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Martin Tompa - Publications

Affiliations: 
Computer Science University of Washington, Seattle, Seattle, WA 
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2010 Chen X, Tompa M. Comparative assessment of methods for aligning multiple genome sequences. Nature Biotechnology. 28: 567-72. PMID 20495551 DOI: 10.1038/Nbt.1637  0.309
2009 Tseng HH, Tompa M. Algorithms for locating extremely conserved elements in multiple sequence alignments. Bmc Bioinformatics. 10: 432. PMID 20021665 DOI: 10.1186/1471-2105-10-432  0.318
2009 Prakash A, Tompa M. Assessing the discordance of multiple sequence alignments. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 6: 542-51. PMID 19875854 DOI: 10.1109/Tcbb.2007.70271  0.333
2009 Giacani L, Godornes C, Puray-Chavez M, Guerra-Giraldez C, Tompa M, Lukehart SA, Centurion-Lara A. TP0262 is a modulator of promoter activity of tpr Subfamily II genes of Treponema pallidum ssp. pallidum. Molecular Microbiology. 72: 1087-99. PMID 19432808 DOI: 10.1111/J.1365-2958.2009.06712.X  0.31
2007 Wang AX, Ruzzo WL, Tompa M. How accurately is ncRNA aligned within whole-genome multiple alignments? Bmc Bioinformatics. 8: 417. PMID 17963514 DOI: 10.1186/1471-2105-8-417  0.313
2006 Neph S, Tompa M. MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes. Nucleic Acids Research. 34: W366-8. PMID 16845027 DOI: 10.1093/Nar/Gkl069  0.33
2006 Li N, Tompa M. Analysis of computational approaches for motif discovery. Algorithms For Molecular Biology : Amb. 1: 8. PMID 16722558 DOI: 10.1186/1748-7188-1-8  0.33
2005 Prakash A, Tompa M. Discovery of regulatory elements in vertebrates through comparative genomics. Nature Biotechnology. 23: 1249-56. PMID 16211068 DOI: 10.1038/Nbt1140  0.321
2005 Tompa M, Li N, Bailey TL, Church GM, De Moor B, Eskin E, Favorov AV, Frith MC, Fu Y, Kent WJ, Makeev VJ, Mironov AA, Noble WS, Pavesi G, Pesole G, et al. Assessing computational tools for the discovery of transcription factor binding sites. Nature Biotechnology. 23: 137-44. PMID 15637633 DOI: 10.1038/Nbt1053  0.303
2004 Sinha S, Blanchette M, Tompa M. PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences. Bmc Bioinformatics. 5: 170. PMID 15511292 DOI: 10.1186/1471-2105-5-170  0.386
2003 Blanchette M, Tompa M. FootPrinter: A program designed for phylogenetic footprinting. Nucleic Acids Research. 31: 3840-2. PMID 12824433 DOI: 10.1093/Nar/Gkg606  0.316
2003 Sinha S, Tompa M. YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation. Nucleic Acids Research. 31: 3586-8. PMID 12824371 DOI: 10.1093/Nar/Gkg618  0.315
2002 Sinha S, Tompa M. Discovery of novel transcription factor binding sites by statistical overrepresentation. Nucleic Acids Research. 30: 5549-60. PMID 12490723 DOI: 10.1093/Nar/Gkf669  0.348
2002 Buhler J, Tompa M. Finding motifs using random projections. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 9: 225-42. PMID 12015879 DOI: 10.1089/10665270252935430  0.569
2002 Blanchette M, Schwikowski B, Tompa M. Algorithms for phylogenetic footprinting. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 9: 211-23. PMID 12015878 DOI: 10.1089/10665270252935421  0.388
2002 Blanchette M, Tompa M. Discovery of regulatory elements by a computational method for phylogenetic footprinting. Genome Research. 12: 739-48. PMID 11997340 DOI: 10.1101/Gr.6902  0.37
2001 Tompa M. Identifying functional elements by comparative DNA sequence analysis. Genome Research. 11: 1143-1144. PMID 11435394 DOI: 10.1101/Gr.197101  0.368
1996 Chinn DD, Leighton T, Tompa M. Minimal Adaptive Routing on the Mesh with Bounded Queue Size Journal of Parallel and Distributed Computing. 34: 154-170. DOI: 10.1006/Jpdc.1996.0052  0.315
1996 Beame P, Borodin A, Raghavan P, Ruzzo WL, Tompa M. Time-Space Tradeoffs for Undirected Graph Traversal by Graph Automata Information and Computation. 130: 101-129. DOI: 10.1006/Inco.1996.0085  0.323
1995 Buss J, Tompa M. Lower Bounds on Universal Traversal Sequences Based on Chains of Length Five Information & Computation. 120: 326-329. DOI: 10.1006/Inco.1995.1117  0.304
1992 Tompa M. Lower bounds on universal traversal sequences for cycles and other low degree graphs Siam Journal On Computing. 21: 1153-1160. DOI: 10.1137/0221067  0.305
1989 Borodin A, Cook SA, Dymond PW, Ruzzo WL, Tompa M. Two Applications of Inductive Counting for Complementation Problems Siam Journal On Computing. 18: 559-578. DOI: 10.1137/0218038  0.367
1989 Coppersmith D, Raghavan P, Tompa M. Parallei graph algorithms that are efficient on average Information and Computation. 81: 318-333. DOI: 10.1016/0890-5401(89)90035-7  0.313
1984 Ruzzo WL, Simon J, Tompa M. Space-bounded hierarchies and probabilistic computations Journal of Computer and System Sciences. 28: 216-230. DOI: 10.1016/0022-0000(84)90066-7  0.309
1982 Tompa M. Two Familiar Transitive Closure Algorithms Which Admit No Polynomial Time, Sublinear Space Implementations Siam Journal On Computing. 11: 130-137. DOI: 10.1137/0211010  0.33
1981 Borodin A, Fischer MJ, Kirkpatrick DG, Lynch NA, Tompa M. A time-space tradeoff for sorting on non-oblivious machines☆ Journal of Computer and System Sciences. 22: 351-364. DOI: 10.1016/0022-0000(81)90037-4  0.322
1980 Tompa M. Time-space tradeoffs for computing functions, using connectivity properties of their circuits Journal of Computer and System Sciences. 20: 118-132. DOI: 10.1016/0022-0000(80)90056-2  0.315
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