Gregory M. Bonito, Ph.D. - Publications

Affiliations: 
Biology Duke University, Durham, NC 
Area:
Fungal evolution and phylogenetics

94 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Mathieu D, Bryson AE, Hamberger B, Singan V, Keymanesh K, Wang M, Barry K, Mondo S, Pangilinan J, Koriabine M, Grigoriev IV, Bonito G, Hamberger B. Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long-standing interaction among land plants and fungi. The Plant Journal : For Cell and Molecular Biology. PMID 38265362 DOI: 10.1111/tpj.16605  0.307
2023 Cailleau G, Hanson BT, Cravero M, Zhioua S, Hilpish P, Ruiz C, Robinson AJ, Kelliher JM, Morales D, Gallegos-Graves V, Bonito G, Chain PSG, Bindschedler S, Junier P. Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between with spp. Frontiers in Fungal Biology. 4: 1285531. PMID 38155707 DOI: 10.3389/ffunb.2023.1285531  0.32
2023 Lartey I, Benucci GMN, Marsh TL, Bonito GM, Melakeberhan H. Characterizing microbial communities associated with northern root-knot nematode () occurrence and soil health. Frontiers in Microbiology. 14: 1267008. PMID 38029134 DOI: 10.3389/fmicb.2023.1267008  0.318
2023 Mikryukov V, Dulya O, Zizka A, Bahram M, Hagh-Doust N, Anslan S, Prylutskyi O, Delgado-Baquerizo M, Maestre FT, Nilsson H, Pärn J, Öpik M, Moora M, Zobel M, Espenberg M, ... ... Bonito G, et al. Connecting the multiple dimensions of global soil fungal diversity. Science Advances. 9: eadj8016. PMID 38019923 DOI: 10.1126/sciadv.adj8016  0.656
2023 Chou MY, Andersen TB, Mechan Llontop ME, Beculheimer N, Sow A, Moreno N, Shade A, Hamberger B, Bonito G. Terpenes modulate bacterial and fungal growth and sorghum rhizobiome communities. Microbiology Spectrum. 11: e0133223. PMID 37772854 DOI: 10.1128/spectrum.01332-23  0.349
2023 Amses K, Desiró A, Bryson A, Grigoriev I, Mondo S, Lipzen A, LaButti K, Riley R, Singan V, Salazar-Hamm P, King J, Ballou E, Pawlowska T, Adeleke R, Bonito G, et al. Convergent reductive evolution and host adaptation in Mycoavidus bacterial endosymbionts of Mortierellaceae fungi. Fungal Genetics and Biology : Fg & B. 103838. PMID 37716699 DOI: 10.1016/j.fgb.2023.103838  0.731
2023 Benucci GMN, Toosi ER, Yang F, Marsh TL, Bonito GM, Kravchenko A. The microbiome structure of decomposing plant leaves in soil depends on plant species, soil pore sizes, and soil moisture content. Frontiers in Microbiology. 14: 1172862. PMID 37645221 DOI: 10.3389/fmicb.2023.1172862  0.351
2023 Gryganskyi AP, Golan J, Muszewska A, Idnurm A, Dolatabadi S, Mondo SJ, Kutovenko VB, Kutovenko VO, Gajdeczka MT, Anishchenko IM, Pawlowska J, Tran NV, Ebersberger I, Voigt K, Wang Y, ... ... Bonito G, et al. Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned? Microorganisms. 11. PMID 37513002 DOI: 10.3390/microorganisms11071830  0.678
2023 Garcia-Barreda S, Marco P, Bonito G, Parladé J, Sánchez S, González V, Larena I, Benucci GMN. Interannual dynamics of Tuber melanosporum and fungal communities in productive black truffle orchards amended with truffle nests. Fems Microbiology Ecology. 99. PMID 37481697 DOI: 10.1093/femsec/fiad084  0.349
2023 Bell-Dereske LP, Benucci GMN, da Costa PB, Bonito G, Friesen ML, Tiemann LK, Evans SE. Regional biogeography versus intra-annual dynamics of the root and soil microbiome. Environmental Microbiome. 18: 50. PMID 37287059 DOI: 10.1186/s40793-023-00504-x  0.373
2022 Desirò A, Takashima Y, Bonito G, Nishizawa T, Narisawa K, Bonfante P. Investigating Endobacteria that Thrive Within Mucoromycota. Methods in Molecular Biology (Clifton, N.J.). 2605: 293-323. PMID 36520400 DOI: 10.1007/978-1-0716-2871-3_15  0.325
2022 Benucci GMN, Beschoren da Costa P, Wang X, Bonito G. Stochastic and deterministic processes shape bioenergy crop microbiomes along a vertical soil niche. Environmental Microbiology. PMID 36354216 DOI: 10.1111/1462-2920.16269  0.35
2022 Tedersoo L, Mikryukov V, Zizka A, Bahram M, Hagh-Doust N, Anslan S, Prylutskyi O, Delgado-Baquerizo M, Maestre FT, Pärn J, Öpik M, Moora M, Zobel M, Espenberg M, Mander Ü, ... ... Bonito G, et al. Global patterns in endemicity and vulnerability of soil fungi. Global Change Biology. PMID 36056462 DOI: 10.1111/gcb.16398  0.64
2022 Beschoren da Costa P, Benucci GMN, Chou MY, Van Wyk J, Chretien M, Bonito G. Soil Origin and Plant Genotype Modulate Switchgrass Aboveground Productivity and Root Microbiome Assembly. Mbio. e0007922. PMID 35384699 DOI: 10.1128/mbio.00079-22  0.78
2022 Liber JA, Minier DH, Stouffer-Hopkins A, Van Wyk J, Longley R, Bonito G. Maple and hickory leaf litter fungal communities reflect pre-senescent leaf communities. Peerj. 10: e12701. PMID 35127279 DOI: 10.7717/peerj.12701  0.771
2021 Liao HL, Bonito G, Hameed K, Wu SH, Chen KH, Labbé J, Schadt CW, Tuskan GA, Martin F, Kuo A, Barry K, Grigoriev IV, Vilgalys R. Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi. Frontiers in Microbiology. 12: 680267. PMID 34803937 DOI: 10.3389/fmicb.2021.680267  0.599
2021 Dissanayake AA, Mills GL, Bonito G, Rennick B, Nair MG. Chemical Composition and Anti-Inflammatory and Antioxidant Activities of Extracts from Cultivated Morel Mushrooms, Species of Genus Morchella (Ascomycota). International Journal of Medicinal Mushrooms. 23: 73-83. PMID 34591400 DOI: 10.1615/IntJMedMushrooms.2021039297  0.718
2021 Orlofsky E, Zabari L, Bonito G, Masaphy S. Changes in soil bacteria functional ecology associated with Morchella rufobrunnea fruiting in a natural habitat. Environmental Microbiology. 23: 6651-6662. PMID 34327796 DOI: 10.1111/1462-2920.15692  0.303
2021 Grupe AC, Jusino MA, Mujic AB, Spakes-Richter B, Bonito G, Brenneman T, Smith ME. Effects of Field Fumigation and Inoculation With the Pecan Truffle () on the Fungal Community of Pecan () Seedlings Over 5 Years. Frontiers in Microbiology. 12: 661515. PMID 34054763 DOI: 10.3389/fmicb.2021.661515  0.336
2020 Mei Y, Liu CY, Li SH, Guerin-Laguette A, Xiao YJ, Tang P, Wan SP, Bonito G, Wang Y. , a new edible bolete from China, is associated with insects and plants. Mycologia. 1-10. PMID 33337985 DOI: 10.1080/00275514.2020.1816781  0.304
2020 Miyauchi S, Kiss E, Kuo A, Drula E, Kohler A, Sánchez-García M, Morin E, Andreopoulos B, Barry KW, Bonito G, Buée M, Carver A, Chen C, Cichocki N, Clum A, et al. Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Communications. 11: 5125. PMID 33046698 DOI: 10.1038/s41467-020-18795-w  0.718
2020 Myers JM, Bonds AE, Clemons RA, Thapa NA, Simmons DR, Carter-House D, Ortanez J, Liu P, Miralles-Durán A, Desirò A, Longcore JE, Bonito G, Stajich JE, Spatafora JW, Chang Y, et al. Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses. Mbio. 11. PMID 32900807 DOI: 10.1128/Mbio.02027-20  0.688
2020 Benucci GMN, Rennick B, Bonito G. Patient propagules: Do soil archives preserve the legacy of fungal and prokaryotic communities? Plos One. 15: e0237368. PMID 32780777 DOI: 10.1371/Journal.Pone.0237368  0.755
2020 Longley R, Noel ZA, Benucci GMN, Chilvers MI, Trail F, Bonito G. Crop Management Impacts the Soybean () Microbiome. Frontiers in Microbiology. 11: 1116. PMID 32582080 DOI: 10.3389/Fmicb.2020.01116  0.396
2020 Longley R, Benucci GMN, Mills G, Bonito G. Fungal and bacterial community dynamics in substrates during the cultivation of morels (Morchella rufobrunnea) indoors. Fems Microbiology Letters. 366. PMID 31603508 DOI: 10.1093/Femsle/Fnz215  0.417
2020 Zhang K, Bonito G, Hsu C, Hameed K, Vilgalys R, Liao H. Mortierella elongata Increases Plant Biomass among Non-Leguminous Crop Species Agronomy. 10: 754. DOI: 10.3390/Agronomy10050754  0.604
2020 Song G, Chen Q, Callow P, Mandujano M, Han X, Cuenca B, Bonito G, Medina-Mora C, Fulbright DW, Guyer DE. Efficient Micropropagation of Chestnut Hybrids (Castanea spp.) Using Modified Woody Plant Medium and Zeatin Riboside Horticultural Plant Journal. DOI: 10.1016/J.Hpj.2020.09.006  0.392
2019 Benucci GMN, Burnard D, Shepherd LD, Bonito G, Munkacsi AB. Evidence for Co-evolutionary History of Early Diverging Lycopodiaceae Plants With Fungi. Frontiers in Microbiology. 10: 2944. PMID 32010072 DOI: 10.3389/Fmicb.2019.02944  0.497
2019 Uehling JK, Entler MR, Meredith HR, Millet LJ, Timm CM, Aufrecht JA, Bonito GM, Engle NL, Labbé JL, Doktycz MJ, Retterer ST, Spatafora JW, Stajich JE, Tschaplinski TJ, Vilgalys RJ. Microfluidics and Metabolomics Reveal Symbiotic Bacterial-Fungal Interactions Between and Include Metabolite Exchange. Frontiers in Microbiology. 10: 2163. PMID 31632357 DOI: 10.3389/Fmicb.2019.02163  0.767
2019 Benucci GMN, Longley R, Zhang P, Zhao Q, Bonito G, Yu F. Microbial communities associated with the black morel cultivated in greenhouses. Peerj. 7: e7744. PMID 31579614 DOI: 10.7717/Peerj.7744  0.459
2019 Du ZY, Zienkiewicz K, Vande Pol N, Ostrom NE, Benning C, Bonito GM. Algal-fungal symbiosis leads to photosynthetic mycelium. Elife. 8. PMID 31307571 DOI: 10.7554/Elife.47815  0.411
2019 Millet LJ, Aufrecht J, Labbé J, Uehling J, Vilgalys R, Estes ML, Miquel Guennoc C, Deveau A, Olsson S, Bonito G, Doktycz MJ, Retterer ST. Increasing access to microfluidics for studying fungi and other branched biological structures. Fungal Biology and Biotechnology. 6: 1. PMID 31198578 DOI: 10.1186/s40694-019-0071-z  0.745
2019 Bonito G, Benucci GMN, Hameed K, Weighill D, Jones P, Chen KH, Jacobson D, Schadt C, Vilgalys R. Fungal-Bacterial Networks in the Rhizobiome Are Impacted by Soil Properties and Host Genotype. Frontiers in Microbiology. 10: 481. PMID 30984119 DOI: 10.3389/Fmicb.2019.00481  0.665
2019 Wang X, Peng J, Sun L, Bonito G, Wang J, Cui W, Fu Y, Li Y. Genome Sequencing Illustrates the Genetic Basis of the Pharmacological Properties of . Genes. 10. PMID 30832255 DOI: 10.3390/Genes10030188  0.321
2019 Liao HL, Bonito G, Rojas JA, Hameed K, Wu S, Schadt CW, Labbe JL, Tuskan G, Martin FM, Grigoriev IV, Vilgalys R. Fungal endophytes of Populus trichocarpa alter host phenotype, gene expression and rhizobiome composition. Molecular Plant-Microbe Interactions : Mpmi. PMID 30699306 DOI: 10.1094/Mpmi-05-18-0133-R  0.64
2019 Khmelnitsky O, Davoodian N, Singh P, Raspé O, Lee SML, Fechner N, Bonito G, Lebel T, Halling RE. Ionosporus: a new genus for Boletus longipes (Boletaceae), with a new species, I. australis, from Australia Mycological Progress. 18: 439-451. DOI: 10.1007/S11557-018-01463-1  0.327
2018 Chang Y, Desirò A, Na H, Sandor L, Lipzen A, Clum A, Barry K, Grigoriev IV, Martin FM, Stajich JE, Smith ME, Bonito G, Spatafora JW. Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota. The New Phytologist. PMID 30485448 DOI: 10.1111/Nph.15613  0.399
2018 Benucci GMN, Bonito V, Bonito G. Fungal, Bacterial, and Archaeal Diversity in Soils Beneath Native and Introduced Plants in Fiji, South Pacific. Microbial Ecology. 78: 136-146. PMID 30288545 DOI: 10.1007/S00248-018-1266-1  0.527
2018 Grupe AC, Sulzbacher MA, Grebenc T, Healy R, Bonito G, Smith ME. Tuber brennemanii and Tuber floridanum: Two new Tuber species are among the most commonly detected ectomycorrhizal taxa within commercial pecan (Carya illinoinensis) orchards. Mycologia. 1-11. PMID 30130456 DOI: 10.1080/00275514.2018.1490121  0.485
2018 Misztal PK, Lymperopoulou DS, Adams R, Scott R, Lindow S, Bruns T, Taylor JW, Uehling J, Bonito G, Vilgalys R, Goldstein AH. Emission Factors of Microbial Volatile Organic Compounds from Environmental Bacteria and Fungi. Environmental Science & Technology. PMID 29947506 DOI: 10.1021/Acs.Est.8B00806  0.776
2018 Aime MC, Urbina H, Liber JA, Bonito G, Oono R. Two new endophytic Atractiellomycetes, Atractidochium hillariae and Proceropycnis hameedii. Mycologia. 110: 136-146. PMID 29863992 DOI: 10.1080/00275514.2018.1446650  0.45
2018 Chen KH, Liao HL, Arnold AE, Bonito G, Lutzoni F. RNA-based analyses reveal fungal communities structured by a senescence gradient in the moss Dicranum scoparium and the presence of putative multi-trophic fungi. The New Phytologist. PMID 29604236 DOI: 10.1111/Nph.15092  0.634
2018 Desirò A, Hao Z, Liber JA, Benucci GMN, Lowry D, Roberson R, Bonito G. Mycoplasma-related endobacteria within Mortierellomycotina fungi: diversity, distribution and functional insights into their lifestyle. The Isme Journal. PMID 29476142 DOI: 10.1038/S41396-018-0053-9  0.4
2018 Deveau A, Bonito G, Uehling J, Paoletti M, Becker M, Bindschedler S, Hacquard S, Hervé V, Labbé J, Lastovetsky OA, Mieszkin S, Millet LJ, Vajna B, Junier P, Bonfante P, et al. Bacterial - Fungal Interactions: ecology, mechanisms and challenges. Fems Microbiology Reviews. PMID 29471481 DOI: 10.1093/Femsre/Fuy008  0.76
2018 Vélez JM, Tschaplinski TJ, Vilgalys R, Schadt CW, Bonito G, Hameed K, Engle N, Hamilton CE. Erratum to “Characterization of a novel, ubiquitous fungal endophyte from the rhizosphere and root endosphere of Populus trees” [Fungal Ecol. 27 (Part A) (June 2017) 78–86] Fungal Ecology. 33: 143. DOI: 10.1016/J.Funeco.2017.12.004  0.595
2018 Healy RA, Horner HT, Bonito G, McLaughlin DJ, Smith ME. An ultrastructural study of spore wall development and septal pores in species of the Pachyphlodes (Pezizaceae, Pezizales) lineage, with a description of the new species Pachyphlodes annagardnerae Mycological Progress. 17: 45-63. DOI: 10.1007/S11557-017-1348-3  0.409
2017 Desirò A, Rimington WR, Jacob A, Pol NV, Smith ME, Trappe JM, Bidartondo MI, Bonito G. Multigene phylogeny of Endogonales, an early diverging lineage of fungi associated with plants. Ima Fungus. 8: 245-257. PMID 29242774 DOI: 10.5598/imafungus.2017.08.02.03  0.357
2017 Gdanetz K, Benucci GMN, Vande Pol N, Bonito G. CONSTAX: a tool for improved taxonomic resolution of environmental fungal ITS sequences. Bmc Bioinformatics. 18: 538. PMID 29212440 DOI: 10.1186/S12859-017-1952-X  0.36
2017 Torres-Cruz TJ, Billingsley Tobias TL, Almatruk M, Hesse CN, Kuske CR, Desirò A, Benucci GMN, Bonito G, Stajich JE, Dunlap C, Arnold AE, Porras-Alfaro A. Bifiguratus adelaidae, gen. et sp. nov., a new member of Mucoromycotina in endophytic and soil-dwelling habitats. Mycologia. 1-16. PMID 28876195 DOI: 10.1080/00275514.2017.1364958  0.432
2017 Bonito G, Hameed K, Toome-Heller M, Healy R, Reid C, Liao HL, Aime MC, Schadt C, Vilgalys R. Atractiella rhizophila, sp. nov., an endorrhizal fungus isolated from the Populus root microbiome. Mycologia. 109: 18-26. PMID 28402786 DOI: 10.1080/00275514.2016.1271689  0.664
2017 Uehling J, Gryganskyi A, Hameed K, Tschaplinski T, Misztal PK, Wu S, Desirò A, Vande Pol N, Du Z, Zienkiewicz A, Zienkiewicz K, Morin E, Tisserant E, Splivallo R, Hainaut M, ... ... Bonito G, et al. Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens. Environmental Microbiology. PMID 28076891 DOI: 10.1111/1462-2920.13669  0.614
2017 Vélez JM, Tschaplinski TJ, Vilgalys R, Schadt CW, Bonito G, Hameed K, Engle N, Hamilton CE. Characterization of a novel, ubiquitous fungal endophyte from the rhizosphere and root endosphere of Populus trees Fungal Ecology. 27: 78-86. DOI: 10.1016/J.Funeco.2017.03.001  0.615
2017 Fechner N, Bonito G, Bougher NL, Lebel T, Halling RE. New species of Austroboletus (Boletaceae) in Australia Mycological Progress. 16: 769-775. DOI: 10.1007/S11557-017-1314-0  0.361
2017 Ge ZW, Brenneman T, Bonito G, Smith ME. Soil pH and mineral nutrients strongly influence truffles and other ectomycorrhizal fungi associated with commercial pecans ( Carya illinoinensis ) Plant and Soil. 418: 493-505. DOI: 10.1007/S11104-017-3312-Z  0.426
2016 Marozzi G, Sánchez S, Benucci GM, Bonito G, Falini LB, Albertini E, Donnini D. Mycorrhization of pecan (Carya illinoinensis) with black truffles: Tuber melanosporum and Tuber brumale. Mycorrhiza. PMID 27838857 DOI: 10.1007/S00572-016-0743-Y  0.38
2016 Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O'Donnell K, Roberson RW, Taylor TN, Uehling J, et al. A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data. Mycologia. 108: 1028-1046. PMID 27738200 DOI: 10.3852/16-042  0.779
2016 Healy RA, Zurier H, Bonito G, Smith ME, Pfister DH. Mycorrhizal detection of native and non-native truffles in a historic arboretum and the discovery of a new North American species, Tuber arnoldianum sp. nov. Mycorrhiza. PMID 27282772 DOI: 10.1007/S00572-016-0713-4  0.454
2016 Berch SM, Bonito G. Truffle diversity (Tuber, Tuberaceae) in British Columbia Mycorrhiza. 26: 587-594. PMID 27083929 DOI: 10.1007/S00572-016-0695-2  0.406
2016 Benucci GM, Bonito GM. The Truffle Microbiome: Species and Geography Effects on Bacteria Associated with Fruiting Bodies of Hypogeous Pezizales. Microbial Ecology. PMID 27026101 DOI: 10.1007/S00248-016-0755-3  0.479
2016 Benucci GM, Lefevre C, Bonito G. Characterizing root-associated fungal communities and soils of Douglas-fir (Pseudotsuga menziesii) stands that naturally produce Oregon white truffles (Tuber oregonense and Tuber gibbosum). Mycorrhiza. 26: 367-76. PMID 26743427 DOI: 10.1007/s00572-015-0677-9  0.401
2016 Bonito G, Hameed K, Ventura R, Krishnan J, Schadt CW, Vilgalys R. Isolating a functionally relevant guild of fungi from the root microbiome of Populus Fungal Ecology. 22: 35-42. DOI: 10.1016/J.Funeco.2016.04.007  0.644
2016 Benucci GMN, Lefevre C, Bonito G. Characterizing root-associated fungal communities and soils of Douglas-fir (Pseudotsuga menziesii) stands that naturally produce Oregon white truffles (Tuber oregonense and Tuber gibbosum) Mycorrhiza. 1-10. DOI: 10.1007/S00572-015-0677-9  0.498
2015 Henkel TW, Obase K, Husbands DR, Uehling JK, Bonito G, Aime MC, Smith ME. New Boletaceae taxa from Guyana: Binderoboletus segoi gen. et sp. nov., Guyanaporus albipodus gen. et sp. nov., Singerocomus rubriflavus gen. et sp. nov., and a new combination for Xerocomus inundabilis. Mycologia. PMID 26490700 DOI: 10.3852/15-075  0.771
2014 Tedersoo L, Bahram M, Põlme S, Kõljalg U, Yorou NS, Wijesundera R, Villarreal Ruiz L, Vasco-Palacios AM, Thu PQ, Suija A, Smith ME, Sharp C, Saluveer E, Saitta A, Rosas M, ... ... Bonito G, et al. Fungal biogeography. Global diversity and geography of soil fungi. Science (New York, N.Y.). 346: 1256688. PMID 25430773 DOI: 10.1126/Science.1256688  0.699
2014 Bonito G, Reynolds H, Robeson MS, Nelson J, Hodkinson BP, Tuskan G, Schadt CW, Vilgalys R. Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants. Molecular Ecology. 23: 3356-70. PMID 24894495 DOI: 10.1111/Mec.12821  0.808
2014 Berch SM, Bonito G. Cultivation of Mediterranean species of Tuber (Tuberaceae) in British Columbia, Canada. Mycorrhiza. 24: 473-9. PMID 24496857 DOI: 10.1007/s00572-014-0562-y  0.392
2014 Payen T, Murat C, Bonito G. Truffle phylogenomics: New insights into truffle evolution and truffle life cycle Advances in Botanical Research. 70: 211-234. DOI: 10.1016/B978-0-12-397940-7.00007-0  0.352
2014 Berch SM, Bonito G. Cultivation of Mediterranean species of Tuber (Tuberaceae) in British Columbia, Canada Mycorrhiza. 1-7. DOI: 10.1007/S00572-014-0562-Y  0.49
2014 Tedersoo L, Bahram M, Põlme S, Kõljalg U, Yorou NS, Wijesundera R, Ruiz LV, Vasco-Palacios AM, Thu PQ, Suija A, Smith ME, Sharp C, Saluveer E, Saitta A, Rosas M, ... ... Bonito G, et al. Global diversity and geography of soil fungi Science. 346.  0.611
2013 Shakya M, Gottel N, Castro H, Yang ZK, Gunter L, Labbé J, Muchero W, Bonito G, Vilgalys R, Tuskan G, Podar M, Schadt CW. A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees. Plos One. 8: e76382. PMID 24146861 DOI: 10.1371/Journal.Pone.0076382  0.665
2013 Smith ME, Gryganskyi A, Bonito G, Nouhra E, Moreno-Arroyo B, Benny G. Phylogenetic analysis of the genus Modicella reveals an independent evolutionary origin of sporocarp-forming fungi in the Mortierellales Fungal Genetics and Biology. 61: 61-68. PMID 24120560 DOI: 10.1016/J.Fgb.2013.10.001  0.433
2013 Bonito G, Smith ME, Nowak M, Healy RA, Guevara G, Cázares E, Kinoshita A, Nouhra ER, Domínguez LS, Tedersoo L, Murat C, Wang Y, Moreno BA, Pfister DH, Nara K, et al. Historical biogeography and diversification of truffles in the Tuberaceae and their newly identified southern hemisphere sister lineage. Plos One. 8: e52765. PMID 23300990 DOI: 10.1371/Journal.Pone.0052765  0.639
2013 Healy RA, Smith ME, Bonito GM, Pfister DH, Ge ZW, Guevara GG, Williams G, Stafford K, Kumar L, Lee T, Hobart C, Trappe J, Vilgalys R, McLaughlin DJ. High diversity and widespread occurrence of mitotic spore mats in ectomycorrhizal Pezizales. Molecular Ecology. 22: 1717-32. PMID 23205556 DOI: 10.1111/Mec.12135  0.727
2013 Husbands DR, Henkel TW, Bonito G, Vilgalys R, Smith ME. New species of Xerocomus (Boletales) from the Guiana Shield, with notes on their mycorrhizal status and fruiting occurrence. Mycologia. 105: 422-35. PMID 23080024 DOI: 10.3852/12-146  0.737
2013 Guevara G, Bonito G, Trappe JM, Cázares E, Williams G, Healy RA, Schadt C, Vilgalys R. New North American truffles (Tuber spp.) and their ectomycorrhizal associations. Mycologia. 105: 194-209. PMID 22962353 DOI: 10.3852/12-087  0.68
2013 Guevara G, Bonito G, Cázares E. Revision of the genus Tuber (Tuberaceae: Pezizales) from Mexico | Revisión del género Tuber (Tuberaceae: Pezizales) de México Revista Mexicana De Biodiversidad. 84: S39-S49. DOI: 10.7550/Rmb.31981  0.381
2013 Wang XH, Benucci GMN, Xie XD, Bonito G, Leisola M, Liu PG, Shamekh S. Morphological, mycorrhizal and molecular characterization of Finnish truffles belonging to the Tuber anniae species-complex Fungal Ecology. 6: 269-280. DOI: 10.1016/J.Funeco.2013.03.002  0.425
2012 Benucci GMN, Bonito G, Falini LB, Bencivenga M. Mycorrhization of Pecan trees (Carya illinoinensis) with commercial truffle species: Tuber aestivum Vittad. and Tuber borchii Vittad Mycorrhiza. 22: 383-392. PMID 21986799 DOI: 10.1007/S00572-011-0413-Z  0.419
2012 Bonito G, Smith ME, Brenneman T, Vilgalys R. Assessing ectomycorrhizal fungal spore banks of truffle producing soils with pecan seedling trap-plants Plant and Soil. 356: 357-366. DOI: 10.1007/S11104-012-1127-5  0.662
2011 Tedersoo L, Abarenkov K, Nilsson RH, Schüssler A, Grelet GA, Kohout P, Oja J, Bonito GM, Veldre V, Jairus T, Ryberg M, Larsson KH, Kõljalg U. Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of its sequences of mycorrhizal fungi. Plos One. 6: e24940. PMID 21949797 DOI: 10.1371/Journal.Pone.0024940  0.32
2011 Bonito G, Brenneman T, Vilgalys R. Ectomycorrhizal fungal diversity in orchards of cultivated pecan (Carya illinoinensis; Juglandaceae). Mycorrhiza. 21: 601-12. PMID 21369784 DOI: 10.1007/S00572-011-0368-0  0.649
2011 Tedersoo L, Abarenkov K, Nilsson RH, Schüssler A, Grelet G, Kohout P, Oja J, Bonito GM, Veldre V, Jairus T, Ryberg M, Larsson K, Kõljalg U. Tidying up international nucleotide sequence databases Plos One. DOI: 10.5282/Ubm/Epub.15397  0.321
2011 Bonito G, Trappe JM, Donovan S, Vilgalys R. The Asian black truffle Tuber indicum can form ectomycorrhizas with North American host plants and complete its life cycle in non-native soils Fungal Ecology. 4: 83-93. DOI: 10.1016/J.Funeco.2010.08.003  0.607
2010 Gryganskyi AP, Lee SC, Litvintseva AP, Smith ME, Bonito G, Porter TM, Anishchenko IM, Heitman J, Vilgalys R. Structure, function, and phylogeny of the mating locus in the Rhizopus oryzae complex. Plos One. 5: e15273. PMID 21151560 DOI: 10.1371/Journal.Pone.0015273  0.55
2010 Bonito GM, Gryganskyi AP, Trappe JM, Vilgalys R. A global meta-analysis of Tuber ITS rDNA sequences: species diversity, host associations and long-distance dispersal. Molecular Ecology. 19: 4994-5008. PMID 21040049 DOI: 10.1111/J.1365-294X.2010.04855.X  0.641
2010 Trappe MJ, Trappe JM, Bonito GM. Kalapuya brunnea gen. & sp. nov. and its relationship to the other sequestrate genera in Morchellaceae. Mycologia. 102: 1058-65. PMID 20943505 DOI: 10.3852/09-232  0.351
2010 Bonito G, Trappe JM, Rawlinson P, Vilgalys R. Improved resolution of major clades within Tuber and taxonomy of species within the Tuber gibbosum complex. Mycologia. 102: 1042-57. PMID 20943504 DOI: 10.3852/09-213  0.603
2010 Bonito G, Isikhuemhen OS, Vilgalys R. Identification of fungi associated with municipal compost using DNA-based techniques. Bioresource Technology. 101: 1021-7. PMID 19766485 DOI: 10.1016/J.Biortech.2009.08.109  0.589
2009 Schoch CL, Sung GH, López-Giráldez F, Townsend JP, Miadlikowska J, Hofstetter V, Robbertse B, Matheny PB, Kauff F, Wang Z, Gueidan C, Andrie RM, Trippe K, Ciufetti LM, Wynns A, ... ... Bonito G, et al. The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Systematic Biology. 58: 224-39. PMID 20525580 DOI: 10.1093/Sysbio/Syp020  0.758
2009 Bonito G. Fast DNA-based identification of the black truffle Tuber melanosporum with direct PCR and species-specific primers Fems Microbiology Letters. 301: 171-175. PMID 19878326 DOI: 10.1111/J.1574-6968.2009.01812.X  0.354
2009 Healy RA, Bonito G, Guevara G. The truffle genus Pachyphloeus in the U.S. and Mexico: Phylogenetic analysis and a new species Mycotaxon. 107: 61-71. DOI: 10.5248/107.61  0.399
2009 Healy RA, Bonito G, Trappe JM. Calongea, a new genus of truffles in the Pezizaceae (Pezizales) | Calongea, un nuevo género de trufas en las Pezizaceae (Pezizales) Anales Del Jardin Botanico De Madrid. 66: 25-32. DOI: 10.3989/Ajbm.2213  0.377
2007 Iotti M, Amicucci A, Bonito G, Bonuso E, Stocchi V, Zambonelli A. Selection of a set of specific primers for the identification of Tuber rufum: A truffle species with high genetic variability Fems Microbiology Letters. 277: 223-231. PMID 18031344 DOI: 10.1111/J.1574-6968.2007.00963.X  0.351
2003 Bonito GM, Coleman DC, Haines BL, Cabrera ML. Can nitrogen budgets explain differences in soil nitrogen mineralization rates of forest stands along an elevation gradient? Forest Ecology and Management. 176: 563-574. DOI: 10.1016/S0378-1127(02)00234-7  0.339
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