brooks ME, Kristensen K, Darrigo MR, Rubim P, Uriarte M, Bruna E, Bolker BM. Statistical modeling of patterns in annual reproductive rates. Ecology. e02706. PMID 30916779 DOI: 10.1002/Ecy.2706  0.763
2019 Karelus DL, McCown JW, Scheick BK, van de Kerk M, Bolker BM, Oli MK. Incorporating movement patterns to discern habitat selection: black bears as a case study Wildlife Research. 46: 76. DOI: 10.1071/Wr17151  0.322
2018 Park SW, Dushoff J, Earn DJD, Poinar H, Bolker BM. Human ectoparasite transmission of the plague during the Second Pandemic is only weakly supported by proposed mathematical models. Proceedings of the National Academy of Sciences of the United States of America. PMID 30076235 DOI: 10.1073/Pnas.1809775115  0.312
2018 Li M, Dushoff J, Bolker BM. Fitting mechanistic epidemic models to data: A comparison of simple Markov chain Monte Carlo approaches. Statistical Methods in Medical Research. 27: 1956-1967. PMID 29846150 DOI: 10.1177/0962280217747054  0.36
2017 Park SW, Bolker BM. Effects of contact structure on the transient evolution of HIV virulence. Plos Computational Biology. 13: e1005453. PMID 28362805 DOI: 10.1371/Journal.Pcbi.1005453  0.354
2017 Champredon D, Li M, Bolker BM, Dushoff J. Two approaches to forecast Ebola synthetic epidemics. Epidemics. PMID 28325495 DOI: 10.1016/J.Epidem.2017.02.011  0.321
2017 Li M, Bolker BM. Incorporating periodic variability in hidden Markov models for animal movement. Movement Ecology. 5: 1. PMID 28149522 DOI: 10.1186/S40462-016-0093-6  0.326
2017 Brooks M, Kristensen K, Benthem K, Magnusson A, Berg C, Nielsen A, Skaug H, Mächler M, Bolker B. glmmTMB Balances Speed and Flexibility Among Packages for Zero-inflated Generalized Linear Mixed Modeling The R Journal. 9: 378. DOI: 10.32614/Rj-2017-066  0.356
2016 González EJ, Martorell C, Bolker BM. Inverse estimation of integral projection model parameters using time series of population‐level data Methods in Ecology and Evolution. 7: 147-156. DOI: 10.1111/2041-210X.12519  0.411
2016 Stier AC, Bolker BM, Osenberg CW. Using rarefaction to isolate the effects of patch size and sampling effort on beta diversity Ecosphere. 7. DOI: 10.1002/Ecs2.1612  0.719
2015 Birch M, Bolker BM. Evolutionary Stability of Minimal Mutation Rates in an Evo-epidemiological Model. Bulletin of Mathematical Biology. PMID 26507879 DOI: 10.1007/S11538-015-0112-6  0.31
2015 Bates D, Mächler M, Bolker BM, Walker SC. Fitting linear mixed-effects models using lme4 Journal of Statistical Software. 67. DOI: 10.18637/Jss.V067.I01  0.328
2014 Earn DJ, Andrews PW, Bolker BM. Population-level effects of suppressing fever. Proceedings. Biological Sciences / the Royal Society. 281: 20132570. PMID 24452021 DOI: 10.1098/Rspb.2013.2570  0.345
2014 Ma J, Dushoff J, Bolker BM, Earn DJ. Estimating initial epidemic growth rates. Bulletin of Mathematical Biology. 76: 245-60. PMID 24272389 DOI: 10.1007/S11538-013-9918-2  0.375
2014 Cogliati KM, Mistakidis AF, Marentette JR, Lau A, Bolker BM, Neff BD, Balshine S. Comparing population level sexual selection in a species with alternative reproductive tactics Behavioral Ecology. 25: 1524-1533. DOI: 10.1093/Beheco/Aru147  0.315
2014 Ovaskainen O, Finkelshtein D, Kutoviy O, Cornell S, Bolker B, Kondratiev Y. A general mathematical framework for the analysis of spatiotemporal point processes Theoretical Ecology. 7: 101-113. DOI: 10.1007/S12080-013-0202-8  0.319
2014 McCallum ES, Charney RE, Marenette JR, Young JAM, Koops MA, Earn DJD, Bolker BM, Balshine S. Persistence of an invasive fish (Neogobius melanostomus) in a contaminated ecosystem Biological Invasions. 16: 2449-2461. DOI: 10.1007/S10530-014-0677-2  0.336
2013 Brooks ME, McCoy MW, Bolker BM. A method for detecting positive growth autocorrelation without marking individuals. Plos One. 8: e76389. PMID 24204620 DOI: 10.1371/Journal.Pone.0076389  0.752
2013 Pasch B, Bolker BM, Phelps SM. Interspecific dominance via vocal interactions mediates altitudinal zonation in neotropical singing mice. The American Naturalist. 182: E161-73. PMID 24107377 DOI: 10.1086/673263  0.305
2013 Stier AC, Geange SW, Hanson KM, Bolker BM. Predator density and timing of arrival affect reef fish community assembly. Ecology. 94: 1057-68. PMID 23858646 DOI: 10.1890/11-1983.1  0.665
2013 Stier AC, Geange SW, Bolker BM. Predator density and competition modify the benefits of group formation in a shoaling reef fish Oikos. 122: 171-178. DOI: 10.1111/J.1600-0706.2012.20726.X  0.67
2013 Bolker BM, Gardner B, Maunder M, Berg CW, Brooks M, Comita L, Crone E, Cubaynes S, Davies T, de Valpine P, Ford J, Gimenez O, Kéry M, Kim EJ, Lennert-Cody C, et al. Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS Methods in Ecology and Evolution. 4: 501-512. DOI: 10.1111/2041-210X.12044  0.351
2013 Biesinger Z, Bolker BM, Marcinek D, Grothues TM, Dobarro JA, Lindberg WJ. Testing an autonomous acoustic telemetry positioning system for fine-scale space use in marine animals Journal of Experimental Marine Biology and Ecology. 448: 46-56. DOI: 10.1016/J.Jembe.2013.06.007  0.301
2012 Poulsen JR, Clark CJ, Bolker BM. Experimental manipulation of seed shadows of an Afrotropical tree determines drivers of recruitment. Ecology. 93: 500-10. PMID 22624205 DOI: 10.1890/10-2430.1  0.324
2012 McKeon CS, Stier AC, McIlroy SE, Bolker BM. Multiple defender effects: synergistic coral defense by mutualist crustaceans. Oecologia. 169: 1095-103. PMID 22374368 DOI: 10.1007/S00442-012-2275-2  0.653
2012 Hostetler JA, Onorato DP, Bolker BM, Johnson WE, O'Brien SJ, Jansen D, Oli MK. Does genetic introgression improve female reproductive performance? A test on the endangered Florida panther. Oecologia. 168: 289-300. PMID 21805300 DOI: 10.1007/S00442-011-2083-0  0.326
2012 Brando PM, Nepstad DC, Balch JK, Bolker B, Christman MC, Coe M, Putz FE. Fire-induced tree mortality in a neotropical forest: The roles of bark traits, tree size, wood density and fire behavior Global Change Biology. 18: 630-641. DOI: 10.1111/J.1365-2486.2011.02533.X  0.316
2011 Wayne ML, Blohm GM, Brooks ME, Regan KL, Brown BY, Barfield M, Holt RD, Bolker BM. The prevalence and persistence of sigma virus, a biparentally transmitted parasite of Drosophila melanogaster. Evolutionary Ecology Research. 13: 323-345. PMID 28217032  0.725
2011 Poulsen JR, Clark CJ, Bolker BM. Decoupling the effects of logging and hunting on an afrotropical animal community. Ecological Applications : a Publication of the Ecological Society of America. 21: 1819-36. PMID 21830721 DOI: 10.1890/10-1083.1  0.339
2011 McCoy MW, Bolker BM, Warkentin KM, Vonesh JR. Predicting predation through prey ontogeny using size-dependent functional response models. The American Naturalist. 177: 752-66. PMID 21597252 DOI: 10.1086/659950  0.349
2011 Biesinger Z, Bolker BM, Lindberg WJ. Predicting local population distributions around a central shelter based on a predation risk-growth trade-off Ecological Modelling. 222: 1448-1455. DOI: 10.1016/J.Ecolmodel.2011.02.009  0.397
2010 Trager MD, Bhotika S, Hostetler JA, Andrade GV, Rodriguez-Cabal MA, McKeon CS, Osenberg CW, Bolker BM. Benefits for plants in ant-plant protective mutualisms: a meta-analysis. Plos One. 5: e14308. PMID 21203550 DOI: 10.1371/Journal.Pone.0014308  0.59
2010 Lomáscolo SB, Levey DJ, Kimball RT, Bolker BM, Alborn HT. Dispersers shape fruit diversity in Ficus (Moraceae). Proceedings of the National Academy of Sciences of the United States of America. 107: 14668-72. PMID 20679219 DOI: 10.1073/Pnas.1008773107  0.343
2010 Vuilleumier S, Bolker BM, Lévêque O. Effects of colonization asymmetries on metapopulation persistence. Theoretical Population Biology. 78: 225-38. PMID 20609370 DOI: 10.1016/J.Tpb.2010.06.007  0.334
2010 Bolker BM, Nanda A, Shah D. Transient virulence of emerging pathogens. Journal of the Royal Society, Interface / the Royal Society. 7: 811-22. PMID 19864267 DOI: 10.1098/Rsif.2009.0384  0.333
2009 Holdo RM, Sinclair AR, Dobson AP, Metzger KL, Bolker BM, Ritchie ME, Holt RD. A disease-mediated trophic cascade in the Serengeti and its implications for ecosystem C. Plos Biology. 7: e1000210. PMID 19787022 DOI: 10.1371/Journal.Pbio.1000210  0.322
2009 Ozgul A, Oli MK, Bolker BM, Perez-Heydrich C. Upper respiratory tract disease, force of infection, and effects on survival of gopher tortoises. Ecological Applications : a Publication of the Ecological Society of America. 19: 786-98. PMID 19425439 DOI: 10.1890/08-0219.1  0.333
2009 Bolker BM, Brooks ME, Clark CJ, Geange SW, Poulsen JR, Stevens MH, White JS. Generalized linear mixed models: a practical guide for ecology and evolution. Trends in Ecology & Evolution. 24: 127-35. PMID 19185386 DOI: 10.1016/J.Tree.2008.10.008  0.742
2009 Romero C, Bolker BM, Edwards CE. Stem responses to damage: the evolutionary ecology of Quercus species in contrasting fire regimes. The New Phytologist. 182: 261-71. PMID 19140949 DOI: 10.1111/J.1469-8137.2008.02733.X  0.301
2008 Fiske IJ, Bruna EM, Bolker BM. Effects of sample size on estimates of population growth rates calculated with matrix models. Plos One. 3: e3080. PMID 18769483 DOI: 10.1371/Journal.Pone.0003080  0.355
2008 Gruner DS, Smith JE, Seabloom EW, Sandin SA, Ngai JT, Hillebrand H, Harpole WS, Elser JJ, Cleland EE, Bracken ME, Borer ET, Bolker BM. A cross-system synthesis of consumer and nutrient resource control on producer biomass. Ecology Letters. 11: 740-55. PMID 18445030 DOI: 10.1111/J.1461-0248.2008.01192.X  0.345
2008 McCoy MW, Bolker BM. Trait-mediated interactions: influence of prey size, density and experience. The Journal of Animal Ecology. 77: 478-86. PMID 18312336 DOI: 10.1111/J.1365-2656.2008.01372.X  0.333
2008 Levey DJ, Tewksbury JJ, Bolker BM. Modelling long-distance seed dispersal in heterogeneous landscapes Journal of Ecology. 96: 599-608. DOI: 10.1111/J.1365-2745.2008.01401.X  0.364
2007 Poulsen JR, Osenberg CW, Clark CJ, Levey DJ, Bolker BM. Plants as reef fish: fitting the functional form of seedling recruitment. The American Naturalist. 170: 167-83. PMID 17874368 DOI: 10.1086/518945  0.62
2007 Buckley YM, Bolker BM, Rees M. Disturbance, invasion and re-invasion: managing the weed-shaped hole in disturbed ecosystems. Ecology Letters. 10: 809-17. PMID 17663714 DOI: 10.1111/J.1461-0248.2007.01067.X  0.309
2007 Okuyama T, Bolker BM. On quantitative measures of indirect interactions. Ecology Letters. 10: 264-71. PMID 17355565 DOI: 10.1111/J.1461-0248.2007.01019.X  0.606
2007 Bolker BM, Okuyama T, Bjorndal KA, Bolten AB. Incorporating multiple mixed stocks in mixed stock analysis: 'many-to-many' analyses. Molecular Ecology. 16: 685-95. PMID 17284204 DOI: 10.1111/J.1365-294X.2006.03161.X  0.617
2007 Martcheva M, Bolker BM. The impact of the allee effect in dispersal and patch-occupancy age on the dynamics of metapopulations. Bulletin of Mathematical Biology. 69: 135-56. PMID 17028916 DOI: 10.1007/S11538-006-9075-Y  0.327
2007 Allen LJS, Bolker BM, Lous Y, Nevai AL. Asymptotic profiles of the steady states for an SIS epidemic patch model Siam Journal On Applied Mathematics. 67: 1283-1309. DOI: 10.1137/060672522  0.319
2006 Babbitt GA, Kiltie R, Bolker B. Are fluctuating asymmetry studies adequately sampled? Implications of a new model for size distribution American Naturalist. 167: 230-245. PMID 16670983 DOI: 10.1086/498621  0.342
2006 McCoy MW, Bolker BM, Osenberg CW, Miner BG, Vonesh JR. Size correction: comparing morphological traits among populations and environments. Oecologia. 148: 547-54. PMID 16604370 DOI: 10.1007/S00442-006-0403-6  0.622
2006 Tiwari M, Bjorndal KA, Bolten AB, Bolker BM. Evaluation of density-dependent processes and green turtle Chelonia mydas hatchling production at Tortuguero, Costa Rica Marine Ecology Progress Series. 326: 283-293. DOI: 10.3354/Meps326283  0.366
2005 Levey DJ, Bolker BM, Tewksbury JJ, Sargent S, Haddad NM. Effects of landscape corridors on seed dispersal by birds. Science (New York, N.Y.). 309: 146-8. PMID 15994561 DOI: 10.1126/Science.1111479  0.328
2005 Clark CJ, Poulsen JR, Bolker BM, Connor EF, Parker VT. Comparative Seed Shadows Of Bird‐, Monkey‐, And Wind‐Dispersed Trees Ecology. 86: 2684-2694. DOI: 10.1890/04-1325  0.343
2005 Vonesh JR, Bolker BM. Compensatory larval responses shift trade-offs associated with predator-induced hatching plasticity Ecology. 86: 1580-1591. DOI: 10.1890/04-0535  0.341
2005 Okuyama T, Bolker BM. Combining genetic and ecological data to estimate sea turtle origins Ecological Applications. 15: 315-325. DOI: 10.1890/03-5063  0.638
2005 Seabloom EW, Bjørnstad ON, Bolker BM, Reichman OJ. Spatial signature of environmental heterogeneity, dispersal, and competition in successional grasslands Ecological Monographs. 75: 199-214. DOI: 10.1890/03-0841  0.328
2005 De Castro F, Bolker BM. Parasite establishment and host extinction in model communities Oikos. 111: 501-513. DOI: 10.1111/J.1600-0706.2005.14101.X  0.324
2005 Tiwari M, Bjorndal KA, Bolten AB, Bolker BM. Intraspecific application of the mid-domain effect model: Spatial and temporal nest distributions of green turtles, Chelonia mydas, at Tortuguero, Costa Rica Ecology Letters. 8: 918-924. DOI: 10.1111/J.1461-0248.2005.00793.X  0.356
2005 De Castro F, Bolker B. Mechanisms of disease-induced extinction Ecology Letters. 8: 117-126. DOI: 10.1111/J.1461-0248.2004.00693.X  0.359
2004 Bowen BW, Bass AL, Chow SM, Bostrom M, Bjorndal KA, Bolten AB, Okuyama T, Bolker BM, Epperly S, Lacasella E, Shaver D, Dodd M, Hopkins-Murphy SR, Musick JA, Swingle M, et al. Natal homing in juvenile loggerhead turtles (Caretta caretta). Molecular Ecology. 13: 3797-808. PMID 15548292 DOI: 10.1111/J.1365-294X.2004.02356.X  0.589
2004 Brown DH, Bolker BM. The effects of disease dispersal and host clustering on the epidemic threshold in plants. Bulletin of Mathematical Biology. 66: 341-71. PMID 14871569 DOI: 10.1016/J.Bulm.2003.08.006  0.351
2004 Bolker B. A smorgasbord of stochastic dynamics Trends in Ecology & Evolution. 19: 11. DOI: 10.1016/J.Tree.2003.09.011  0.407
2003 Bolker BM. Combining endogenous and exogenous spatial variability in analytical population models. Theoretical Population Biology. 64: 255-70. PMID 14522167 DOI: 10.1016/S0040-5809(03)00090-X  0.373
2003 Bolker BM, Pacala SW, Neuhauser C. Spatial dynamics in model plant communities: what do we really know? The American Naturalist. 162: 135-48. PMID 12858259 DOI: 10.1086/376575  0.373
2003 Bolker B, Okuyama T, Bjorndal K, Bolten A. Sea turtle stock estimation using genetic markers: Accounting for sampling error of rare genotypes Ecological Applications. 13: 763-775. DOI: 10.1890/1051-0761(2003)013[0763:Stseug]2.0.Co;2  0.599
2003 Bolker B, Okuyama T, Bjorndal K, Bolten A. SEA TURTLE STOCK ESTIMATION USING GENETIC MARKERS: ACCOUNTING FOR SAMPLING ERROR OF RARE GENOTYPES Ecological Applications. 13: 763-775. DOI: 10.1890/1051-0761(2003)013[0763:STSEUG]2.0.CO;2  0.5
2003 Bolker B, Holyoak M, K?ivan V, Rowe L, Schmitz O. Connecting theoretical and empirical studies of trait-mediated interactions Ecology. 84: 1101-1114. DOI: 10.1890/0012-9658(2003)084[1101:Ctaeso]2.0.Co;2  0.354
2002 Bolker BM, St. Mary CM, Osenberg CW, Schmitt RJ, Holbrook SJ. Management at a different scale: Marine ornamentals and local processes Bulletin of Marine Science. 70: 733-748.  0.513
2000 Earn DJ, Rohani P, Bolker BM, Grenfell BT. A simple model for complex dynamical transitions in epidemics. Science (New York, N.Y.). 287: 667-70. PMID 10650003 DOI: 10.1126/Science.287.5453.667  0.506
2000 Bjornstad ON, Bolker B. Canonical functions for dispersal-induced synchrony Proceedings of the Royal Society B: Biological Sciences. 267: 1787-1794. DOI: 10.1098/Rspb.2000.1211  0.36
1999 Bolker BM, Pacala SW. Spatial Moment Equations for Plant Competition: Understanding Spatial Strategies and the Advantages of Short Dispersal. The American Naturalist. 153: 575-602. PMID 29585643 DOI: 10.1086/303199  0.316
1999 Bolker BM. Analytic models for the patchy spread of plant disease. Bulletin of Mathematical Biology. 61: 849-74. PMID 17886747 DOI: 10.1006/Bulm.1999.0115  0.325
1998 Bolker BM, Pacala SW, Parton WJ. Linear analysis of soil decomposition: Insights from the Century model Ecological Applications. 8: 425-439. DOI: 10.1890/1051-0761(1998)008[0425:Laosdi]2.0.Co;2  0.331
1997 Bolker BM, Deutschman DH, Hartvigsen G, Smith DL. Individual-based modelling: what is the difference? Trends in Ecology & Evolution. 12: 111. PMID 21237995 DOI: 10.1016/S0169-5347(97)84919-1  0.309
1997 Bolker B, Pacala SW. Using Moment Equations to Understand Stochastically Driven Spatial Pattern Formation in Ecological Systems Theoretical Population Biology. 52: 179-97. PMID 9466960 DOI: 10.1006/Tpbi.1997.1331  0.359
1996 Bolker BM, Grenfell BT. Impact of vaccination on the spatial correlation and persistence of measles dynamics. Proceedings of the National Academy of Sciences of the United States of America. 93: 12648-53. PMID 8901637 DOI: 10.1073/Pnas.93.22.12648  0.511
1995 Bolker B, Grenfell B. Space, persistence and dynamics of measles epidemics Philosophical Transactions of the Royal Society B: Biological Sciences. 348: 309-320. PMID 8577828 DOI: 10.1098/Rstb.1995.0070  0.532
1995 Grenfell BT, Kleczkowski A, Gilligan CA, Bolker BM. Spatial heterogeneity, nonlinear dynamics and chaos in infectious diseases. Statistical Methods in Medical Research. 4: 160-83. PMID 7582203 DOI: 10.1177/096228029500400205  0.536
1995 Bolker BM, Pacala SW, Bazzaz FA, Canham CD, Levin SA. Species diversity and ecosystem response to carbon dioxide fertilization: conclusions from a temperate forest model Global Change Biology. 1: 373-381. DOI: 10.1111/J.1365-2486.1995.Tb00035.X  0.34
1995 Grenfell BT, Bolker BM, Kleczkowski A. Seasonality and extinction in chaotic metapopulations Proceedings of the Royal Society B: Biological Sciences. 259: 97-103. DOI: 10.1098/Rspb.1995.0015  0.567
1993 Bolker B. Chaos and complexity in measles models: A comparative numerical study Mathematical Medicine and Biology-a Journal of the Ima. 10: 83-95. PMID 8370994 DOI: 10.1093/Imammb/10.2.83  0.351
1993 Bolker BM, Grenfell BT. Chaos and biological complexity in measles dynamics. Proceedings. Biological Sciences / the Royal Society. 251: 75-81. PMID 8094567 DOI: 10.1098/Rspb.1993.0011  0.521
Show low-probability matches.