Year |
Citation |
Score |
2024 |
Andreas E, Cummins B, Gedeon T. Quantifying robustness of the gap gene network. Journal of Theoretical Biology. 111720. PMID 38211890 DOI: 10.1016/j.jtbi.2024.111720 |
0.643 |
|
2023 |
Hari K, Duncan W, Ibrahim MA, Jolly MK, Cummins B, Gedeon T. Assessing biological network dynamics: comparing numerical simulations with analytical decomposition of parameter space. Npj Systems Biology and Applications. 9: 29. PMID 37400474 DOI: 10.1038/s41540-023-00289-2 |
0.65 |
|
2023 |
Cummins B, Vrana J, Moseley RC, Eramian H, Deckard A, Fontanarrosa P, Bryce D, Weston M, Zheng G, Nowak J, Motta FC, Eslami M, Johnson KL, Goldman RP, Myers CJ, ... ... Gedeon T, et al. Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop. Synthetic Biology (Oxford, England). 8: ysad005. PMID 37073283 DOI: 10.1093/synbio/ysad005 |
0.56 |
|
2022 |
Cummins B, Motta FC, Moseley RC, Deckard A, Campione S, Gameiro M, Gedeon T, Mischaikow K, Haase SB. Experimental guidance for discovering genetic networks through hypothesis reduction on time series. Plos Computational Biology. 18: e1010145. PMID 36215333 DOI: 10.1371/journal.pcbi.1010145 |
0.627 |
|
2022 |
Crawford-Kahrl P, Nerem RR, Cummins B, Gedeon T. Genetic networks encode secrets of their past. Journal of Theoretical Biology. 541: 111092. PMID 35307408 DOI: 10.1016/j.jtbi.2022.111092 |
0.315 |
|
2021 |
Gameiro M, Gedeon T, Kepley S, Mischaikow K. Rational design of complex phenotype via network models. Plos Computational Biology. 17: e1009189. PMID 34324484 DOI: 10.1371/journal.pcbi.1009189 |
0.368 |
|
2020 |
Smith LM, Motta FC, Chopra G, Moch JK, Nerem RR, Cummins B, Roche KE, Kelliher CM, Leman AR, Harer J, Gedeon T, Waters NC, Haase SB. An intrinsic oscillator drives the blood stage cycle of the malaria parasite . Science (New York, N.Y.). 368: 754-759. PMID 32409472 DOI: 10.1126/Science.Aba4357 |
0.534 |
|
2020 |
Xin Y, Cummins B, Gedeon T. Multistability in the epithelial-mesenchymal transition network. Bmc Bioinformatics. 21: 71. PMID 32093616 DOI: 10.1186/S12859-020-3413-1 |
0.579 |
|
2020 |
Gedeon T. Multi-parameter exploration of dynamics of regulatory networks. Bio Systems. 104113. PMID 32057819 DOI: 10.1016/J.Biosystems.2020.104113 |
0.482 |
|
2020 |
Berry E, Cummins B, Nerem RR, Smith LM, Haase SB, Gedeon T. Using extremal events to characterize noisy time series. Journal of Mathematical Biology. PMID 32008103 DOI: 10.1007/S00285-020-01471-4 |
0.602 |
|
2019 |
Crawford-Kahrl P, Cummins B, Gedeon T. Comparison of Combinatorial Signatures of Global Network Dynamics Generated by Two Classes of ODE Models. Siam Journal On Applied Dynamical Systems. 18: 418-457. PMID 33679257 DOI: 10.1137/18m1163610 |
0.432 |
|
2019 |
Crawford-Kahrl P, Cummins B, Gedeon T. Comparison of Combinatorial Signatures of Global Network Dynamics Generated by Two Classes of ODE Models Siam Journal On Applied Dynamical Systems. 18: 418-457. DOI: 10.1137/18M1163610 |
0.673 |
|
2018 |
Cummins B, Gedeon T, Harker S, Mischaikow K. Model Rejection and Parameter Reduction via Time Series. Siam Journal On Applied Dynamical Systems. 17: 1589-1616. PMID 31762711 DOI: 10.1137/17M1134548 |
0.764 |
|
2018 |
Cummins B, Gedeon T, Harker S, Mischaikow K. DSGRN: Examining the Dynamics of Families of Logical Models. Frontiers in Physiology. 9: 549. PMID 29875674 DOI: 10.3389/Fphys.2018.00549 |
0.787 |
|
2018 |
Huttinga Z, Cummins B, Gedeon T, Mischaikow K. Global dynamics for switching systems and their extensions by linear differential equations. Physica D. Nonlinear Phenomena. 367: 19-37. PMID 29867284 DOI: 10.1016/J.Physd.2017.11.003 |
0.64 |
|
2018 |
Gedeon T, Cummins B, Harker S, Mischaikow K. Identifying robust hysteresis in networks. Plos Computational Biology. 14: e1006121. PMID 29684007 DOI: 10.1371/Journal.Pcbi.1006121 |
0.774 |
|
2017 |
Gedeon T, Harker S, Kokubu H, Mischaikow K, Oka H. Global Dynamics for Steep Nonlinearities in Two Dimensions. Physica D. Nonlinear Phenomena. 339: 18-38. PMID 28392611 DOI: 10.1016/J.Physd.2016.08.006 |
0.788 |
|
2016 |
Cummins B, Gedeon T, Harker S, Mischaikow K, Mok K. Combinatorial representation of parameter space for switching networks. Siam Journal On Applied Dynamical Systems. 15: 2176-2212. PMID 30774565 DOI: 10.1137/15M1052743 |
0.788 |
|
2016 |
Gedeon T, Pernarowski M, Wilander A. Cyclic Feedback Systems with Quorum Sensing Coupling. Bulletin of Mathematical Biology. PMID 27328980 DOI: 10.1007/S11538-016-0187-8 |
0.373 |
|
2016 |
Fan G, Cummins B, Gedeon T. Convergence Properties of Posttranslationally Modified Protein-Protein Switching Networks with Fast Decay Rates. Bulletin of Mathematical Biology. PMID 27271120 DOI: 10.1007/S11538-016-0175-Z |
0.627 |
|
2015 |
Cummins B, Gedeon T, Spendlove K. On the efficacy of state space reconstruction methods in determining causality Siam Journal On Applied Dynamical Systems. 14: 335-381. DOI: 10.1137/130946344 |
0.628 |
|
2013 |
Spendlove K, Berwald J, Gedeon T. Predicting high-codimension critical transitions in dynamical systems using active learning Mathematical and Computer Modelling of Dynamical Systems. 19: 557-574. DOI: 10.1080/13873954.2013.801866 |
0.77 |
|
2012 |
Heys JJ, Rajaraman PK, Gedeon T, Miller JP. A model of filiform hair distribution on the cricket cercus. Plos One. 7: e46588. PMID 23056357 DOI: 10.1371/Journal.Pone.0046588 |
0.303 |
|
2012 |
Gedeon T, Cummins G, Heys JJ. Effect of model selection on prediction of periodic behavior in gene regulatory networks. Bulletin of Mathematical Biology. 74: 1706-26. PMID 22610797 DOI: 10.1007/S11538-012-9732-2 |
0.438 |
|
2012 |
Gedeon T, Parker AE, Dimitrov AG. The mathematical structure of information bottleneck methods Entropy. 14: 456-479. DOI: 10.3390/E14030456 |
0.556 |
|
2012 |
Berwald J, Gedeon T, Sheppard J. Using machine learning to predict catastrophes in dynamical systems Journal of Computational and Applied Mathematics. 236: 2235-2245. DOI: 10.1016/J.Cam.2011.11.006 |
0.768 |
|
2012 |
Cummins B, Gedeon T. Assessing the mechanical response of groups of arthropod filiform flow sensors Frontiers in Sensing: From Biology to Engineering. 2147483647: 239-250. DOI: 10.1007/978-3-211-99749-9_16 |
0.517 |
|
2010 |
Gedeon T. Oscillations in Monotone Systems with a Negative Feedback Siam Journal On Applied Dynamical Systems. 9: 84-112. DOI: 10.1137/090746653 |
0.308 |
|
2010 |
Parker AE, Dimitrov AG, Gedeon T. Symmetry breaking in soft clustering decoding of neural codes Ieee Transactions On Information Theory. 56: 901-927. DOI: 10.1109/Tit.2009.2037045 |
0.546 |
|
2009 |
Gedeon T, Hines G. Multi-valued characteristics and Morse decompositions Journal of Differential Equations. 247: 1013-1042. DOI: 10.1016/J.Jde.2009.04.019 |
0.361 |
|
2008 |
Gedeon T, Parker AE, Campion C, Aldworth Z. Annealing and the Normalized N-Cut. Pattern Recognition. 41: 592-606. PMID 19190710 DOI: 10.1016/J.Patcog.2007.06.014 |
0.516 |
|
2008 |
Gedeon T, Mischaikow K, Patterson K, Traldi E. Binding cooperativity in phage lambda is not sufficient to produce an effective switch. Biophysical Journal. 94: 3384-92. PMID 18400951 DOI: 10.1529/Biophysj.107.121756 |
0.644 |
|
2008 |
Heys JJ, Gedeon T, Knott BC, Kim Y. Modeling arthropod filiform hair motion using the penalty immersed boundary method. Journal of Biomechanics. 41: 977-84. PMID 18255073 DOI: 10.1016/J.Jbiomech.2007.12.015 |
0.326 |
|
2008 |
Cummins B, Gedeon T. A refined model of viscous coupling between filiform hairs in the cricket cercal system Asme International Mechanical Engineering Congress and Exposition, Proceedings. 8: 1301-1309. DOI: 10.1115/IMECE2007-41075 |
0.535 |
|
2007 |
Gedeon T, Sontag ED. Oscillations in multi-stable monotone systems with slowly varying feedback. Journal of Differential Equations. 239: 273-295. PMID 18704155 DOI: 10.1016/J.Jde.2007.05.029 |
0.386 |
|
2007 |
Boczko E, Gedeon T, Mischaikow K. Dynamics of a simple regulatory switch. Journal of Mathematical Biology. 55: 679-719. PMID 17622532 DOI: 10.1007/S00285-007-0102-X |
0.364 |
|
2007 |
Cummins B, Gedeon T, Klapper I, Cortez R. Interaction between arthropod filiform hairs in a fluid environment. Journal of Theoretical Biology. 247: 266-80. PMID 17434184 DOI: 10.1016/J.Jtbi.2007.02.003 |
0.563 |
|
2007 |
Gedeon T, Arathorn D. Convergence of map seeking circuits Journal of Mathematical Imaging and Vision. 29: 235-248. DOI: 10.1007/S10851-007-0028-3 |
0.349 |
|
2007 |
Harker SR, Vogel CR, Gedeon T. Analysis of constrained optimization variants of the map-seeking circuit algorithm Journal of Mathematical Imaging and Vision. 29: 49-62. DOI: 10.1007/S10851-007-0024-7 |
0.743 |
|
2006 |
Gedeon T, Kokubu H, Mischaikow K, Oka H. The Conley index for fast-slow systems II: Multidimensional slow variable Journal of Differential Equations. 225: 242-307. DOI: 10.1016/J.Jde.2005.11.006 |
0.3 |
|
2005 |
Boczko EM, Cooper TG, Gedeon T, Mischaikow K, Murdock DG, Pratap S, Wells KS. Structure theorems and the dynamics of nitrogen catabolite repression in yeast. Proceedings of the National Academy of Sciences of the United States of America. 102: 5647-52. PMID 15814615 DOI: 10.1073/Pnas.0501339102 |
0.377 |
|
2004 |
Gedeon T, Holzer M. Phase locking in integrate-and-fire models with refractory periods and modulation. Journal of Mathematical Biology. 49: 577-603. PMID 15565447 DOI: 10.1007/S00285-004-0268-4 |
0.305 |
|
2004 |
Parker AE, Gedeon T. Bifurcation Structure of a Class of SN-invariant Constrained Optimization Problems Journal of Dynamics and Differential Equations. 16: 629-678. DOI: 10.1007/S10884-004-6112-0 |
0.524 |
|
2003 |
Dimitrov AG, Miller JP, Gedeon T, Aldworth Z, Parker AE. Analysis of neural coding through quantization with an information-based distortion measure. Network (Bristol, England). 14: 151-76. PMID 12613556 DOI: 10.1080/Net.14.1.151.176 |
0.516 |
|
2003 |
Gedeon T. Attractors in continuous –time switching networks Communications On Pure and Applied Analysis. 2: 187-209. DOI: 10.3934/Cpaa.2003.2.187 |
0.378 |
|
2003 |
Gedeon T, Holzer M, Pernarowski M. Attractor reconstruction from interspike intervals is incomplete Physica D: Nonlinear Phenomena. 178: 149-172. DOI: 10.1016/S0167-2789(03)00003-4 |
0.309 |
|
2003 |
Parker AE, Gedeon T, Dimitrov AG. Annealing and the rate distortion problem Advances in Neural Information Processing Systems. |
0.47 |
|
2002 |
Gedeon T, Kokubu H, Mischaikow K, Oka H. Chaotic Solutions in Slowly Varying Perturbations of Hamiltonian Systems with Applications to Shallow Water Sloshing Journal of Dynamics and Differential Equations. 14: 63-84. DOI: 10.1023/A:1012967211737 |
0.319 |
|
2000 |
Gedeon T. Global dynamics of neural nets with infinite gain Physica D: Nonlinear Phenomena. 146: 200-212. DOI: 10.1016/S0167-2789(00)00129-9 |
0.419 |
|
1999 |
Gedeon T. Additive neural networks and periodic patterns. Neural Networks : the Official Journal of the International Neural Network Society. 12: 617-626. PMID 12662673 DOI: 10.1016/S0893-6080(99)00023-4 |
0.305 |
|
1998 |
Fiedler B, Gedeon T. A class of convergent neural network dynamics Physica D: Nonlinear Phenomena. 111: 288-294. |
0.309 |
|
1995 |
Gedeon T, Mischaikow K. Structure of the global attractor of cyclic feedback systems Journal of Dynamics and Differential Equations. 7: 141-190. DOI: 10.1007/Bf02218817 |
0.413 |
|
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