| Year |
Citation |
Score |
| 2020 |
Voigt AP, Whitmore SS, Lessing ND, DeLuca AP, Tucker BA, Stone EM, Mullins RF, Scheetz TE. Spectacle: An interactive resource for ocular single-cell RNA sequencing data analysis. Experimental Eye Research. 108204. PMID 32910939 DOI: 10.1016/J.Exer.2020.108204 |
0.386 |
|
| 2020 |
Voigt AP, Whitmore SS, Mulfaul K, Chirco KR, Giacalone JC, Flamme-Wiese MJ, Stockman A, Stone EM, Tucker BA, Scheetz TE, Mullins RF. Bulk and single-cell gene expression analyses reveal aging human choriocapillaris has pro-inflammatory phenotype. Microvascular Research. 104031. PMID 32531351 DOI: 10.1016/J.Mvr.2020.104031 |
0.377 |
|
| 2020 |
Voigt AP, Binkley E, Flamme-Wiese MJ, Zeng S, DeLuca AP, Scheetz TE, Tucker BA, Mullins RF, Stone EM. Single-Cell RNA Sequencing in Human Retinal Degeneration Reveals Distinct Glial Cell Populations. Cells. 9. PMID 32069977 DOI: 10.3390/Cells9020438 |
0.326 |
|
| 2019 |
Voigt AP, Mulfaul K, Mullin NK, Flamme-Wiese MJ, Giacalone JC, Stone EM, Tucker BA, Scheetz TE, Mullins RF. Single-cell transcriptomics of the human retinal pigment epithelium and choroid in health and macular degeneration. Proceedings of the National Academy of Sciences of the United States of America. PMID 31712411 DOI: 10.1073/Pnas.1914143116 |
0.385 |
|
| 2019 |
Voigt AP, Whitmore SS, Flamme-Wiese MJ, Riker M, Wiley LA, Tucker BA, Stone EM, Mullins RF, Scheetz TE. Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing. Experimental Eye Research. PMID 31075224 DOI: 10.1016/J.Exer.2019.05.001 |
0.378 |
|
| 2019 |
Alward WLM, van der Heide C, Khanna CL, Roos BR, Sivaprasad S, Kam J, Ritch R, Lotery A, Igo RP, Cooke Bailey JN, Stone EM, Scheetz TE, Kwon YH, Pasquale LR, Wiggs JL, et al. Myocilin Mutations in Patients With Normal-Tension Glaucoma. Jama Ophthalmology. PMID 30816940 DOI: 10.1001/Jamaophthalmol.2019.0005 |
0.312 |
|
| 2018 |
Inamdar SM, Lankford CK, Laird JG, Novbatova G, Tatro N, Whitmore SS, Scheetz TE, Baker SA. Analysis of 14-3-3 isoforms expressed in photoreceptors. Experimental Eye Research. PMID 29486162 DOI: 10.1016/J.Exer.2018.02.022 |
0.361 |
|
| 2017 |
Weihbrecht K, Goar WA, Pak T, Garrison JE, DeLuca AP, Stone EM, Scheetz TE, Sheffield VC. Keeping an Eye on Bardet-Biedl Syndrome: A Comprehensive Review of the Role of Bardet-Biedl Syndrome Genes in the Eye. Medical Research Archives. 5. PMID 29457131 DOI: 10.18103/Mra.V5I9.1526 |
0.343 |
|
| 2017 |
DeLuca AP, Wallace LMA, Liebmann J, Ritch R, Kawase K, Kwon YH, Robin AL, Stone EM, Scheetz TE, Fingert JH. Genomic Organization of TBK1 Copy Number Variations in Glaucoma Patients. Journal of Glaucoma. PMID 28984711 DOI: 10.1097/Ijg.0000000000000792 |
0.353 |
|
| 2016 |
Morris SM, Davison J, Carter KT, O'Leary RM, Trobridge P, Knoblaugh SE, Myeroff LL, Markowitz SD, Brett BT, Scheetz TE, Dupuy AJ, Starr TK, Grady WM. Transposon mutagenesis identifies candidate genes that cooperate with loss of Transforming Growth Factor-beta signaling in mouse intestinal neoplasms. International Journal of Cancer. PMID 27790711 DOI: 10.1002/Ijc.30491 |
0.776 |
|
| 2016 |
Gaynor SC, Breen ME, Monson ET, de Klerk K, Parsons M, DeLuca AP, Scheetz TE, Zandi PP, Potash JB, Willour VL. A targeted sequencing study of glutamatergic candidate genes in suicide attempters with bipolar disorder. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. PMID 27480506 DOI: 10.1002/Ajmg.B.32479 |
0.343 |
|
| 2016 |
Scheetz TE, Roos BR, Solivan-Timpe F, Miller K, DeLuca AP, Stone EM, Kwon YH, Alward WL, Wang K, Fingert JH. SQSTM1 Mutations and Glaucoma. Plos One. 11: e0156001. PMID 27275741 DOI: 10.1371/Journal.Pone.0156001 |
0.35 |
|
| 2016 |
Kuehn MH, Lipsett KA, Menotti-Raymond M, Whitmore SS, Scheetz TE, David VA, O'Brien SJ, Zhao Z, Jens JK, Snella EM, Ellinwood NM, McLellan GJ. A Mutation in LTBP2 Causes Congenital Glaucoma in Domestic Cats (Felis catus). Plos One. 11: e0154412. PMID 27149523 DOI: 10.1371/Journal.Pone.0154412 |
0.379 |
|
| 2016 |
Reish O, Aspit L, Zouella A, Roth Y, Polak-Charcon S, Baboushkin T, Benyamini L, Scheetz TE, Mussaffi H, Sheffield VC, Parvari R. A Homozygous Nme7 Mutation is Associated with Situs Inversus Totalis. Human Mutation. PMID 27060491 DOI: 10.1002/Humu.22998 |
0.344 |
|
| 2016 |
Priest JR, Osoegawa K, Mohammed N, Nanda V, Kundu R, Schultz K, Lammer EJ, Girirajan S, Scheetz T, Waggott D, Haddad F, Reddy S, Bernstein D, Burns T, Steimle JD, et al. De Novo and Rare Variants at Multiple Loci Support the Oligogenic Origins of Atrioventricular Septal Heart Defects. Plos Genetics. 12: e1005963. PMID 27058611 DOI: 10.1371/Journal.Pgen.1005963 |
0.384 |
|
| 2015 |
Zeng S, Whitmore SS, Sohn EH, Riker MJ, Wiley LA, Scheetz TE, Stone EM, Tucker BA, Mullins RF. Molecular Response of Chorioretinal Endothelial Cells to Complement Injury: Implications for Macular Degeneration. The Journal of Pathology. PMID 26564985 DOI: 10.1002/Path.4669 |
0.312 |
|
| 2015 |
Small KW, DeLuca AP, Whitmore SS, Rosenberg T, Silva-Garcia R, Udar N, Puech B, Garcia CA, Rice TA, Fishman GA, Héon E, Folk JC, Streb LM, Haas CM, Wiley LA, ... Scheetz TE, et al. North Carolina Macular Dystrophy Is Caused by Dysregulation of the Retinal Transcription Factor PRDM13. Ophthalmology. PMID 26507665 DOI: 10.1016/J.Ophtha.2015.10.006 |
0.311 |
|
| 2015 |
DeLuca AP, Whitmore SS, Barnes J, Sharma TP, Westfall TA, Scott CA, Weed MC, Wiley JS, Wiley LA, Johnston RM, Schnieders MJ, Lentz SR, Tucker BA, Mullins RF, Scheetz TE, et al. Hypomorphic mutations in TRNT1 cause retinitis pigmentosa with erythrocytic microcytosis. Human Molecular Genetics. PMID 26494905 DOI: 10.1093/Hmg/Ddv446 |
0.392 |
|
| 2015 |
Hazlewood RJ, Roos BR, Solivan-Timpe F, Honkanen RA, Jampol LM, Gieser SC, Meyer KJ, Mullins RF, Kuehn MH, Scheetz TE, Kwon YH, Alward WL, Stone EM, Fingert JH. Heterozygous triplication of upstream regulatory sequences leads to dysregulation of matrix metalloproteinase 19 in patients with cavitary optic disc anomaly. Human Mutation. 36: 369-78. PMID 25581579 DOI: 10.1002/Humu.22754 |
0.332 |
|
| 2014 |
Riordan JD, Drury LJ, Smith RP, Brett BT, Rogers LM, Scheetz TE, Dupuy AJ. Sequencing methods and datasets to improve functional interpretation of sleeping beauty mutagenesis screens. Bmc Genomics. 15: 1150. PMID 25526783 DOI: 10.1186/1471-2164-15-1150 |
0.794 |
|
| 2014 |
Whitmore SS, Wagner AH, DeLuca AP, Drack AV, Stone EM, Tucker BA, Zeng S, Braun TA, Mullins RF, Scheetz TE. Transcriptomic analysis across nasal, temporal, and macular regions of human neural retina and RPE/choroid by RNA-Seq. Experimental Eye Research. 129: 93-106. PMID 25446321 DOI: 10.1016/J.Exer.2014.11.001 |
0.368 |
|
| 2014 |
Shearer AE, Eppsteiner RW, Booth KT, Ephraim SS, Gurrola J, Simpson A, Black-Ziegelbein EA, Joshi S, Ravi H, Giuffre AC, Happe S, Hildebrand MS, Azaiez H, Bayazit YA, Erdal ME, ... ... Scheetz TE, et al. Utilizing ethnic-specific differences in minor allele frequency to recategorize reported pathogenic deafness variants. American Journal of Human Genetics. 95: 445-53. PMID 25262649 DOI: 10.1016/J.Ajhg.2014.09.001 |
0.338 |
|
| 2014 |
Brownstein CA, Beggs AH, Homer N, Merriman B, Yu TW, Flannery KC, DeChene ET, Towne MC, Savage SK, Price EN, Holm IA, Luquette LJ, Lyon E, Majzoub J, Neupert P, ... ... Scheetz TE, et al. An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biology. 15: R53. PMID 24667040 DOI: 10.1186/Gb-2014-15-3-R53 |
0.338 |
|
| 2014 |
Ziyad S, Riordan J, Huynh K, Brett B, Scheetz T, Dupuy A, Iruela-Arispe M. Endothelial cell mutagenesis during development yields hematopoietic abnormalities Experimental Hematology. 42: S67. DOI: 10.1016/J.Exphem.2014.07.258 |
0.734 |
|
| 2013 |
Muhammad E, Reish O, Ohno Y, Scheetz T, Deluca A, Searby C, Regev M, Benyamini L, Fellig Y, Kihara A, Sheffield VC, Parvari R. Congenital myopathy is caused by mutation of HACD1. Human Molecular Genetics. 22: 5229-36. PMID 23933735 DOI: 10.1093/Hmg/Ddt380 |
0.356 |
|
| 2013 |
Christopher M, Scheetz TE, Mullins RF, Abràmoff MD. Selection of Phototransduction Genes in Homo sapiens. Investigative Ophthalmology & Visual Science. 54: 5489-96. PMID 23868983 DOI: 10.1167/Iovs.12-11454 |
0.326 |
|
| 2013 |
Shearer AE, Black-Ziegelbein EA, Hildebrand MS, Eppsteiner RW, Ravi H, Joshi S, Guiffre AC, Sloan CM, Happe S, Howard SD, Novak B, Deluca AP, Taylor KR, Scheetz TE, Braun TA, et al. Advancing genetic testing for deafness with genomic technology. Journal of Medical Genetics. 50: 627-34. PMID 23804846 DOI: 10.1136/Jmedgenet-2013-101749 |
0.362 |
|
| 2013 |
Nannapaneni K, Ben-Shahar Y, Keen HL, Welsh MJ, Casavant TL, Scheetz TE. Computational identification of operon-like transcriptional loci in eukaryotes. Computers in Biology and Medicine. 43: 738-43. PMID 23668349 DOI: 10.1016/J.Compbiomed.2013.03.004 |
0.761 |
|
| 2013 |
Riordan JD, Keng VW, Tschida BR, Scheetz TE, Bell JB, Podetz-Pedersen KM, Moser CD, Copeland NG, Jenkins NA, Roberts LR, Largaespada DA, Dupuy AJ. Identification of rtl1, a retrotransposon-derived imprinted gene, as a novel driver of hepatocarcinogenesis. Plos Genetics. 9: e1003441. PMID 23593033 DOI: 10.1371/Journal.Pgen.1003441 |
0.388 |
|
| 2013 |
Scheetz TE, Fingert JH, Wang K, Kuehn MH, Knudtson KL, Alward WL, Boldt HC, Russell SR, Folk JC, Casavant TL, Braun TA, Clark AF, Stone EM, Sheffield VC. A genome-wide association study for primary open angle glaucoma and macular degeneration reveals novel Loci. Plos One. 8: e58657. PMID 23536807 DOI: 10.1371/Journal.Pone.0058657 |
0.307 |
|
| 2013 |
Wagner AH, Taylor KR, DeLuca AP, Casavant TL, Mullins RF, Stone EM, Scheetz TE, Braun TA. Prioritization of retinal disease genes: an integrative approach. Human Mutation. 34: 853-9. PMID 23508994 DOI: 10.1002/Humu.22317 |
0.368 |
|
| 2013 |
Wagner AH, Anand VN, Wang WH, Chatterton JE, Sun D, Shepard AR, Jacobson N, Pang IH, Deluca AP, Casavant TL, Scheetz TE, Mullins RF, Braun TA, Clark AF. Exon-level expression profiling of ocular tissues. Experimental Eye Research. 111: 105-11. PMID 23500522 DOI: 10.1016/J.Exer.2013.03.004 |
0.35 |
|
| 2013 |
Taylor KR, Deluca AP, Shearer AE, Hildebrand MS, Black-Ziegelbein EA, Anand VN, Sloan CM, Eppsteiner RW, Scheetz TE, Huygen PL, Smith RJ, Braun TA, Casavant TL. AudioGene: predicting hearing loss genotypes from phenotypes to guide genetic screening. Human Mutation. 34: 539-45. PMID 23280582 DOI: 10.1002/Humu.22268 |
0.341 |
|
| 2012 |
Burnight ER, Staber JM, Korsakov P, Li X, Brett BT, Scheetz TE, Craig NL, McCray PB. A Hyperactive Transposase Promotes Persistent Gene Transfer of a piggyBac DNA Transposon. Molecular Therapy. Nucleic Acids. 1: e50. PMID 23344650 DOI: 10.1038/Mtna.2012.12 |
0.771 |
|
| 2012 |
Fingert JH, Roos BR, Solivan-Timpe F, Miller KA, Oetting TA, Wang K, Kwon YH, Scheetz TE, Stone EM, Alward WL. Analysis of ASB10 variants in open angle glaucoma. Human Molecular Genetics. 21: 4543-8. PMID 22798626 DOI: 10.1093/Hmg/Dds288 |
0.35 |
|
| 2012 |
Eppsteiner RW, Shearer AE, Hildebrand MS, Taylor KR, Deluca AP, Scherer S, Huygen P, Scheetz TE, Braun TA, Casavant TL, Smith RJ. Using the phenome and genome to improve genetic diagnosis for deafness. Otolaryngology--Head and Neck Surgery : Official Journal of American Academy of Otolaryngology-Head and Neck Surgery. 147: 975-7. PMID 22785243 DOI: 10.1177/0194599812454271 |
0.326 |
|
| 2011 |
Quellec G, Russell SR, Seddon JM, Reynolds R, Scheetz T, Mahajan VB, Stone EM, Abrà moff MD. Automated discovery and quantification of image-based complex phenotypes: a twin study of drusen phenotypes in age-related macular degeneration. Investigative Ophthalmology & Visual Science. 52: 9195-206. PMID 22039249 DOI: 10.1167/Iovs.10-6793 |
0.357 |
|
| 2011 |
Brett BT, Berquam-Vrieze KE, Nannapaneni K, Huang J, Scheetz TE, Dupuy AJ. Novel molecular and computational methods improve the accuracy of insertion site analysis in Sleeping Beauty-induced tumors. Plos One. 6: e24668. PMID 21931803 DOI: 10.1371/Journal.Pone.0024668 |
0.755 |
|
| 2011 |
Berquam-Vrieze KE, Nannapaneni K, Brett BT, Holmfeldt L, Ma J, Zagorodna O, Jenkins NA, Copeland NG, Meyerholz DK, Knudson CM, Mullighan CG, Scheetz TE, Dupuy AJ. Cell of origin strongly influences genetic selection in a mouse model of T-ALL. Blood. 118: 4646-56. PMID 21828136 DOI: 10.1182/Blood-2011-03-343947 |
0.758 |
|
| 2011 |
Tucker BA, Scheetz TE, Mullins RF, DeLuca AP, Hoffmann JM, Johnston RM, Jacobson SG, Sheffield VC, Stone EM. Exome sequencing and analysis of induced pluripotent stem cells identify the cilia-related gene male germ cell-associated kinase (MAK) as a cause of retinitis pigmentosa. Proceedings of the National Academy of Sciences of the United States of America. 108: E569-76. PMID 21825139 DOI: 10.1073/Pnas.1108918108 |
0.403 |
|
| 2011 |
Ramachandran S, Clarke LA, Scheetz TE, Amaral MD, McCray PB. Microarray mRNA expression profiling to study cystic fibrosis. Methods in Molecular Biology (Clifton, N.J.). 742: 193-212. PMID 21547734 DOI: 10.1007/978-1-61779-120-8_12 |
0.414 |
|
| 2011 |
McGrail M, Hatler JM, Kuang X, Liao HK, Nannapaneni K, Watt KE, Uhl JD, Largaespada DA, Vollbrecht E, Scheetz TE, Dupuy AJ, Hostetter JM, Essner JJ. Somatic mutagenesis with a Sleeping Beauty transposon system leads to solid tumor formation in zebrafish. Plos One. 6: e18826. PMID 21533036 DOI: 10.1371/Journal.Pone.0018826 |
0.802 |
|
| 2011 |
Fingert JH, Robin AL, Stone JL, Roos BR, Davis LK, Scheetz TE, Bennett SR, Wassink TH, Kwon YH, Alward WL, Mullins RF, Sheffield VC, Stone EM. Copy number variations on chromosome 12q14 in patients with normal tension glaucoma. Human Molecular Genetics. 20: 2482-94. PMID 21447600 DOI: 10.1093/Hmg/Ddr123 |
0.37 |
|
| 2011 |
Zheng J, Miller KK, Yang T, Hildebrand MS, Shearer AE, DeLuca AP, Scheetz TE, Drummond J, Scherer SE, Legan PK, Goodyear RJ, Richardson GP, Cheatham MA, Smith RJ, Dallos P. Carcinoembryonic antigen-related cell adhesion molecule 16 interacts with alpha-tectorin and is mutated in autosomal dominant hearing loss (DFNA4). Proceedings of the National Academy of Sciences of the United States of America. 108: 4218-23. PMID 21368133 DOI: 10.1073/Pnas.1005842108 |
0.309 |
|
| 2011 |
Davis LK, Meyer KJ, Schindler EI, Beck JS, Rudd DS, Grundstad AJ, Scheetz TE, Braun TA, Fingert JH, Alward WL, Kwon YH, Folk JC, Russell SR, Wassink TH, Sheffield VC, et al. Copy number variations and primary open-angle glaucoma. Investigative Ophthalmology & Visual Science. 52: 7122-33. PMID 21310917 DOI: 10.1167/Iovs.10-5606 |
0.326 |
|
| 2011 |
Stone EM, Cideciyan AV, Aleman TS, Scheetz TE, Sumaroka A, Ehlinger MA, Schwartz SB, Fishman GA, Traboulsi EI, Lam BL, Fulton AB, Mullins RF, Sheffield VC, Jacobson SG. Variations in NPHP5 in patients with nonsyndromic leber congenital amaurosis and Senior-Loken syndrome. Archives of Ophthalmology (Chicago, Ill. : 1960). 129: 81-7. PMID 21220633 DOI: 10.1001/Archophthalmol.2010.330 |
0.321 |
|
| 2011 |
Meyer KJ, Davis LK, Schindler EI, Beck JS, Rudd DS, Grundstad AJ, Scheetz TE, Braun TA, Fingert JH, Alward WL, Kwon YH, Folk JC, Russell SR, Wassink TH, Stone EM, et al. Genome-wide analysis of copy number variants in age-related macular degeneration. Human Genetics. 129: 91-100. PMID 20981449 DOI: 10.1007/S00439-010-0904-6 |
0.342 |
|
| 2011 |
Maga T, Deluca A, Taylor K, Scherer S, Scheetz T, Smith R. Targeted-genomic capture and high-throughput sequencing for genetic testing and new gene discovery in atypical hemolytic uremic syndrome Molecular Immunology. 48: 1666. DOI: 10.1016/J.Molimm.2011.06.222 |
0.37 |
|
| 2010 |
Shearer AE, DeLuca AP, Hildebrand MS, Taylor KR, Gurrola J, Scherer S, Scheetz TE, Smith RJ. Comprehensive genetic testing for hereditary hearing loss using massively parallel sequencing. Proceedings of the National Academy of Sciences of the United States of America. 107: 21104-9. PMID 21078986 DOI: 10.1073/Pnas.1012989107 |
0.364 |
|
| 2010 |
Macagno ER, Gaasterland T, Edsall L, Bafna V, Soares MB, Scheetz T, Casavant T, Da Silva C, Wincker P, Tasiemski A, Salzet M. Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes. Bmc Genomics. 11: 407. PMID 20579359 DOI: 10.1186/1471-2164-11-407 |
0.389 |
|
| 2010 |
Wu X, Collier L, Northcott P, Dubuc A, Eberhart C, Meter TV, Zagzag D, Croul S, Dupuy A, Scheetz TE, Scherer S, Bouffet E, Weiss WA, Largaespada DAD, Taylor MD. Abstract 4350: Clonal selection and parallel evolution during leptomeningeal dissemination of human and mouse medulloblastoma result in bicompartmental disease Cancer Research. 70: 4350-4350. DOI: 10.1158/1538-7445.Am10-4350 |
0.412 |
|
| 2010 |
Berquam-Vrieze KE, Nannapaneni K, Zagorodna O, Mullighan C, Meyerholz DK, Copeland N, Jenkins N, Knudson CM, Scheetz T, Dupuy AJ. Abstract 1188: Cell-of-origin determines genetic selection and defines T-cell acute lymphocytic leukemia sub-types in mouse models Cancer Research. 70: 1188-1188. DOI: 10.1158/1538-7445.Am10-1188 |
0.795 |
|
| 2009 |
Dupuy AJ, Rogers LM, Kim J, Nannapaneni K, Starr TK, Liu P, Largaespada DA, Scheetz TE, Jenkins NA, Copeland NG. A modified sleeping beauty transposon system that can be used to model a wide variety of human cancers in mice. Cancer Research. 69: 8150-6. PMID 19808965 DOI: 10.1158/0008-5472.Can-09-1135 |
0.786 |
|
| 2009 |
Fischer AJ, Goss KL, Scheetz TE, Wohlford-Lenane CL, Snyder JM, McCray PB. Differential gene expression in human conducting airway surface epithelia and submucosal glands. American Journal of Respiratory Cell and Molecular Biology. 40: 189-99. PMID 18703793 DOI: 10.1165/Rcmb.2008-0240Oc |
0.368 |
|
| 2008 |
Fingert JH, Oh K, Chung M, Scheetz TE, Andorf JL, Johnson RM, Sheffield VC, Stone EM. Association of a novel mutation in the retinol dehydrogenase 12 (RDH12) gene with autosomal dominant retinitis pigmentosa. Archives of Ophthalmology (Chicago, Ill. : 1960). 126: 1301-7. PMID 18779497 DOI: 10.1001/Archopht.126.9.1301 |
0.391 |
|
| 2008 |
Chun CK, Troll JV, Koroleva I, Brown B, Manzella L, Snir E, Almabrazi H, Scheetz TE, Bonaldo Mde F, Casavant TL, Soares MB, Ruby EG, McFall-Ngai MJ. Effects of colonization, luminescence, and autoinducer on host transcription during development of the squid-vibrio association. Proceedings of the National Academy of Sciences of the United States of America. 105: 11323-8. PMID 18682555 DOI: 10.1073/Pnas.0802369105 |
0.334 |
|
| 2008 |
Kalari KR, Casavant TL, Scheetz TE. A knowledge-based approach to predict intragenic deletions or duplications. Bioinformatics (Oxford, England). 24: 1975-9. PMID 18647756 DOI: 10.1093/Bioinformatics/Btn370 |
0.633 |
|
| 2007 |
O'Leary BM, Davis SG, Smith MF, Brown B, Kemp MB, Almabrazi H, Grundstad JA, Burns T, Leontiev V, Andorf J, Clark AF, Sheffield VC, Casavant TL, Scheetz TE, Stone EM, et al. Transcript annotation prioritization and screening system (TrAPSS) for mutation screening. Journal of Bioinformatics and Computational Biology. 5: 1155-72. PMID 18172923 DOI: 10.1142/S0219720007003132 |
0.417 |
|
| 2007 |
Ben-Shahar Y, Nannapaneni K, Casavant TL, Scheetz TE, Welsh MJ. Eukaryotic operon-like transcription of functionally related genes in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 104: 222-7. PMID 17190802 DOI: 10.1073/Pnas.0609683104 |
0.773 |
|
| 2006 |
Scheetz TE, Kim KY, Swiderski RE, Philp AR, Braun TA, Knudtson KL, Dorrance AM, DiBona GF, Huang J, Casavant TL, Sheffield VC, Stone EM. Regulation of gene expression in the mammalian eye and its relevance to eye disease. Proceedings of the National Academy of Sciences of the United States of America. 103: 14429-34. PMID 16983098 DOI: 10.1073/Pnas.0602562103 |
0.433 |
|
| 2006 |
Kalari KR, Casavant M, Bair TB, Keen HL, Comeron JM, Casavant TL, Scheetz TE. First exons and introns--a survey of GC content and gene structure in the human genome. In Silico Biology. 6: 237-42. PMID 16922687 |
0.599 |
|
| 2006 |
Kang Y, Moressi CJ, Scheetz TE, Xie L, Tran DT, Casavant TL, Ak P, Benham CJ, Davidson BL, McCray PB. Integration site choice of a feline immunodeficiency virus vector. Journal of Virology. 80: 8820-3. PMID 16912328 DOI: 10.1128/Jvi.00719-06 |
0.318 |
|
| 2006 |
Grassi MA, Fingert JH, Scheetz TE, Roos BR, Ritch R, West SK, Kawase K, Shire AM, Mullins RF, Stone EM. Ethnic variation in AMD-associated complement factor H polymorphism p.Tyr402His. Human Mutation. 27: 921-5. PMID 16865697 DOI: 10.1002/Humu.20359 |
0.302 |
|
| 2006 |
Chun CK, Scheetz TE, Bonaldo Mde F, Brown B, Clemens A, Crookes-Goodson WJ, Crouch K, DeMartini T, Eyestone M, Goodson MS, Janssens B, Kimbell JL, Koropatnick TA, Kucaba T, Smith C, et al. An annotated cDNA library of juvenile Euprymna scolopes with and without colonization by the symbiont Vibrio fischeri. Bmc Genomics. 7: 154. PMID 16780587 DOI: 10.1186/1471-2164-7-154 |
0.334 |
|
| 2006 |
Bischof JM, Chiang AP, Scheetz TE, Stone EM, Casavant TL, Sheffield VC, Braun TA. Genome-wide identification of pseudogenes capable of disease-causing gene conversion. Human Mutation. 27: 545-52. PMID 16671097 DOI: 10.1002/Humu.20335 |
0.43 |
|
| 2006 |
Chiang AP, Beck JS, Yen HJ, Tayeh MK, Scheetz TE, Swiderski RE, Nishimura DY, Braun TA, Kim KY, Huang J, Elbedour K, Carmi R, Slusarski DC, Casavant TL, Stone EM, et al. Homozygosity mapping with SNP arrays identifies TRIM32, an E3 ubiquitin ligase, as a Bardet-Biedl syndrome gene (BBS11). Proceedings of the National Academy of Sciences of the United States of America. 103: 6287-92. PMID 16606853 DOI: 10.1073/Pnas.0600158103 |
0.384 |
|
| 2006 |
Braun TA, Shankar SP, Davis S, O'Leary B, Scheetz TE, Clark AF, Sheffield VC, Casavant TL, Stone EM. Prioritizing regions of candidate genes for efficient mutation screening. Human Mutation. 27: 195-200. PMID 16395665 DOI: 10.1002/Humu.20247 |
0.431 |
|
| 2006 |
Banasik M, Moressi C, Hickey M, Scheetz T, McCray P. 697. Molecular Forms of Feline Immunodeficiency Virus Following Gene Transfer to Airway Epithelia Molecular Therapy. 13: S270. DOI: 10.1016/J.Ymthe.2006.08.775 |
0.384 |
|
| 2005 |
Zabner J, Scheetz TE, Almabrazi HG, Casavant TL, Huang J, Keshavjee S, McCray PB. CFTR DeltaF508 mutation has minimal effect on the gene expression profile of differentiated human airway epithelia. American Journal of Physiology. Lung Cellular and Molecular Physiology. 289: L545-53. PMID 15937068 DOI: 10.1152/Ajplung.00065.2005 |
0.382 |
|
| 2005 |
Hackett JD, Scheetz TE, Yoon HS, Soares MB, Bonaldo MF, Casavant TL, Bhattacharya D. Insights into a dinoflagellate genome through expressed sequence tag analysis. Bmc Genomics. 6: 80. PMID 15921535 DOI: 10.1186/1471-2164-6-80 |
0.4 |
|
| 2005 |
Scheetz TE, Trivedi N, Pedretti KT, Braun TA, Casavant TL. Gene transcript clustering: A comparison of parallel approaches Future Generation Computer Systems. 21: 731-735. DOI: 10.1016/J.Future.2004.05.014 |
0.304 |
|
| 2004 |
Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, ... ... Scheetz TE, et al. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Research. 14: 2121-7. PMID 15489334 DOI: 10.1101/Gr.2596504 |
0.377 |
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| 2004 |
Bonaldo MF, Bair TB, Scheetz TE, Snir E, Akabogu I, Bair JL, Berger B, Crouch K, Davis A, Eyestone ME, Keppel C, Kucaba TA, Lebeck M, Lin JL, de Melo AI, et al. 1274 full-open reading frames of transcripts expressed in the developing mouse nervous system. Genome Research. 14: 2053-63. PMID 15489326 DOI: 10.1101/Gr.2601304 |
0.356 |
|
| 2004 |
Zhao SH, Simmons DG, Cross JC, Scheetz TE, Casavant TL, Soares MB, Tuggle CK. PLET1 (C11orf34), a highly expressed and processed novel gene in pig and mouse placenta, is transcribed but poorly spliced in human. Genomics. 84: 114-25. PMID 15203209 DOI: 10.1016/J.Ygeno.2004.02.006 |
0.408 |
|
| 2004 |
Kwitek AE, Gullings-Handley J, Yu J, Carlos DC, Orlebeke K, Nie J, Eckert J, Lemke A, Andrae JW, Bromberg S, Pasko D, Chen D, Scheetz TE, Casavant TL, Soares MB, et al. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Genome Research. 14: 750-7. PMID 15060019 DOI: 10.1101/Gr.1968704 |
0.309 |
|
| 2004 |
Scheetz TE, Laffin JJ, Berger B, Holte S, Baumes SA, Brown R, Chang S, Coco J, Conklin J, Crouch K, Donohue M, Doonan G, Estes C, Eyestone M, Fishler K, et al. High-throughput gene discovery in the rat. Genome Research. 14: 733-41. PMID 15060017 DOI: 10.1101/Gr.1414204 |
0.336 |
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| 2004 |
Keen HL, Ryan MJ, Beyer A, Mathur S, Scheetz TE, Gackle BD, Faraci FM, Casavant TL, Sigmund CD. Gene expression profiling of potential PPARgamma target genes in mouse aorta. Physiological Genomics. 18: 33-42. PMID 15054141 DOI: 10.1152/Physiolgenomics.00027.2004 |
0.389 |
|
| 2004 |
Hackett JD, Yoon HS, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Nosenko T, Bhattacharya D. Migration of the plastid genome to the nucleus in a peridinin dinoflagellate. Current Biology : Cb. 14: 213-8. PMID 14761653 DOI: 10.1016/J.Cub.2004.01.032 |
0.394 |
|
| 2004 |
Scheetz TE, Zabner J, Welsh MJ, Coco J, Eyestone Mde F, Bonaldo M, Kucaba T, Casavant TL, Soares MB, McCray PB. Large-scale gene discovery in human airway epithelia reveals novel transcripts. Physiological Genomics. 17: 69-77. PMID 14701920 DOI: 10.1152/Physiolgenomics.00188.2003 |
0.362 |
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| 2004 |
Kang Y, Scheetz TE, Moressi CJ, Tran DT, Xie L, Davidson BL, Casavant TL, McCray PB. 4. In Vitro and In Vivo Analysis of Feline Immunodeficiency Virus-Based Lentiviral Vector Integration|[ast]| Molecular Therapy. 9. DOI: 10.1016/J.Ymthe.2004.05.086 |
0.398 |
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| 2003 |
Tuggle CK, Green JA, Fitzsimmons C, Woods R, Prather RS, Malchenko S, Soares BM, Kucaba T, Crouch K, Smith C, Tack D, Robinson N, O'Leary B, Scheetz T, Casavant T, et al. EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 14: 565-79. PMID 12925889 DOI: 10.1007/S00335-002-2263-7 |
0.417 |
|
| 2003 |
Scheetz TE, Trivedi N, Roberts CA, Kucaba T, Berger B, Robinson NL, Birkett CL, Gavin AJ, O'Leary B, Braun TA, Bonaldo MF, Robinson JP, Sheffield VC, Soares MB, Casavant TL. ESTprep: preprocessing cDNA sequence reads. Bioinformatics (Oxford, England). 19: 1318-24. PMID 12874042 DOI: 10.1093/Bioinformatics/Btg159 |
0.323 |
|
| 2003 |
Braun TA, Scheetz TE, Webster G, Clark A, Stone EM, Sheffield VC, Casavant TL. Identifying candidate disease genes with high-performance computing Journal of Supercomputing. 26: 7-24. DOI: 10.1023/A:1024417200364 |
0.426 |
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| 2002 |
Scheetz T, Bartlett JA, Walters JD, Schutte BC, Casavant TL, McCray PB. Genomics-based approaches to gene discovery in innate immunity. Immunological Reviews. 190: 137-45. PMID 12493011 DOI: 10.1034/J.1600-065X.2002.19010.X |
0.388 |
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| 2002 |
Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, ... ... Scheetz TE, et al. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99: 16899-903. PMID 12477932 DOI: 10.1073/Pnas.242603899 |
0.39 |
|
| 2002 |
Gavin AJ, Scheetz TE, Roberts CA, O'Leary B, Braun TA, Sheffield VC, Soares MB, Robinson JP, Casavant TL. Pooled library tissue tags for EST-based gene discovery. Bioinformatics (Oxford, England). 18: 1162-6. PMID 12217907 DOI: 10.1093/Bioinformatics/18.9.1162 |
0.35 |
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| 2001 |
Kwitek AE, Tonellato PJ, Chen D, Gullings-Handley J, Cheng YS, Twigger S, Scheetz TE, Casavant TL, Stoll M, Nobrega MA, Shiozawa M, Soares MB, Sheffield VC, Jacob HJ. Automated construction of high-density comparative maps between rat, human, and mouse Genome Research. 11: 1935-1943. PMID 11691858 DOI: 10.1101/Gr.173701 |
0.325 |
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| 2001 |
Braun RC, Pedretti KT, Casavant TL, Scheetz TE, Birkett CL, Roberts CA. Parallelization of local BLAST service on workstation clusters Future Generation Computer Systems. 17: 745-754. DOI: 10.1016/S0167-739X(00)00057-1 |
0.324 |
|
| 2000 |
Dimopoulos G, Casavant TL, Chang S, Scheetz T, Roberts C, Donohue M, Schultz J, Benes V, Bork P, Ansorge W, Soares MB, Kafatos FC. Anopheles gambiae pilot gene discovery project: identification of mosquito innate immunity genes from expressed sequence tags generated from immune-competent cell lines. Proceedings of the National Academy of Sciences of the United States of America. 97: 6619-24. PMID 10841561 DOI: 10.1073/Pnas.97.12.6619 |
0.398 |
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