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Todd Lowe

Affiliations: 
University of California, Santa Cruz, Santa Cruz, CA, United States 
Area:
Microbiology Biology, Molecular Biology, Biogeochemistry
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"Todd Lowe"
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Children

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Aaron E. Cozen grad student 2008 UC Santa Cruz
David L. Bernick grad student 2010 UC Santa Cruz
Andrew V. Uzilov grad student 2013 UC Santa Cruz

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Publications

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McCann H, Meade CD, Williams LD, et al. (2025) R2DT: a comprehensive platform for visualizing RNA secondary structure. Nucleic Acids Research. 53
Chan PP, Holmes AD, Lowe TM. (2025) Analyzing, visualizing, and annotating tRNA-derived RNAs using tRAX and tDRnamer. Methods in Enzymology. 711: 103-133
McCann H, Meade CD, Williams LD, et al. (2025) R2DT: a comprehensive platform for visualizing RNA secondary structure. Nucleic Acids Research. 53
McCann H, Meade CD, Williams LD, et al. (2024) R2DT: a comprehensive platform for visualising RNA secondary structure. Biorxiv : the Preprint Server For Biology
Manning AC, Bashir MM, Jimenez AR, et al. (2024) Gammaherpesvirus infection triggers the formation of tRNA fragments from premature tRNAs. Biorxiv : the Preprint Server For Biology
Manning AC, Bashir MM, Jimenez AR, et al. (2024) Gammaherpesvirus infection alters transfer RNA splicing and triggers tRNA cleavage. Biorxiv : the Preprint Server For Biology
Holmes AD, Chan PP, Chen Q, et al. (2023) A standardized ontology for naming tRNA-derived RNAs based on molecular origin. Nature Methods
Marygold SJ, Chan PP, Lowe TM. (2022) Systematic identification of tRNA genes in . Micropublication Biology. 2022
Li G, Manning AC, Bagi A, et al. (2022) Distinct Stress-Dependent Signatures of Cellular and Extracellular tRNA-Derived Small RNAs. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2200829
Chan PP, Lin BY, Mak AJ, et al. (2021) tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes. Nucleic Acids Research
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