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Alexander L. Cope

Affiliations: 
University of Southern California, Los Angeles, CA, United States 
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"Alexander Cope"
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Parents

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Michael A. Gilchrist grad student University of Tennessee - Knoxville/Oak Ridge National Laboratory
Robert L. Hettich grad student University of Tennessee - Knoxville/Oak Ridge National Laboratory
Matthew W. Pennell post-doc USC
Premal Shah post-doc Rutgers, New Brunswick

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Publications

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Jiang D, Cope AL, Zhang J, et al. (2023) On the Decoupling of Evolutionary Changes in mRNA and Protein Levels. Molecular Biology and Evolution. 40
Jiang D, Cope AL, Zhang J, et al. (2023) Decoupling of evolutionary changes in mRNA and protein levels. Biorxiv : the Preprint Server For Biology
Favate JS, Liang S, Cope AL, et al. (2022) The landscape of transcriptional and 1translational changes over 22 years of bacterial adaptation. Elife. 11
Cope AL, Shah P. (2022) Intragenomic variation in non-adaptive nucleotide biases causes underestimation of selection on synonymous codon usage. Plos Genetics. 18: e1010256
Cope AL, Gilchrist MA. (2022) Quantifying shifts in natural selection on codon usage between protein regions: a population genetics approach. Bmc Genomics. 23: 408
Nikonorova IA, Wang J, Cope AL, et al. (2022) Isolation, profiling, and tracking of extracellular vesicle cargo in Caenorhabditis elegans. Current Biology : Cb
Cope AL, Anderson F, Favate J, et al. (2022) riboviz 2: A flexible and robust ribosome profiling data analysis and visualization workflow. Bioinformatics (Oxford, England)
Cope AL, Vellappan S, Favate JS, et al. (2022) Exploring Ribosome-Positioning on Translating Transcripts with Ribosome Profiling. Methods in Molecular Biology (Clifton, N.J.). 2404: 83-110
Skalenko KS, Li L, Zhang Y, et al. (2021) Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in . Proceedings of the National Academy of Sciences of the United States of America. 118
Cope AL, O'Meara BC, Gilchrist MA. (2020) Gene expression of functionally-related genes coevolves across fungal species: detecting coevolution of gene expression using phylogenetic comparative methods. Bmc Genomics. 21: 370
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