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Patricia Holden, Ph.D, M.S., M.Eng - Publications

Affiliations: 
1997- Bren School of Environmental Management University of California, Santa Barbara, Santa Barbara, CA, United States 
Area:
environmental microbiology, microbial ecology
Website:
https://holdenlab.eri.ucsb.edu/
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Li D, Van De Werfhorst LC, Rugh MB, Feraud M, Hung WC, Jay J, Cao Y, Parker EA, Grant SB, Holden PA. Limited Bacterial Removal in Full-Scale Stormwater Biofilters as Evidenced by Community Sequencing Analysis. Environmental Science & Technology. PMID 34106689 DOI: 10.1021/acs.est.1c00510  0.382
2021 Feraud M, Holden PA. Evaluating the relationships between specific drainage area characteristics and soil metal concentrations in long-established bioswales receiving suburban stormwater runoff. The Science of the Total Environment. 757: 143778. PMID 33267993 DOI: 10.1016/j.scitotenv.2020.143778  0.351
2019 Wang Y, Schimel JP, Nisbet RM, Gardea-Torresdey JL, Holden PA. Soybeans Grown with Carbonaceous Nanomaterials Maintain Nitrogen Stoichiometry by Assimilating Soil Nitrogen to Offset Impaired Dinitrogen Fixation. Acs Nano. PMID 31825596 DOI: 10.1021/Acsnano.9B06970  0.59
2019 Wang Y, Welch ZS, Ramirez AR, Bouchard DC, Schimel JP, Gardea-Torresdey JL, Holden PA. Effects of carbonaceous nanomaterials on soil-grown soybeans under combined heat and insect stresses Environmental Chemistry. 16: 482. DOI: 10.1071/En19047  0.561
2019 Cai P, Sun X, Wu Y, Gao C, Mortimer M, Holden PA, Redmile-Gordon M, Huang Q. Soil biofilms: microbial interactions, challenges, and advanced techniques for ex-situ characterization Soil Ecology Letters. 1: 85-93. DOI: 10.1007/s42832-019-0017-7  0.363
2018 Ge Y, Shen C, Wang Y, Sun YQ, Schimel JP, Gardea-Torresdey JL, Holden PA. Carbonaceous Nanomaterials Have Higher Effects on Soybean Rhizosphere Prokaryotic Communities During the Reproductive Growth Phase than During Vegetative Growth. Environmental Science & Technology. PMID 29719150 DOI: 10.1021/Acs.Est.8B00937  0.603
2017 Wang Y, Chang CH, Ji Z, Bouchard DC, Nisbet RM, Schimel JP, Gardea-Torresdey JL, Holden PA. Agglomeration Determines Effects of Carbonaceous Nanomaterials on Soybean Nodulation, Dinitrogen Fixation Potential, and Growth in Soil. Acs Nano. PMID 28549216 DOI: 10.1021/Acsnano.7B01337  0.363
2016 Priester JH, Moritz SC, Espinosa K, Ge Y, Wang Y, Nisbet RM, Schimel JP, Susana Goggi A, Gardea-Torresdey JL, Holden PA. Damage assessment for soybean cultivated in soil with either CeO2 or ZnO manufactured nanomaterials. The Science of the Total Environment. PMID 27939199 DOI: 10.1016/J.Scitotenv.2016.11.149  0.603
2016 Ge Y, Priester JH, Mortimer M, Chang CH, Ji Z, Schimel JP, Holden PA. Long-term effects of multi-walled carbon nanotubes and graphene on microbial communities in dry soil. Environmental Science & Technology. PMID 26962674 DOI: 10.1021/Acs.Est.5B05620  0.634
2015 Liu R, Ge Y, Holden PA, Cohen Y. Analysis of soil bacteria susceptibility to manufactured nanoparticles via data visualization. Beilstein Journal of Nanotechnology. 6: 1635-51. PMID 26425414 DOI: 10.3762/bjnano.6.166  0.41
2014 Ge Y, Priester JH, Van De Werfhorst LC, Walker SL, Nisbet RM, An YJ, Schimel JP, Gardea-Torresdey JL, Holden PA. Soybean plants modify metal oxide nanoparticle effects on soil bacterial communities. Environmental Science & Technology. 48: 13489-96. PMID 25354168 DOI: 10.1021/Es5031646  0.648
2014 Ge Y, Schimel JP, Holden PA. Analysis of run-to-run variation of bar-coded pyrosequencing for evaluating bacterial community shifts and individual taxa dynamics. Plos One. 9: e99414. PMID 24911191 DOI: 10.1371/Journal.Pone.0099414  0.49
2014 Holden PA, Schimel JP, Godwin HA. Five reasons to use bacteria when assessing manufactured nanomaterial environmental hazards and fates. Current Opinion in Biotechnology. 27: 73-8. PMID 24863899 DOI: 10.1016/J.Copbio.2013.11.008  0.537
2014 Yoon SJ, Kwak JI, Lee WM, Holden PA, An YJ. Zinc oxide nanoparticles delay soybean development: a standard soil microcosm study. Ecotoxicology and Environmental Safety. 100: 131-7. PMID 24296285 DOI: 10.1016/j.ecoenv.2013.10.014  0.304
2013 Ge Y, Priester JH, Van De Werfhorst LC, Schimel JP, Holden PA. Potential mechanisms and environmental controls of TiO2 nanoparticle effects on soil bacterial communities. Environmental Science & Technology. 47: 14411-7. PMID 24256577 DOI: 10.1021/Es403385C  0.479
2013 Cao Y, Van De Werfhorst LC, Dubinsky EA, Badgley BD, Sadowsky MJ, Andersen GL, Griffith JF, Holden PA. Evaluation of molecular community analysis methods for discerning fecal sources and human waste. Water Research. 47: 6862-72. PMID 23880215 DOI: 10.1016/J.Watres.2013.02.061  0.658
2013 Holden PA, Nisbet RM, Lenihan HS, Miller RJ, Cherr GN, Schimel JP, Gardea-Torresdey JL. Ecological nanotoxicology: integrating nanomaterial hazard considerations across the subcellular, population, community, and ecosystems levels. Accounts of Chemical Research. 46: 813-22. PMID 23039211 DOI: 10.1021/Ar300069T  0.526
2013 Priester JH, Ge Y, Chang V, Stoimenov PK, Schimel JP, Stucky GD, Holden PA. Assessing interactions of hydrophilic nanoscale TiO2 with soil water Journal of Nanoparticle Research. 15. DOI: 10.1007/S11051-013-1899-4  0.637
2012 Priester JH, Ge Y, Mielke RE, Horst AM, Moritz SC, Espinosa K, Gelb J, Walker SL, Nisbet RM, An YJ, Schimel JP, Palmer RG, Hernandez-Viezcas JA, Zhao L, Gardea-Torresdey JL, ... Holden PA, et al. Soybean susceptibility to manufactured nanomaterials with evidence for food quality and soil fertility interruption. Proceedings of the National Academy of Sciences of the United States of America. 109: E2451-6. PMID 22908279 DOI: 10.1073/Pnas.1205431109  0.628
2012 Ge Y, Schimel JP, Holden PA. Identification of soil bacteria susceptible to TiO2 and ZnO nanoparticles. Applied and Environmental Microbiology. 78: 6749-58. PMID 22798374 DOI: 10.1128/Aem.00941-12  0.649
2012 Priester JH, Ge Y, Mielke RE, Horst AM, Moritz SC, Espinosa K, Gelb J, Walker SL, Nisbet RM, An YJ, Schimel JP, Palmer RG, Hernandez-Viezcas JA, Zhao L, Gardea-Torresdey JL, ... Holden PA, et al. Reply to Lombi et al.: Clear effects of manufactured nanomaterials to soybean Proceedings of the National Academy of Sciences of the United States of America. 109: E3337. DOI: 10.1073/Pnas.1215763109  0.546
2011 Ge Y, Schimel JP, Holden PA. Evidence for negative effects of TiO2 and ZnO nanoparticles on soil bacterial communities. Environmental Science & Technology. 45: 1659-64. PMID 21207975 DOI: 10.1021/Es103040T  0.656
2011 Murray J, Reynolds S, Holden P, Werfhorst LVD. Canine Scent and Microbial Source Tracking in Santa Barbara, California Water Intelligence Online. 10: 9781843395485. DOI: 10.2166/9781843395485  0.325
2011 Schimel JP, Wetterstedt JAM, Holden PA, Trumbore SE. Drying/rewetting cycles mobilize old C from deep soils from a California annual grassland Soil Biology and Biochemistry. 43: 1101-1103. DOI: 10.1016/J.Soilbio.2011.01.008  0.609
2010 Roux-Michollet DD, Schimel JP, Holden PA. Pushing the limits for amplifying BrdU-labeled DNA encoding 16S rRNA: DNA polymerase as the determining factor. Journal of Microbiological Methods. 83: 312-6. PMID 20883730 DOI: 10.1016/J.Mimet.2010.09.016  0.517
2008 Xiang SR, Doyle A, Holden PA, Schimel JP. Drying and rewetting effects on C and N mineralization and microbial activity in surface and subsurface California grassland soils Soil Biology and Biochemistry. 40: 2281-2289. DOI: 10.1016/j.soilbio.2008.05.004  0.608
2005 Holden PA, Fierer N. Microbial Processes in the Vadose Zone Vadose Zone Journal. 4: 1-21. DOI: 10.2113/4.1.1  0.43
2003 LaMontagne MG, Schimel JP, Holden PA. Comparison of subsurface and surface soil bacterial communities in California grassland as assessed by terminal restriction fragment length polymorphisms of PCR-amplified 16S rRNA genes. Microbial Ecology. 46: 216-27. PMID 14708746 DOI: 10.1007/s00248-003-1006-y  0.439
2003 Fierer N, Schimel JP, Holden PA. Influence of drying-rewetting frequency on soil bacterial community structure. Microbial Ecology. 45: 63-71. PMID 12469245 DOI: 10.1007/S00248-002-1007-2  0.476
2003 Fierer N, Allen AS, Schimel JP, Holden PA. Controls on microbial CO2 production: A comparison of surface and subsurface soil horizons Global Change Biology. 9: 1322-1332. DOI: 10.1046/J.1365-2486.2003.00663.X  0.636
2003 Fierer N, Schimel JP, Holden PA. Variations in microbial community composition through two soil depth profiles Soil Biology and Biochemistry. 35: 167-176. DOI: 10.1016/S0038-0717(02)00251-1  0.654
2002 Saleta JL, Holden P. Imaging Soil Bacteria in an Environmental Scanning Electron Microscope Microscopy and Microanalysis. 8: 990-991. DOI: 10.1017/S1431927602107148  0.429
2001 Holden PA, Hersman LE, Firestone MK. Water Content Mediated Microaerophilic Toluene Biodegradation in Arid Vadose Zone Materials. Microbial Ecology. 42: 256-266. PMID 12024251 DOI: 10.1007/s00248-001-0010-3  0.575
2001 Holden P, Pierce D. New Environmental Scanning Electron Microscopic (ESEM) Observations of Bacteria on Simulated Soil Substrates Microscopy and Microanalysis. 7: 736-737. DOI: 10.1017/S1431927600029755  0.435
1997 Holden PA, Hunt JR, Firestone MK. Toluene diffusion and reaction in unsaturated Pseudomonas putida biofilms. Biotechnology and Bioengineering. 56: 656-70. PMID 18642338 DOI: 10.1002/(Sici)1097-0290(19971220)56:6<656::Aid-Bit9>3.0.Co;2-M  0.473
1997 Holden PA, Halverson LJ, Firestone MK. Water stress effects on toluene biodegradation by Pseudomonas putida. Biodegradation. 8: 143-51. PMID 9396169 DOI: 10.1023/A:1008237819089  0.49
1997 Holden PA, Firestone MK. Soil microorganisms in soil cleanup: How can we improve our understanding? Journal of Environmental Quality. 26: 32-40.  0.611
1995 Hunt JR, Holden PA, Firestone MK. Coupling transport and biodegradation of VOCs in surface and subsurface soils. Environmental Health Perspectives. 103: 75-8. PMID 8565916 DOI: 10.1289/Ehp.95103S475  0.538
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