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Dmitri N. Ermolenko - Publications

Affiliations: 
University of Rochester, Rochester, NY 
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Das A, Bao C, Ermolenko DN. Comparing FRET Pairs that Report on Intersubunit Rotation in Bacterial Ribosomes. Journal of Molecular Biology. 435: 168185. PMID 37348753 DOI: 10.1016/j.jmb.2023.168185  0.634
2023 Das A, Bao C, Ermolenko DN. Comparing FRET pairs that report on intersubunit rotation in bacterial ribosomes. Biorxiv : the Preprint Server For Biology. PMID 37214817 DOI: 10.1101/2023.05.09.540051  0.634
2023 Das A, Adiletta N, Ermolenko DN. Interplay between Inter-Subunit Rotation of the Ribosome and Binding of Translational GTPases. International Journal of Molecular Sciences. 24. PMID 37108045 DOI: 10.3390/ijms24086878  0.604
2022 Lai WC, Zhu M, Belinite M, Ballard G, Mathews DH, Ermolenko DN. Intrinsically unstructured sequences in the mRNA 3' UTR reduce the ability of poly(A) tail to enhance translation. Journal of Molecular Biology. 167877. PMID 36368412 DOI: 10.1016/j.jmb.2022.167877  0.349
2022 Bao C, Zhu M, Nykonchuk I, Wakabayashi H, Mathews DH, Ermolenko DN. Specific length and structure rather than high thermodynamic stability enable regulatory mRNA stem-loops to pause translation. Nature Communications. 13: 988. PMID 35190568 DOI: 10.1038/s41467-022-28600-5  0.4
2021 Bao C, Ermolenko DN. Ribosome as a Translocase and Helicase. Biochemistry. Biokhimiia. 86: 992-1002. PMID 34488575 DOI: 10.1134/S0006297921080095  0.55
2020 Ermolenko DN, Mathews DH. Making ends meet: New functions of mRNA secondary structure. Wiley Interdisciplinary Reviews. Rna. e1611. PMID 32597020 DOI: 10.1002/Wrna.1611  0.333
2020 Wakabayashi H, Warnasooriya C, Ermolenko DN. Extending the Spacing between the Shine-Dalgarno Sequence and P-Site Codon Reduces the Rate of mRNA Translocation. Journal of Molecular Biology. 432: 4612-4622. PMID 32544497 DOI: 10.1016/j.jmb.2020.06.008  0.394
2020 Bao C, Loerch S, Ling C, Korostelev AA, Grigorieff N, Ermolenko DN. mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding. Elife. 9. PMID 32427100 DOI: 10.7554/Elife.55799  0.376
2020 Warnasooriya C, Feeney CF, Laird KM, Ermolenko DN, Kielkopf CL. A splice site-sensing conformational switch in U2AF2 is modulated by U2AF1 and its recurrent myelodysplasia-associated mutation. Nucleic Acids Research. PMID 32343311 DOI: 10.1093/Nar/Gkaa293  0.388
2018 Lai WC, Kayedkhordeh M, Cornell EV, Farah E, Bellaousov S, Rietmeijer R, Salsi E, Mathews DH, Ermolenko DN. mRNAs and lncRNAs intrinsically form secondary structures with short end-to-end distances. Nature Communications. 9: 4328. PMID 30337527 DOI: 10.1038/S41467-018-06792-Z  0.348
2018 Warnasooriya C, Ling C, Belashov IA, Salim M, Wedekind JE, Ermolenko DN. Observation of preQ-II riboswitch dynamics using single-molecule FRET. Rna Biology. PMID 30328747 DOI: 10.1080/15476286.2018.1536591  0.37
2017 Lai CW, Ermolenko DN. Ensemble and single-molecule FRET studies of protein synthesis. Methods (San Diego, Calif.). PMID 29247758 DOI: 10.1016/j.ymeth.2017.12.007  0.426
2016 Ling C, Ermolenko DN. Caught on Camera: Intermediates of Ribosome Recycling. Structure (London, England : 1993). 24: 2035-2036. PMID 27926829 DOI: 10.1016/j.str.2016.11.009  0.356
2016 Ling C, Ermolenko DN. Structural insights into ribosome translocation. Wiley Interdisciplinary Reviews. Rna. PMID 27117863 DOI: 10.1002/wrna.1354  0.658
2016 Salsi E, Farah E, Ermolenko DN. EF-G Activation by Phosphate Analogs. Journal of Molecular Biology. 428: 2248-58. PMID 27063503 DOI: 10.1016/j.jmb.2016.03.032  0.589
2016 Agrawal AA, Salsi E, Chatrikhi R, Henderson S, Jenkins JL, Green MR, Ermolenko DN, Kielkopf CL. An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal. Nature Communications. 7: 10950. PMID 26952537 DOI: 10.1038/Ncomms10950  0.31
2015 Ling C, Ermolenko DN. Initiation factor 2 stabilizes the ribosome in a semirotated conformation. Proceedings of the National Academy of Sciences of the United States of America. PMID 26668356 DOI: 10.1073/pnas.1520337112  0.536
2014 Salsi E, Farah E, Netter Z, Dann J, Ermolenko DN. Movement of elongation factor G between compact and extended conformations. Journal of Molecular Biology. 427: 454-67. PMID 25463439 DOI: 10.1016/j.jmb.2014.11.010  0.558
2014 Salsi E, Farah E, Dann J, Ermolenko DN. Following movement of domain IV of elongation factor G during ribosomal translocation. Proceedings of the National Academy of Sciences of the United States of America. 111: 15060-5. PMID 25288752 DOI: 10.1073/pnas.1410873111  0.598
2014 Kurosaki T, Li W, Hoque M, Popp MW, Ermolenko DN, Tian B, Maquat LE. A post-translational regulatory switch on UPF1 controls targeted mRNA degradation. Genes & Development. 28: 1900-16. PMID 25184677 DOI: 10.1101/Gad.245506.114  0.349
2013 Brilot AF, Korostelev AA, Ermolenko DN, Grigorieff N. Structure of the ribosome with elongation factor G trapped in the pretranslocation state. Proceedings of the National Academy of Sciences of the United States of America. 110: 20994-9. PMID 24324137 DOI: 10.1073/Pnas.1311423110  0.62
2013 Azpurua J, Ke Z, Chen IX, Zhang Q, Ermolenko DN, Zhang ZD, Gorbunova V, Seluanov A. Naked mole-rat has increased translational fidelity compared with the mouse, as well as a unique 28S ribosomal RNA cleavage. Proceedings of the National Academy of Sciences of the United States of America. 110: 17350-5. PMID 24082110 DOI: 10.1073/Pnas.1313473110  0.32
2013 Svidritskiy E, Ling C, Ermolenko DN, Korostelev AA. Blasticidin S inhibits translation by trapping deformed tRNA on the ribosome Proceedings of the National Academy of Sciences of the United States of America. 110: 12283-12288. PMID 23824292 DOI: 10.1073/pnas.1304922110  0.5
2013 Ermolenko DN, Cornish PV, Ha T, Noller HF. Antibiotics that bind to the A site of the large ribosomal subunit can induce mRNA translocation. Rna (New York, N.Y.). 19: 158-66. PMID 23249745 DOI: 10.1261/Rna.035964.112  0.47
2011 Ermolenko DN, Noller HF. MRNA translocation occurs during the second step of ribosomal intersubunit rotation Nature Structural and Molecular Biology. 18: 457-463. PMID 21399643 DOI: 10.1038/Nsmb.2011  0.599
2009 Cornish PV, Ermolenko DN, Staple DW, Hoang L, Hickerson RP, Noller HF, Ha T. Following movement of the L1 stalk between three functional states in single ribosomes Proceedings of the National Academy of Sciences of the United States of America. 106: 2571-2576. PMID 19190181 DOI: 10.1073/Pnas.0813180106  0.371
2008 Korostelev A, Ermolenko DN, Noller HF. Structural dynamics of the ribosome Current Opinion in Chemical Biology. 12: 674-683. PMID 18848900 DOI: 10.1016/J.Cbpa.2008.08.037  0.418
2008 Cornish PV, Ermolenko DN, Noller HF, Ha T. Spontaneous Intersubunit Rotation in Single Ribosomes Molecular Cell. 30: 578-588. PMID 18538656 DOI: 10.1016/J.Molcel.2008.05.004  0.711
2007 Spiegel PC, Ermolenko DN, Noller HF. Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome Rna. 13: 1473-1482. PMID 17630323 DOI: 10.1261/Rna.601507  0.554
2007 Ermolenko DN, Spiegel PC, Majumdar ZK, Hickerson RP, Clegg RM, Noller HF. The antibiotic viomycin traps the ribosome in an intermediate state of translocation Nature Structural and Molecular Biology. 14: 493-497. PMID 17515906 DOI: 10.1038/Nsmb1243  0.481
2007 Ermolenko DN, Majumdar ZK, Hickerson RP, Spiegel PC, Clegg RM, Noller HF. Observation of Intersubunit Movement of the Ribosome in Solution Using FRET Journal of Molecular Biology. 370: 530-540. PMID 17512008 DOI: 10.1016/J.Jmb.2007.04.042  0.541
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