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Kai Zhang, Ph.D.

Affiliations: 
2012-2018 Bioinformatics and Systems Biology University of California, San Diego, La Jolla, CA 
Area:
Computational biology
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Wei Wang grad student 2012-2018 UCSD
Bing Ren post-doc 2019- Ludwig Institute for Cancer Research, San Diego

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Publications

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Kaplan HS, Logeman BL, Zhang K, et al. (2024) Sensory Input, Sex, and Function Shape Hypothalamic Cell Type Development. Biorxiv : the Preprint Server For Biology
Zhang K, Zemke NR, Armand EJ, et al. (2024) A fast, scalable and versatile tool for analysis of single-cell omics data. Nature Methods
Zu S, Li YE, Wang K, et al. (2023) Single-cell analysis of chromatin accessibility in the adult mouse brain. Nature. 624: 378-389
Zhang K, Zemke NR, Armand EJ, et al. (2023) SnapATAC2: a fast, scalable and versatile tool for analysis of single-cell omics data. Biorxiv : the Preprint Server For Biology
Raviram R, Raman A, Preissl S, et al. (2023) Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity. Proceedings of the National Academy of Sciences of the United States of America. 120: e2210991120
Chen PB, Fiaux PC, Zhang K, et al. (2022) Systematic discovery and functional dissection of enhancers needed for cancer cell fitness and proliferation. Cell Reports. 41: 111630
Zhang K, Hocker JD, Miller M, et al. (2021) A single-cell atlas of chromatin accessibility in the human genome. Cell
Li YE, Preissl S, Hou X, et al. (2021) An atlas of gene regulatory elements in adult mouse cerebrum. Nature. 598: 129-136
Hocker JD, Poirion OB, Zhu F, et al. (2021) Cardiac cell type-specific gene regulatory programs and disease risk association. Science Advances. 7
Fang R, Preissl S, Li Y, et al. (2021) Comprehensive analysis of single cell ATAC-seq data with SnapATAC. Nature Communications. 12: 1337
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