Ezgi Karaca
Affiliations: | Izmir Biomedicine and Genome Center | ||
| Dokuz Eylul University, İzmir, Turkey |
Area:
Integrative Modeling, Bimolecular Docking, Protein-protein Interactions, Protein DynamicsWebsite:
https://www.ibg.edu.tr/research-programs/groups/karaca-lab/Google:
"Ezgi Karaca"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Alexandre MJJ Bonvin | grad student | 2008-2013 | Utrecht |
| Teresa Carlomagno | post-doc | 2013-2016 | EMBL Heidelberg |
Children
Sign in to add trainee| Burcu Ozden | research assistant | 2020- | Izmir Biomedicine and Genome Center |
| A. Berçin Barlas | grad student | ||
| Büşra Savaş | grad student | Izmir Biomedicine and Genome Center |
BETA: Related publications
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Publications
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| Turan G, Olgun ÇE, Ayten H, et al. (2023) Dynamic proximity interaction profiling suggests that YPEL2 is involved in cellular stress surveillance. Protein Science : a Publication of the Protein Society. e4859 |
| Ozden B, Şamiloğlu E, Özsan A, et al. (2023) Benchmarking the accuracy of structure-based binding affinity predictors on Spike-ACE2 deep mutational interaction set. Proteins |
| Kryshtafovych A, Montelione GT, Rigden DJ, et al. (2023) Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15. Proteins |
| Ozden B, Kryshtafovych A, Karaca E. (2023) The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15. Proteins |
| Ozden B, Kryshtafovych A, Karaca E. (2023) The Impact of AI-Based Modeling on the Accuracy of Protein Assembly Prediction: Insights from CASP15. Biorxiv : the Preprint Server For Biology |
| Ozden B, Boopathi R, Barlas AB, et al. (2023) Molecular Mechanism of Nucleosome Recognition by the Pioneer Transcription Factor Sox. Journal of Chemical Information and Modeling. 63: 3839-3853 |
| Özden-Yılmaz G, Savas B, Bursalı A, et al. (2023) Differential Occupancy and Regulatory Interactions of KDM6A in Bladder Cell Lines. Cells. 12 |
| Hiz S, Kiliç S, Bademci G, et al. (2022) mutations associated with neurodevelopmental disorder are located on a short amino acid stretch of the anticodon-binding domain. Turkish Journal of Biology = Turk Biyoloji Dergisi. 46: 458-464 |
| Cingoz S, Soydemir D, Oner TO, et al. (2022) Novel biallelic variants affecting the OTU domain of the gene OTUD6B associate with severe intellectual disability syndrome and molecular dynamics simulations. European Journal of Medical Genetics. 104497 |
| Circir A, Koksal Bicakci G, Savas B, et al. (2021) A C-term truncated EIF2Bγ protein encoded by an intronically polyadenylated isoform introduces unfavorable EIF2Bγ-EIF2γ interactions. Proteins |