Year |
Citation |
Score |
2022 |
Doherty LM, Mills CE, Boswell SA, Liu X, Hoyt CT, Gyori B, Buhrlage SJ, Sorger PK. Integrating multi-omics data reveals function and therapeutic potential of deubiquitinating enzymes. Elife. 11. PMID 35737447 DOI: 10.7554/eLife.72879 |
0.509 |
|
2022 |
Balabin H, Hoyt CT, Birkenbihl C, Gyori BM, Bachman J, Kodamullil AT, Plöger PG, Hofmann-Apitius M, Domingo-Fernández D. STonKGs: A Sophisticated Transformer Trained on Biomedical Text and Knowledge Graphs. Bioinformatics (Oxford, England). PMID 34986221 DOI: 10.1093/bioinformatics/btac001 |
0.543 |
|
2021 |
Khatami SG, Domingo-Fernández D, Mubeen S, Hoyt CT, Robinson C, Karki R, Iyappan A, Kodamullil AT, Hofmann-Apitius M. A Systems Biology Approach for Hypothesizing the Effect of Genetic Variants on Neuroimaging Features in Alzheimer's Disease. Journal of Alzheimer's Disease : Jad. PMID 33554913 DOI: 10.3233/JAD-201397 |
0.539 |
|
2020 |
Muslu O, Hoyt CT, De Lacerda MP, Hofmann-Apitius M, Froehlich H. GuiltyTargets: Prioritization of Novel Therapeutic Targets with Deep Network Representation Learning. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32750869 DOI: 10.1109/Tcbb.2020.3003830 |
0.549 |
|
2020 |
Emon MA, Domingo-Fernández D, Hoyt CT, Hofmann-Apitius M. PS4DR: a multimodal workflow for identification and prioritization of drugs based on pathway signatures. Bmc Bioinformatics. 21: 231. PMID 32503412 DOI: 10.1186/S12859-020-03568-5 |
0.565 |
|
2020 |
Mubeen S, Hoyt CT, Gemünd A, Hofmann-Apitius M, Fröhlich H, Domingo-Fernández D. Corrigendum: The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling. Frontiers in Genetics. 11: 436. PMID 32411185 DOI: 10.3389/Fgene.2020.00436 |
0.547 |
|
2020 |
Humayun F, Domingo-Fernández D, Paul George AA, Hopp MT, Syllwasschy BF, Detzel MS, Hoyt CT, Hofmann-Apitius M, Imhof D. A Computational Approach for Mapping Heme Biology in the Context of Hemolytic Disorders. Frontiers in Bioengineering and Biotechnology. 8: 74. PMID 32211383 DOI: 10.3389/Fbioe.2020.00074 |
0.583 |
|
2020 |
Bradford RJ, Davenport JH, England M, Errami H, Gerdt VP, Grigoriev D, Hoyt CT, Kosta M, Radulescu O, Sturm T, Weber A. Identifying the parametric occurrence of multiple steady states for some biological networks Journal of Symbolic Computation. 98: 84-119. DOI: 10.1016/J.Jsc.2019.07.008 |
0.317 |
|
2019 |
Golriz Khatami S, Robinson C, Birkenbihl C, Domingo-Fernández D, Hoyt CT, Hofmann-Apitius M. Challenges of Integrative Disease Modeling in Alzheimer's Disease. Frontiers in Molecular Biosciences. 6: 158. PMID 31993440 DOI: 10.3389/Fmolb.2019.00158 |
0.587 |
|
2019 |
Mubeen S, Hoyt CT, Gemünd A, Hofmann-Apitius M, Fröhlich H, Domingo-Fernández D. The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling. Frontiers in Genetics. 10: 1203. PMID 31824580 DOI: 10.3389/Fgene.2019.01203 |
0.585 |
|
2019 |
Karki R, Kodamullil AT, Hoyt CT, Hofmann-Apitius M. Quantifying mechanisms in neurodegenerative diseases (NDDs) using candidate mechanism perturbation amplitude (CMPA) algorithm. Bmc Bioinformatics. 20: 494. PMID 31604427 DOI: 10.1186/S12859-019-3101-1 |
0.618 |
|
2019 |
Hoyt CT, Domingo-Fernández D, Aldisi R, Xu L, Kolpeja K, Spalek S, Wollert E, Bachman J, Gyori BM, Greene P, Hofmann-Apitius M. Re-curation and rational enrichment of knowledge graphs in Biological Expression Language. Database : the Journal of Biological Databases and Curation. 2019. PMID 31225582 DOI: 10.1093/Database/Baz068 |
0.571 |
|
2019 |
Domingo-Fernández D, Mubeen S, Marín-Llaó J, Hoyt CT, Hofmann-Apitius M. PathMe: merging and exploring mechanistic pathway knowledge. Bmc Bioinformatics. 20: 243. PMID 31092193 DOI: 10.1186/S12859-019-2863-9 |
0.601 |
|
2019 |
Domingo-Fernández D, Hoyt CT, Bobis-Álvarez C, Marín-Llaó J, Hofmann-Apitius M. Erratum: Publisher Correction: ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases. Npj Systems Biology and Applications. 5: 10. PMID 30854225 DOI: 10.1038/s41540-019-0082-7 |
0.49 |
|
2019 |
Ali M, Hoyt CT, Domingo-Fernández D, Lehmann J, Jabeen H. BioKEEN: A library for learning and evaluating biological knowledge graph embeddings. Bioinformatics (Oxford, England). PMID 30768158 DOI: 10.1093/Bioinformatics/Btz117 |
0.359 |
|
2019 |
Domingo-Fernández D, Hoyt CT, Bobis-Álvarez C, Marín-Llaó J, Hofmann-Apitius M.. ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases. Npj Syst Biol Appl.. PMID 30564458 DOI: 10.1038/s41540-018-0078-8 |
0.548 |
|
2018 |
Hoyt CT, Domingo-Fernández D, Hofmann-Apitius M.. BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language. Database. PMID 30576488 DOI: 10.1093/Database/Bay126 |
0.588 |
|
2018 |
Gündel M, Hoyt CT, Hofmann-Apitius M.. BEL2ABM: agent-based simulation of static models in Biological Expression Language. Bioinformatics. 34: 2316-2318. PMID 29949955 DOI: 10.1093/Bioinformatics/Bty107 |
0.555 |
|
2018 |
Hoyt CT, Domingo-Fernández D, Balzer N, Güldenpfennig A, Hofmann-Apitius M.. A systematic approach for identifying shared mechanisms in epilepsy and its comorbidities. Database. PMID 29873705 DOI: 10.1093/Database/Bay050 |
0.576 |
|
2018 |
Hoyt CT, Konotopez A, Ebeling C, Wren J. PyBEL: a computational framework for Biological Expression Language. Bioinformatics (Oxford, England). 34: 703-704. PMID 29048466 DOI: 10.1093/Bioinformatics/Btx660 |
0.355 |
|
2014 |
Amata E, Bland ND, Hoyt CT, Settimo L, Campbell RK, Pollastri MP. Repurposing human PDE4 inhibitors for neglected tropical diseases: design, synthesis and evaluation of cilomilast analogues as Trypanosoma brucei PDEB1 inhibitors. Bioorganic & Medicinal Chemistry Letters. 24: 4084-9. PMID 25127163 DOI: 10.1016/J.Bmcl.2014.07.063 |
0.66 |
|
Show low-probability matches. |