| Year |
Citation |
Score |
| 2024 |
Kirangwa J, Laetsch DR, King E, Stevens L, Blaxter M, Holovachov O, Schiffer P. Evolutionary plasticity in nematode Hox gene complements and genomic loci arrangement. Scientific Reports. 14: 29513. PMID 39604390 DOI: 10.1038/s41598-024-79962-3 |
0.822 |
|
| 2024 |
Blaxter ML, Leech C, Lunt DH. A catalogue of chromosome counts for Phylum Nematoda. Wellcome Open Research. 9: 55. PMID 39534537 DOI: 10.12688/wellcomeopenres.20550.1 |
0.383 |
|
| 2024 |
Blaxter M, Pauperio J, Schoch C, Howe K. Taxonomy Identifiers (TaxId) for Biodiversity Genomics: a guide to getting TaxId for submission of data to public databases. Wellcome Open Research. 9: 591. PMID 39526195 DOI: 10.12688/wellcomeopenres.22949.1 |
0.374 |
|
| 2024 |
Mc Cartney AM, Formenti G, Mouton A, De Panis D, Marins LS, Leitão HG, Diedericks G, Kirangwa J, Morselli M, Salces-Ortiz J, Escudero N, Iannucci A, Natali C, Svardal H, Fernández R, ... ... Blaxter M, et al. Author Correction: The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics. Npj Biodiversity. 3: 31. PMID 39407030 DOI: 10.1038/s44185-024-00065-3 |
0.323 |
|
| 2024 |
Twyford AD, Beasley J, Barnes I, Allen H, Azzopardi F, Bell D, Blaxter ML, Broad G, Campos-Dominguez L, Choonea D, Crowley L, Cuber P, Cunliffe M, Dombrowski A, Douglas B, et al. A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project. Wellcome Open Research. 9: 339. PMID 39386966 DOI: 10.12688/wellcomeopenres.21143.1 |
0.316 |
|
| 2024 |
de Dios Martinez T, Fontsere C, Renom P, Stiller J, Llovera L, Uliano-Silva M, Sánchez-Gracia A, Wright C, Lizano E, Caballero B, Navarro A, Civit S, Robbins RK, Blaxter M, Marquès T, et al. Whole genomes from the extinct Xerces Blue butterfly can help identify declining insect species. Elife. 12. PMID 39365295 DOI: 10.7554/eLife.87928 |
0.365 |
|
| 2024 |
Mc Cartney AM, Formenti G, Mouton A, De Panis D, Marins LS, Leitão HG, Diedericks G, Kirangwa J, Morselli M, Salces-Ortiz J, Escudero N, Iannucci A, Natali C, Svardal H, Fernández R, ... ... Blaxter M, et al. The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics. Npj Biodiversity. 3: 28. PMID 39289538 DOI: 10.1038/s44185-024-00054-6 |
0.371 |
|
| 2024 |
Kieninger M, Stevens L, Collins JC, Blaxter M. The genome sequence of the nematode (Rhabditida, Rhabditidae) (Kiontke, 1997). Wellcome Open Research. 9: 292. PMID 39114493 DOI: 10.12688/wellcomeopenres.22416.1 |
0.709 |
|
| 2024 |
Gendron EMS, Qing X, Sevigny JL, Li H, Liu Z, Blaxter M, Powers TO, Thomas WK, Porazinska DL. Comparative mitochondrial genomics in Nematoda reveal astonishing variation in compositional biases and substitution rates indicative of multi-level selection. Bmc Genomics. 25: 615. PMID 38890582 DOI: 10.1186/s12864-024-10500-1 |
0.343 |
|
| 2024 |
Davison A, Chowdhury M, Johansen M, Uliano-Silva M, Blaxter M. High heteroplasmy is associated with low mitochondrial copy number and selection against non-synonymous mutations in the snail Cepaea nemoralis. Bmc Genomics. 25: 596. PMID 38872121 DOI: 10.1186/s12864-024-10505-w |
0.682 |
|
| 2024 |
Zhang X, Blaxter M, Wood JMD, Tracey A, McCarthy S, Thorpe P, Rayner JG, Zhang S, Sikkink KL, Balenger SL, Bailey NW. Temporal genomics in Hawaiian crickets reveals compensatory intragenomic coadaptation during adaptive evolution. Nature Communications. 15: 5001. PMID 38866741 DOI: 10.1038/s41467-024-49344-4 |
0.307 |
|
| 2024 |
Khalaf A, Francis O, Blaxter ML. Genome evolution in intracellular parasites: Microsporidia and Apicomplexa. The Journal of Eukaryotic Microbiology. e13033. PMID 38785208 DOI: 10.1111/jeu.13033 |
0.405 |
|
| 2024 |
Boyes D, Blaxter ML. The genome sequence of the Tipped Oak Case-bearer, (Duponchel 1843). Wellcome Open Research. 9: 3. PMID 38686023 DOI: 10.12688/wellcomeopenres.19917.1 |
0.345 |
|
| 2024 |
Vancaester E, Blaxter ML. MarkerScan: Separation and assembly of cobionts sequenced alongside target species in biodiversity genomics projects. Wellcome Open Research. 9: 33. PMID 38617467 DOI: 10.12688/wellcomeopenres.20730.1 |
0.404 |
|
| 2024 |
Wright CJ, Stevens L, Mackintosh A, Lawniczak M, Blaxter M. Comparative genomics reveals the dynamics of chromosome evolution in Lepidoptera. Nature Ecology & Evolution. PMID 38383850 DOI: 10.1038/s41559-024-02329-4 |
0.679 |
|
| 2024 |
Stevens L, Kieninger M, Chan B, Wood JMD, Gonzalez de la Rosa P, Allen J, Blaxter M. The genome of Litomosoides sigmodontis illuminates the origins of Y chromosomes in filarial nematodes. Plos Genetics. 20: e1011116. PMID 38227589 DOI: 10.1371/journal.pgen.1011116 |
0.616 |
|
| 2024 |
Khalaf A, Lawniczak MKN, Blaxter ML, Jaron KS. Polyploidy is widespread in Microsporidia. Microbiology Spectrum. e0366923. PMID 38214524 DOI: 10.1128/spectrum.03669-23 |
0.365 |
|
| 2023 |
Boyes D, Blaxter ML. The genome sequence of the Beautiful Hook-tip, (Denis & Schiffermüller, 1775). Wellcome Open Research. 8: 529. PMID 39309423 DOI: 10.12688/wellcomeopenres.20351.1 |
0.383 |
|
| 2023 |
Adkins P, Bishop J, Mrowicki R, Blaxter ML, Modepalli V. The genome sequence of the brown sea anemone, (Linnaeus, 1761). Wellcome Open Research. 8: 536. PMID 39219858 DOI: 10.12688/wellcomeopenres.20376.1 |
0.366 |
|
| 2023 |
Blaxter ML, Spurgeon D, Kille P. The genome sequence of the common earthworm, (Linnaeus, 1758). Wellcome Open Research. 8: 500. PMID 38249959 DOI: 10.12688/wellcomeopenres.20178.1 |
0.367 |
|
| 2023 |
Stevens L, Martínez-Ugalde I, King E, Wagah M, Absolon D, Bancroft R, Gonzalez de la Rosa P, Hall JL, Kieninger M, Kloch A, Pelan S, Robertson E, Pedersen AB, Abreu-Goodger C, Buck AH, ... Blaxter M, et al. Ancient diversity in host-parasite interaction genes in a model parasitic nematode. Nature Communications. 14: 7776. PMID 38012132 DOI: 10.1038/s41467-023-43556-w |
0.693 |
|
| 2023 |
R N Ferreira JG, A Americo J, L A S do Amaral D, Sendim F, R da Cunha Y, Blaxter M, Uliano-Silva M, de F Rebelo M. A chromosome-level assembly supports genome-wide investigation of the DMRT gene family in the golden mussel (Limnoperna fortunei). Gigascience. 12. PMID 37776366 DOI: 10.1093/gigascience/giad072 |
0.41 |
|
| 2023 |
Johansen M, Saenko S, Schilthuizen M, Blaxter M, Davison A. Fine mapping of the Cepaea nemoralis shell colour and mid-banded loci using a high-density linkage map. Heredity. PMID 37758900 DOI: 10.1038/s41437-023-00648-z |
0.625 |
|
| 2023 |
Uliano-Silva M, Ferreira JGRN, Krasheninnikova K, Formenti G, Abueg L, Torrance J, Myers EW, Durbin R, Blaxter M, McCarthy SA. MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads. Bmc Bioinformatics. 24: 288. PMID 37464285 DOI: 10.1186/s12859-023-05385-y |
0.345 |
|
| 2023 |
Blaxter M. The genome sequence of the spotted kaleidoscope jellyfish, (James-Clark, 1863). Wellcome Open Research. 8: 6. PMID 36875804 DOI: 10.12688/wellcomeopenres.18669.1 |
0.365 |
|
| 2023 |
Challis R, Kumar S, Sotero-Caio C, Brown M, Blaxter M. Genomes on a Tree (GoaT): A versatile, scalable search engine for genomic and sequencing project metadata across the eukaryotic tree of life. Wellcome Open Research. 8: 24. PMID 36864925 DOI: 10.12688/wellcomeopenres.18658.1 |
0.75 |
|
| 2023 |
Vancaester E, Blaxter M. Phylogenomic analysis of Wolbachia genomes from the Darwin Tree of Life biodiversity genomics project. Plos Biology. 21: e3001972. PMID 36689552 DOI: 10.1371/journal.pbio.3001972 |
0.438 |
|
| 2022 |
Sloat SA, Noble LM, Paaby AB, Bernstein M, Chang A, Kaur T, Yuen J, Tintori SC, Jackson JL, Martel A, Salome Correa JA, Stevens L, Kiontke K, Blaxter M, Rockman MV. nematodes colonize ephemeral resource patches in neotropical forests. Ecology and Evolution. 12: e9124. PMID 35898425 DOI: 10.1002/ece3.9124 |
0.647 |
|
| 2022 |
Blaxter M, Archibald JM, Childers AK, Coddington JA, Crandall KA, Di Palma F, Durbin R, Edwards SV, Graves JAM, Hackett KJ, Hall N, Jarvis ED, Johnson RN, Karlsson EK, Kress WJ, et al. Why sequence all eukaryotes? Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042801 DOI: 10.1073/pnas.2115636118 |
0.361 |
|
| 2021 |
Dunn JC, Hamer KC, Morris AJ, Grice PV, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Dolucan J, Quail MA, McCarthy SA, Uliano-Silva M, Howe K, Torrance J, ... ... Blaxter M, et al. The genome sequence of the European turtle dove, Linnaeus 1758. Wellcome Open Research. 6: 191. PMID 39021440 DOI: 10.12688/wellcomeopenres.17060.1 |
0.343 |
|
| 2021 |
Carpenter AI, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Quail MA, McCarthy SA, Uliano Da Silva M, Howe K, Torrance J, Wood J, Pelan S, Sims Y, ... ... Blaxter M, et al. The genome sequence of the European water vole, Linnaeus 1758. Wellcome Open Research. 6: 162. PMID 35600244 DOI: 10.12688/wellcomeopenres.16753.1 |
0.367 |
|
| 2021 |
Nürnberger B, Baird SJE, Čížková D, Bryjová A, Mudd AB, Blaxter ML, Szymura JM. A dense linkage map for a large repetitive genome: discovery of the sex-determining region in hybridizing fire-bellied toads (Bombina bombina and Bombina variegata). G3 (Bethesda, Md.). PMID 34849761 DOI: 10.1093/g3journal/jkab286 |
0.323 |
|
| 2021 |
Kwiatkowski D, Blaxter M. The genome sequence of the bootlace worm, (Gunnerus, 1770). Wellcome Open Research. 6: 272. PMID 34796280 DOI: 10.12688/wellcomeopenres.17193.1 |
0.375 |
|
| 2021 |
Mead D, Ogden R, Meredith A, Peniche G, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Holmes N, Wright V, Loose M, Quail MA, McCarthy SA, ... ... Blaxter M, et al. The genome sequence of the European golden eagle, Linnaeus 1758. Wellcome Open Research. 6: 112. PMID 34671705 DOI: 10.12688/wellcomeopenres.16631.1 |
0.349 |
|
| 2021 |
Howe K, Dwinell M, Shimoyama M, Corton C, Betteridge E, Dove A, Quail MA, Smith M, Saba L, Williams RW, Chen H, Kwitek AE, McCarthy SA, Uliano-Silva M, Chow W, ... ... Blaxter M, et al. The genome sequence of the Norway rat, Berkenhout 1769. Wellcome Open Research. 6: 118. PMID 34660910 DOI: 10.12688/wellcomeopenres.16854.1 |
0.349 |
|
| 2021 |
Hansen T, Fjelldal PG, Lien S, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Fedrigo O, Mountcastle J, Jarvis E, McCarthy SA, Chow W, Howe K, ... ... Blaxter M, et al. The genome sequence of the brown trout, Linnaeus 1758. Wellcome Open Research. 6: 108. PMID 34632087 DOI: 10.12688/wellcomeopenres.16838.1 |
0.403 |
|
| 2021 |
Threlfall J, Blaxter M. Launching the Tree of Life Gateway. Wellcome Open Research. 6: 125. PMID 34095514 DOI: 10.12688/wellcomeopenres.16913.1 |
0.396 |
|
| 2021 |
Caurcel C, Laetsch DR, Challis R, Kumar S, Gharbi K, Blaxter M. MolluscDB: a genome and transcriptome database for molluscs. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 376: 20200157. PMID 33813885 DOI: 10.1098/rstb.2020.0157 |
0.822 |
|
| 2020 |
Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Quail MA, McCarthy SA, Howe K, Sims Y, Torrance J, ... ... Blaxter M, et al. The genome sequence of the eastern grey squirrel, Gmelin, 1788. Wellcome Open Research. 5: 27. PMID 33215047 DOI: 10.12688/wellcomeopenres.15721.1 |
0.332 |
|
| 2020 |
Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Dolucan J, Dudchenko O, Omer AD, Weisz D, Lieberman Aiden E, Fedrigo O, ... ... Blaxter M, et al. The genome sequence of the Eurasian red squirrel, Linnaeus 1758. Wellcome Open Research. 5: 18. PMID 32587897 DOI: 10.12688/wellcomeopenres.15679.1 |
0.332 |
|
| 2020 |
Mead D, Hailer F, Chadwick E, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan JD, Dudchenko O, Omer A, Weisz D, Lieberman Aiden E, McCarthy S, ... ... Blaxter M, et al. The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758. Wellcome Open Research. 5: 33. PMID 32258427 DOI: 10.12688/wellcomeopenres.15722.1 |
0.332 |
|
| 2020 |
Susič N, Koutsovoulos GD, Riccio C, Danchin EGJ, Blaxter ML, Lunt DH, Strajnar P, Širca S, Urek G, Stare BG. Genome sequence of the root-knot nematode . Journal of Nematology. 52: 1-5. PMID 32180388 DOI: 10.21307/Jofnem-2020-025 |
0.43 |
|
| 2020 |
Stevens L, Rooke S, Falzon LC, Machuka EM, Momanyi K, Murungi MK, Njoroge SM, Odinga CO, Ogendo A, Ogola J, Fèvre EM, Blaxter M. The Genome of Caenorhabditis bovis. Current Biology : Cb. PMID 32109387 DOI: 10.1016/J.Cub.2020.01.074 |
0.759 |
|
| 2020 |
Challis R, Richards E, Rajan J, Cochrane G, Blaxter M. BlobToolKit - Interactive Quality Assessment of Genome Assemblies. G3 (Bethesda, Md.). PMID 32071071 DOI: 10.1534/G3.119.400908 |
0.469 |
|
| 2020 |
Pascoal S, Risse JE, Zhang X, Blaxter M, Cezard T, Challis RJ, Gharbi K, Hunt J, Kumar S, Langan E, Liu X, Rayner JG, Ritchie MG, Snoek BL, Trivedi U, et al. Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild. Evolution Letters. 4: 19-33. PMID 32055408 DOI: 10.1002/evl3.148 |
0.755 |
|
| 2020 |
Davison A, McDowell GS, Holden JM, Johnson HF, Wade CM, Chiba S, Jackson DJ, Levin M, Blaxter ML. Formin, an opinion. Development (Cambridge, England). 147. PMID 31919229 DOI: 10.1242/Dev.187427 |
0.614 |
|
| 2020 |
Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Quail MA, McCarthy SA, Howe K, Sims Y, Torrance J, ... ... Blaxter M, et al. The genome sequence of the eastern grey squirrel, Sciurus carolinensis Gmelin, 1788 Wellcome Open Research. 5: 27. DOI: 10.12688/wellcomeopenres.15721.1 |
0.333 |
|
| 2020 |
Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Dolucan J, Dudchenko O, Omer AD, Weisz D, Lieberman Aiden E, Fedrigo O, ... ... Blaxter M, et al. The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758 Wellcome Open Research. 5: 18. DOI: 10.12688/wellcomeopenres.15679.1 |
0.333 |
|
| 2019 |
Schiffer PH, Danchin EGJ, Burnell AM, Creevey CJ, Wong S, Dix I, O'Mahony G, Culleton BA, Rancurel C, Stier G, Martínez-Salazar EA, Marconi A, Trivedi U, Kroiher M, Thorne MAS, ... ... Blaxter M, et al. Signatures of the Evolution of Parthenogenesis and Cryptobiosis in the Genomes of Panagrolaimid Nematodes. Iscience. 21: 587-602. PMID 31759330 DOI: 10.1016/J.Isci.2019.10.039 |
0.524 |
|
| 2019 |
Hearn J, Blaxter M, Schönrogge K, Nieves-Aldrey JL, Pujade-Villar J, Huguet E, Drezen JM, Shorthouse JD, Stone GN. Genomic dissection of an extended phenotype: Oak galling by a cynipid gall wasp. Plos Genetics. 15: e1008398. PMID 31682601 DOI: 10.1371/Journal.Pgen.1008398 |
0.349 |
|
| 2019 |
Edelman NB, Frandsen PB, Miyagi M, Clavijo B, Davey J, Dikow RB, García-Accinelli G, Van Belleghem SM, Patterson N, Neafsey DE, Challis R, Kumar S, Moreira GRP, Salazar C, Chouteau M, ... ... Blaxter M, et al. Genomic architecture and introgression shape a butterfly radiation. Science (New York, N.Y.). 366: 594-599. PMID 31672890 DOI: 10.1126/Science.Aaw2090 |
0.774 |
|
| 2019 |
Colgan TJ, Carolan JC, Sumner S, Blaxter ML, Brown MJF. Infection by the castrating parasitic nematode Sphaerularia bombi changes gene expression in Bombus terrestris bumblebee queens. Insect Molecular Biology. PMID 31566835 DOI: 10.1111/Imb.12618 |
0.378 |
|
| 2019 |
Wan F, Yin C, Tang R, Chen M, Wu Q, Huang C, Qian W, Rota-Stabelli O, Yang N, Wang S, Wang G, Zhang G, Guo J, Gu LA, Chen L, ... ... Blaxter M, et al. A chromosome-level genome assembly of Cydia pomonella provides insights into chemical ecology and insecticide resistance. Nature Communications. 10: 4237. PMID 31530873 DOI: 10.1038/S41467-019-12175-9 |
0.408 |
|
| 2019 |
Stevens L, Félix MA, Beltran T, Braendle C, Caurcel C, Fausett S, Fitch D, Frézal L, Gosse C, Kaur T, Kiontke K, Newton MD, Noble LM, Richaud A, Rockman MV, ... ... Blaxter M, et al. Comparative genomics of 10 new species. Evolution Letters. 3: 217-236. PMID 31007946 DOI: 10.1002/evl3.110 |
0.727 |
|
| 2019 |
Hearn J, Pearson M, Blaxter M, Wilson PJ, Little TJ. Genome-wide methylation is modified by caloric restriction in Daphnia magna. Bmc Genomics. 20: 197. PMID 30849937 DOI: 10.1186/S12864-019-5578-4 |
0.324 |
|
| 2019 |
Chow FW, Koutsovoulos G, Ovando-Vázquez C, Neophytou K, Bermúdez-Barrientos JR, Laetsch DR, Robertson E, Kumar S, Claycomb JM, Blaxter M, Abreu-Goodger C, Buck AH. Secretion of an Argonaute protein by a parasitic nematode and the evolution of its siRNA guides. Nucleic Acids Research. PMID 30820541 DOI: 10.1093/Nar/Gkz142 |
0.783 |
|
| 2019 |
Tandonnet S, Koutsovoulos GD, Adams S, Cloarec D, Parihar M, Blaxter ML, Pires-daSilva A. Chromosome-Wide Evolution and Sex Determination in the Three-Sexed Nematode . G3 (Bethesda, Md.). PMID 30770412 DOI: 10.1534/G3.119.0011 |
0.311 |
|
| 2019 |
Beltran T, Barroso C, Birkle TY, Stevens L, Schwartz HT, Sternberg PW, Fradin H, Gunsalus K, Piano F, Sharma G, Cerrato C, Ahringer J, Martínez-Pérez E, Blaxter M, Sarkies P. Comparative Epigenomics Reveals that RNA Polymerase II Pausing and Chromatin Domain Organization Control Nematode piRNA Biogenesis. Developmental Cell. PMID 30713076 DOI: 10.1016/J.Devcel.2018.12.026 |
0.672 |
|
| 2019 |
Sjokvist E, Lemcke R, Kamble M, Turner F, Blaxter M, Havis NHD, Lyngkjær MF, Radutoiu S. Dissection of Ramularia Leaf Spot Disease by Integrated Analysis of Barley and Ramularia collo-cygni Transcriptome Responses. Molecular Plant-Microbe Interactions : Mpmi. 32: 176-193. PMID 30681911 DOI: 10.1094/Mpmi-05-18-0113-R |
0.327 |
|
| 2019 |
Coghlan A, Tyagi R, Cotton JA, Holroyd N, Rosa BA, Tsai IJ, Laetsch DR, Beech RN, Day TA, Hallsworth-Pepin K, Ke H, Kuo T, Lee TJ, Martin J, Maizels RM, ... ... Blaxter ML, et al. Comparative genomics of the major parasitic worms Nature Genetics. 51: 163-174. PMID 30397333 DOI: 10.1038/S41588-018-0262-1 |
0.749 |
|
| 2019 |
Parkinson J, Whitton C, Guiliano D, Daub J, Blaxter M. 200000 nematode expressed sequence tags on the Net. Trends in Parasitology. 17: 394-396. PMID 11700236 DOI: 10.1016/S1471-4922(01)01954-7 |
0.376 |
|
| 2018 |
Regan T, Barnett MW, Laetsch DR, Bush SJ, Wragg D, Budge GE, Highet F, Dainat B, de Miranda JR, Watson M, Blaxter M, Freeman TC. Characterisation of the British honey bee metagenome. Nature Communications. 9: 4995. PMID 30478343 DOI: 10.1038/S41467-018-07426-0 |
0.759 |
|
| 2018 |
Yilmaz E, Wongkamchai S, Ramünke S, Koutsovoulos GD, Blaxter ML, Poppert S, Schaper R, von Samson-Himmelstjerna G, Krücken J. High genetic diversity in the Dirofilaria repens species complex revealed by mitochondrial genomes of feline microfilaria samples from Narathiwat, Thailand. Transboundary and Emerging Diseases. PMID 30281949 DOI: 10.1111/Tbed.13033 |
0.451 |
|
| 2018 |
Llorens C, Arcos SC, Robertson L, Ramos R, Futami R, Soriano B, Ciordia S, Careche M, González-Muñoz M, Jiménez-Ruiz Y, Carballeda-Sangiao N, Moneo I, Albar JP, Blaxter M, Navas A. Functional insights into the infective larval stage of Anisakis simplex s.s., Anisakis pegreffii and their hybrids based on gene expression patterns. Bmc Genomics. 19: 592. PMID 30086708 DOI: 10.1186/S12864-018-4970-9 |
0.337 |
|
| 2018 |
McMullan M, Rafiqi M, Kaithakottil G, Clavijo BJ, Bilham L, Orton E, Percival-Alwyn L, Ward BJ, Edwards A, Saunders DGO, Garcia Accinelli G, Wright J, Verweij W, Koutsovoulos G, Yoshida K, ... ... Blaxter M, et al. The ash dieback invasion of Europe was founded by two genetically divergent individuals. Nature Ecology & Evolution. PMID 29686237 DOI: 10.1038/S41559-018-0548-9 |
0.387 |
|
| 2018 |
McLean F, Berger D, Laetsch DR, Schwartz HT, Blaxter M. Improving the annotation of the Heterorhabditis bacteriophora genome. Gigascience. PMID 29617768 DOI: 10.1093/Gigascience/Giy034 |
0.772 |
|
| 2017 |
Conner WR, Blaxter ML, Anfora G, Ometto L, Rota-Stabelli O, Turelli M. Genome comparisons indicate recent transfer of wRi-like Wolbachia between sister species Drosophila suzukii and D. subpulchrella. Ecology and Evolution. 7: 9391-9404. PMID 29187976 DOI: 10.1002/Ece3.3449 |
0.421 |
|
| 2017 |
Szitenberg A, Salazar-Jaramillo L, Blok VC, Laetsch DR, Joseph S, Williamson VM, Blaxter ML, Lunt DH. Comparative genomics of apomictic root-knot nematodes: hybridization, ploidy, and dynamic genome change. Genome Biology and Evolution. PMID 29036290 DOI: 10.1093/Gbe/Evx201 |
0.788 |
|
| 2017 |
Laetsch DR, Blaxter ML. KinFin: Software for Taxon-Aware Analysis of Clustered Protein Sequences. G3 (Bethesda, Md.). PMID 28866640 DOI: 10.1534/G3.117.300233 |
0.759 |
|
| 2017 |
Yoshida Y, Koutsovoulos G, Laetsch DR, Stevens L, Kumar S, Horikawa DD, Ishino K, Komine S, Kunieda T, Tomita M, Blaxter M, Arakawa K. Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus. Plos Biology. 15: e2002266. PMID 28749982 DOI: 10.1371/Journal.Pbio.2002266 |
0.817 |
|
| 2017 |
Besnard F, Koutsovoulos G, Dieudonné S, Blaxter M, Félix MA. Towards Universal Forward Genetics: Using a Draft Genome Sequence of the Nematode Oscheius tipulae To Identify Mutations Affecting Vulva Development. Genetics. PMID 28630114 DOI: 10.1534/Genetics.117.203521 |
0.463 |
|
| 2017 |
Challis RJ, Kumar S, Stevens L, Blaxter M. GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species. Database : the Journal of Biological Databases and Curation. 2017. PMID 28605774 DOI: 10.1093/Database/Bax039 |
0.775 |
|
| 2017 |
Chandler J, Camberis M, Bouchery T, Blaxter M, Le Gros G, Eccles DA. Annotated mitochondrial genome with Nanopore R9 signal for Nippostrongylus brasiliensis. F1000research. 6: 56. PMID 28491281 DOI: 10.12688/F1000Research.10545.1 |
0.48 |
|
| 2017 |
Nowell RW, Elsworth B, Oostra V, Zwaan BJ, Wheat CW, Saastamoinen M, Saccheri IJ, Van't Hof AE, Wasik BR, Connahs H, Aslam ML, Kumar S, Challis RJ, Monteiro A, Brakefield PM, ... Blaxter M, et al. A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana. Gigascience. PMID 28486658 DOI: 10.1093/Gigascience/Gix035 |
0.777 |
|
| 2017 |
Blaxter M. Imagining Sisyphus happy: DNA barcoding and the unnamed majority. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27481781 DOI: 10.1098/Rstb.2015.0329 |
0.344 |
|
| 2017 |
Laetsch DR, Blaxter ML. BlobTools: Interrogation of genome assemblies F1000research. 6: 1287. DOI: 10.12688/F1000Research.12232.1 |
0.485 |
|
| 2016 |
Szitenberg A, Cha S, Opperman CH, Bird DM, Blaxter ML, Lunt DH. Genetic drift, not life history or RNAi, determine long term evolution of transposable elements. Genome Biology and Evolution. PMID 27566762 DOI: 10.1093/Gbe/Evw208 |
0.443 |
|
| 2016 |
McGrann GR, Andongabo A, Sjökvist E, Trivedi U, Dussart F, Kaczmarek M, Mackenzie A, Fountaine JM, Taylor JM, Paterson LJ, Gorniak K, Burnett F, Kanyuka K, Hammond-Kosack KE, Rudd JJ, ... Blaxter M, et al. The genome of the emerging barley pathogen Ramularia collo-cygni. Bmc Genomics. 17: 584. PMID 27506390 DOI: 10.1186/S12864-016-2928-3 |
0.337 |
|
| 2016 |
Lozano-Fernandez J, Carton R, Tanner AR, Puttick MN, Blaxter M, Vinther J, Olesen J, Giribet G, Edgecombe GD, Pisani D. A molecular palaeobiological exploration of arthropod terrestrialization. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27325830 DOI: 10.1098/Rstb.2015.0133 |
0.326 |
|
| 2016 |
Eves-van den Akker S, Laetsch DR, Thorpe P, Lilley CJ, Danchin EG, Da Rocha M, Rancurel C, Holroyd NE, Cotton JA, Szitenberg A, Grenier E, Montarry J, Mimee B, Duceppe MO, Boyes I, ... ... Blaxter M, et al. The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. Genome Biology. 17: 124. PMID 27286965 DOI: 10.1186/S13059-016-0985-1 |
0.733 |
|
| 2016 |
Nürnberger B, Lohse K, Fijarczyk A, Szymura JM, Blaxter ML. Para-allopatry in hybridising fire-bellied toads (Bombina bombina and B. variegata): Inference from transcriptome-wide coalescence analyses. Evolution; International Journal of Organic Evolution. PMID 27282112 DOI: 10.1111/Evo.12978 |
0.666 |
|
| 2016 |
Armstrong SD, Xia D, Bah GS, Krishna R, Ngangyung HF, LaCourse EJ, McSorley HJ, Kengne-Ouafo JA, Chounna-Ndongmo PW, Wanji S, Enyong PA, Taylor DW, Blaxter ML, Wastling JM, Tanya VN, et al. Stage-specific proteomes from Onchocerca ochengi, sister species of the human river blindness parasite, uncover adaptations to a nodular lifestyle. Molecular & Cellular Proteomics : McP. PMID 27226403 DOI: 10.1074/Mcp.M115.055640 |
0.318 |
|
| 2016 |
Blaxter M, Danchin A, Savakis B, Fukami-Kobayashi K, Kurokawa K, Sugano S, Roberts RJ, Salzberg SL, Wu CI. Reminder to deposit DNA sequences. Science (New York, N.Y.). 352: 780. PMID 27169596 DOI: 10.1126/Science.Aaf7672 |
0.38 |
|
| 2016 |
Yarra T, Gharbi K, Blaxter M, Peck LS, Clark MS. Characterization of the mantle transcriptome in bivalves: Pecten maximus, Mytilus edulis and Crassostrea gigas. Marine Genomics. PMID 27160853 DOI: 10.1016/J.Margen.2016.04.003 |
0.39 |
|
| 2016 |
Koutsovoulos G, Kumar S, Laetsch DR, Stevens L, Daub J, Conlon C, Maroon H, Thomas F, Aboobaker AA, Blaxter M. No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035985 DOI: 10.1073/Pnas.1600338113 |
0.813 |
|
| 2016 |
Schurch NJ, Schofield P, Gierliński M, Cole C, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson GG, Owen-Hughes T, Blaxter M, Barton GJ. How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use? Rna (New York, N.Y.). PMID 27022035 DOI: 10.1261/Rna.053959.115 |
0.367 |
|
| 2016 |
Davison A, McDowell GS, Holden JM, Johnson HF, Koutsovoulos GD, Liu MM, Hulpiau P, Van Roy F, Wade CM, Banerjee R, Yang F, Chiba S, Davey JW, Jackson DJ, Levin M, ... Blaxter ML, et al. Formin Is Associated with Left-Right Asymmetry in the Pond Snail and the Frog. Current Biology : Cb. PMID 26923788 DOI: 10.1016/J.Cub.2015.12.071 |
0.632 |
|
| 2016 |
Comandatore F, Cordaux R, Bandi C, Blaxter M, Darby A, Makepeace BL, Montagna M, Sassera D. Supergroup C Wolbachia, mutualist symbionts of filarial nematodes, have a distinct genome structure. Open Biology. 5: 150099. PMID 26631376 DOI: 10.1098/Rsob.150099 |
0.423 |
|
| 2015 |
Risse J, Thomson M, Patrick S, Blakely G, Koutsovoulos G, Blaxter M, Watson M. A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data. Gigascience. 4: 60. PMID 26640692 DOI: 10.1186/S13742-015-0101-6 |
0.43 |
|
| 2015 |
Eves-van den Akker S, Lilley CJ, Reid A, Pickup J, Anderson E, Cock PJ, Blaxter M, Urwin PE, Jones JT, Blok VC. A metagenetic approach to determine the diversity and distribution of cyst nematodes at the level of the country, the field and the individual. Molecular Ecology. 24: 5842-5851. PMID 26607216 DOI: 10.1111/Mec.13434 |
0.312 |
|
| 2015 |
Küpper C, Stocks M, Risse JE, Dos Remedios N, Farrell LL, McRae SB, Morgan TC, Karlionova N, Pinchuk P, Verkuil YI, Kitaysky AS, Wingfield JC, Piersma T, Zeng K, Slate J, ... Blaxter M, et al. A supergene determines highly divergent male reproductive morphs in the ruff. Nature Genetics. PMID 26569125 DOI: 10.1038/Ng.3443 |
0.342 |
|
| 2015 |
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM. Erratum: Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity. Nature Communications. 6: 8772. PMID 26490107 DOI: 10.1038/Ncomms9772 |
0.682 |
|
| 2015 |
Gierliński M, Cole C, Schofield P, Schurch NJ, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson G, Owen-Hughes T, Blaxter M, Barton GJ. Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment. Bioinformatics (Oxford, England). PMID 26206307 DOI: 10.1093/Bioinformatics/Btv425 |
0.314 |
|
| 2015 |
Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Gadau J, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, ... ... Blaxter ML, et al. The genomes of two key bumblebee species with primitive eusocial organization. Genome Biology. 16: 76. PMID 25908251 DOI: 10.1186/S13059-015-0623-3 |
0.435 |
|
| 2015 |
Sarkies P, Selkirk ME, Jones JT, Blok V, Boothby T, Goldstein B, Hanelt B, Ardila-Garcia A, Fast NM, Schiffer PM, Kraus C, Taylor MJ, Koutsovoulos G, Blaxter ML, Miska EA. Ancient and novel small RNA pathways compensate for the loss of piRNAs in multiple independent nematode lineages. Plos Biology. 13: e1002061. PMID 25668728 DOI: 10.1371/Journal.Pbio.1002061 |
0.305 |
|
| 2015 |
Quintana JF, Makepeace BL, Babayan SA, Ivens A, Pfarr KM, Blaxter M, Debrah A, Wanji S, Ngangyung HF, Bah GS, Tanya VN, Taylor DW, Hoerauf A, Buck AH. Extracellular Onchocerca-derived small RNAs in host nodules and blood. Parasites & Vectors. 8: 58. PMID 25623184 DOI: 10.1186/S13071-015-0656-1 |
0.314 |
|
| 2015 |
Watson M, Thomson M, Risse J, Talbot R, Santoyo-Lopez J, Gharbi K, Blaxter M. poRe: an R package for the visualization and analysis of nanopore sequencing data. Bioinformatics (Oxford, England). 31: 114-5. PMID 25173419 DOI: 10.1093/Bioinformatics/Btu590 |
0.315 |
|
| 2015 |
Overduin B, Hertz-Fowler C, Santoyo-Lopez J, Hall N, Watson M, Gharbi K, Blaxter M. Bioinformatics training for genomics – one year on F1000research. 4. DOI: 10.7490/F1000Research.1110456.1 |
0.343 |
|
| 2014 |
Liu MM, Davey JW, Jackson DJ, Blaxter ML, Davison A. A conserved set of maternal genes? Insights from a molluscan transcriptome. The International Journal of Developmental Biology. 58: 501-11. PMID 25690965 DOI: 10.1387/Ijdb.140121Ad |
0.66 |
|
| 2014 |
Heitlinger E, Taraschewski H, Weclawski U, Gharbi K, Blaxter M. Transcriptome analyses of Anguillicola crassus from native and novel hosts. Peerj. 2: e684. PMID 25469324 DOI: 10.7717/peerj.684 |
0.313 |
|
| 2014 |
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM. Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity. Nature Communications. 5: 5488. PMID 25421927 DOI: 10.1038/Ncomms6488 |
0.693 |
|
| 2014 |
Szitenberg A, Koutsovoulos G, Blaxter ML, Lunt DH. The evolution of tyrosine-recombinase elements in Nematoda. Plos One. 9: e106630. PMID 25197791 DOI: 10.1371/Journal.Pone.0106630 |
0.345 |
|
| 2014 |
Blaxter M, Koutsovoulos G. The evolution of parasitism in Nematoda. Parasitology. S26-39. PMID 24963797 DOI: 10.1017/S0031182014000791 |
0.355 |
|
| 2014 |
Blaxter M, Koutsovoulos G. The evolution of parasitism in Nematoda. Parasitology. S26-39. PMID 24963797 DOI: 10.1017/S0031182014000791 |
0.355 |
|
| 2014 |
Armstrong SD, Babayan SA, Lhermitte-Vallarino N, Gray N, Xia D, Martin C, Kumar S, Taylor DW, Blaxter ML, Wastling JM, Makepeace BL. Comparative analysis of the secretome from a model filarial nematode (Litomosoides sigmodontis) reveals maximal diversity in gravid female parasites. Molecular & Cellular Proteomics : McP. 13: 2527-44. PMID 24958169 DOI: 10.1074/Mcp.M114.038539 |
0.704 |
|
| 2014 |
Koutsovoulos G, Makepeace B, Tanya VN, Blaxter M. Palaeosymbiosis revealed by genomic fossils of Wolbachia in a strongyloidean nematode. Plos Genetics. 10: e1004397. PMID 24901418 DOI: 10.1371/journal.pgen.1004397 |
0.379 |
|
| 2014 |
Lunt DH, Kumar S, Koutsovoulos G, Blaxter ML. The complex hybrid origins of the root knot nematodes revealed through comparative genomics. Peerj. 2: e356. PMID 24860695 DOI: 10.7717/Peerj.356 |
0.766 |
|
| 2014 |
Trivedi UH, Cézard T, Bridgett S, Montazam A, Nichols J, Blaxter M, Gharbi K. Quality control of next-generation sequencing data without a reference. Frontiers in Genetics. 5: 111. PMID 24834071 DOI: 10.3389/Fgene.2014.00111 |
0.449 |
|
| 2014 |
Morgan MJ, Bass D, Bik H, Birky CW, Blaxter M, Crisp MD, Derycke S, Fitch D, Fontaneto D, Hardy CM, King AJ, Kiontke KC, Moens T, Pawlowski JW, Porazinska D, et al. A critique of Rossberg et al.: Noise obscures the genetic signal of meiobiotal ecospecies in ecogenomic datasets. Proceedings. Biological Sciences / the Royal Society. 281: 20133076. PMID 24671969 DOI: 10.1098/Rspb.2013.3076 |
0.358 |
|
| 2014 |
Blaxter M. Development: The maternal-zygotic transition revisited Current Biology. 24: R72-R75. PMID 24456979 DOI: 10.1016/J.Cub.2013.11.051 |
0.341 |
|
| 2014 |
Heitlinger E, Taraschewski H, Weclawski U, Gharbi K, Blaxter M. Transcriptome analyses of Anguillicola crassus fromnative and novel hosts Peerj. 2014. DOI: 10.7717/Peerj.684 |
0.426 |
|
| 2014 |
Koutsovoulos G, Makepeace B, Tanya VN, Blaxter M. Palaeosymbiosis Revealed by Genomic Fossils of Wolbachia in a Strongyloidean Nematode Plos Genetics. 10. DOI: 10.1371/Journal.Pgen.1004397 |
0.481 |
|
| 2013 |
Schiffer PH, Kroiher M, Kraus C, Koutsovoulos GD, Kumar S, Camps JI, Nsah NA, Stappert D, Morris K, Heger P, Altmüller J, Frommolt P, Nürnberg P, Thomas WK, Blaxter ML, et al. The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda. Bmc Genomics. 14: 923. PMID 24373391 DOI: 10.1186/1471-2164-14-923 |
0.749 |
|
| 2013 |
Kumar S, Jones M, Koutsovoulos G, Clarke M, Blaxter M. Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots. Frontiers in Genetics. 4: 237. PMID 24348509 DOI: 10.3389/Fgene.2013.00237 |
0.783 |
|
| 2013 |
Jones M, Blaxter M. AfterParty: Turning raw transcriptomes into permanent resources Bmc Bioinformatics. 14. PMID 24093729 DOI: 10.1186/1471-2105-14-301 |
0.415 |
|
| 2013 |
Martin SH, Dasmahapatra KK, Nadeau NJ, Salazar C, Walters JR, Simpson F, Blaxter M, Manica A, Mallet J, Jiggins CD. Genome-wide evidence for speciation with gene flow in Heliconius butterflies. Genome Research. 23: 1817-28. PMID 24045163 DOI: 10.1101/Gr.159426.113 |
0.504 |
|
| 2013 |
Comandatore F, Sassera D, Montagna M, Kumar S, Koutsovoulos G, Thomas G, Repton C, Babayan SA, Gray N, Cordaux R, Darby A, Makepeace B, Blaxter M. Phylogenomics and analysis of shared genes suggest a single transition to mutualism in Wolbachia of nematodes. Genome Biology and Evolution. 5: 1668-74. PMID 23960254 DOI: 10.1093/Gbe/Evt125 |
0.766 |
|
| 2013 |
Liu MM, Davey JW, Banerjee R, Han J, Yang F, Aboobaker A, Blaxter ML, Davison A. Fine mapping of the pond snail left-right asymmetry (chirality) locus using RAD-Seq and fibre-FISH. Plos One. 8: e71067. PMID 23951082 DOI: 10.1371/Journal.Pone.0071067 |
0.683 |
|
| 2013 |
Elsworth B, Jones M, Blaxter M. Badger - An accessible genome exploration environment Bioinformatics. 29: 2788-2789. PMID 23940251 DOI: 10.1093/Bioinformatics/Btt466 |
0.465 |
|
| 2013 |
Buck AH, Blaxter M. Functional diversification of Argonautes in nematodes: an expanding universe. Biochemical Society Transactions. 41: 881-6. PMID 23863149 DOI: 10.1042/Bst20130086 |
0.374 |
|
| 2013 |
Ometto L, Cestaro A, Ramasamy S, Grassi A, Revadi S, Siozios S, Moretto M, Fontana P, Varotto C, Pisani D, Dekker T, Wrobel N, Viola R, Pertot I, Cavalieri D, ... Blaxter M, et al. Linking genomics and ecology to investigate the complex evolution of an invasive Drosophila pest. Genome Biology and Evolution. 5: 745-57. PMID 23501831 DOI: 10.1093/Gbe/Evt034 |
0.445 |
|
| 2013 |
Richards PM, Liu MM, Lowe N, Davey JW, Blaxter ML, Davison A. RAD-Seq derived markers flank the shell colour and banding loci of the Cepaea nemoralis supergene. Molecular Ecology. 22: 3077-89. PMID 23496771 DOI: 10.1111/Mec.12262 |
0.624 |
|
| 2013 |
Heitlinger E, Bridgett S, Montazam A, Taraschewski H, Blaxter M. The transcriptome of the invasive eel swimbladder nematode parasite Anguillicola crassus Bmc Genomics. 14. PMID 23394720 DOI: 10.1186/1471-2164-14-87 |
0.44 |
|
| 2013 |
Davey JW, Cezard T, Fuentes-Utrilla P, Eland C, Gharbi K, Blaxter ML. Special features of RAD Sequencing data: implications for genotyping. Molecular Ecology. 22: 3151-64. PMID 23110438 DOI: 10.1111/Mec.12084 |
0.347 |
|
| 2013 |
Nadeau NJ, Martin SH, Kozak KM, Salazar C, Dasmahapatra KK, Davey JW, Baxter SW, Blaxter ML, Mallet J, Jiggins CD. Genome-wide patterns of divergence and gene flow across a butterfly radiation. Molecular Ecology. 22: 814-26. PMID 22924870 DOI: 10.1111/J.1365-294X.2012.05730.X |
0.402 |
|
| 2013 |
Gachon CMM, Heesch S, Küpper FC, Achilles-Day UEM, Brennan D, Campbell CN, Clarke A, Dorrell RG, Field J, Gontarek S, Rad Menendez C, Saxon RJ, Veszelovszki A, Guiry MD, Gharbi K, ... Blaxter M, et al. The CCAP knowledgebase: Linking protistan and cyanobacterial biological resources with taxonomic and molecular data Systematics and Biodiversity. 11: 407-413. DOI: 10.1080/14772000.2013.859641 |
0.383 |
|
| 2012 |
Kumar S, Koutsovoulos G, Kaur G, Blaxter M. Toward 959 nematode genomes. Worm. 1: 42-50. PMID 24058822 DOI: 10.4161/worm.19046 |
0.774 |
|
| 2012 |
Parkinson J, Wasmuth JD, Salinas G, Bizarro CV, Sanford C, Berriman M, Ferreira HB, Zaha A, Blaxter ML, Maizels RM, Fernández C. A transcriptomic analysis of Echinococcus granulosus larval stages: implications for parasite biology and host adaptation. Plos Neglected Tropical Diseases. 6: e1897. PMID 23209850 DOI: 10.1371/Journal.Pntd.0001897 |
0.34 |
|
| 2012 |
Wang J, Mitreva M, Berriman M, Thorne A, Magrini V, Koutsovoulos G, Kumar S, Blaxter ML, Davis RE. Silencing of germline-expressed genes by DNA elimination in somatic cells. Developmental Cell. 23: 1072-80. PMID 23123092 DOI: 10.1016/J.Devcel.2012.09.020 |
0.779 |
|
| 2012 |
Thomas GD, Rückerl D, Maskrey BH, Whitfield PD, Blaxter ML, Allen JE. The biology of nematode- and IL4Rα-dependent murine macrophage polarization in vivo as defined by RNA-Seq and targeted lipidomics. Blood. 120: e93-e104. PMID 23074280 DOI: 10.1182/Blood-2012-07-442640 |
0.309 |
|
| 2012 |
Darby AC, Armstrong SD, Bah GS, Kaur G, Hughes MA, Kay SM, Koldkjær P, Rainbow L, Radford AD, Blaxter ML, Tanya VN, Trees AJ, Cordaux R, Wastling JM, Makepeace BL. Analysis of gene expression from the Wolbachia genome of a filarial nematode supports both metabolic and defensive roles within the symbiosis. Genome Research. 22: 2467-77. PMID 22919073 DOI: 10.1101/Gr.138420.112 |
0.417 |
|
| 2012 |
Godel C, Kumar S, Koutsovoulos G, Ludin P, Nilsson D, Comandatore F, Wrobel N, Thompson M, Schmid CD, Goto S, Bringaud F, Wolstenholme A, Bandi C, Epe C, Kaminsky R, ... Blaxter M, et al. The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 26: 4650-61. PMID 22889830 DOI: 10.1096/Fj.12-205096 |
0.758 |
|
| 2012 |
Blaxter M, Denver DR. The worm in the world and the world in the worm Bmc Biology. 10. PMID 22731915 DOI: 10.1186/1741-7007-10-57 |
0.331 |
|
| 2012 |
Houston RD, Davey JW, Bishop SC, Lowe NR, Mota-Velasco JC, Hamilton A, Guy DR, Tinch AE, Thomson ML, Blaxter ML, Gharbi K, Bron JE, Taggart JB. Characterisation of QTL-linked and genome-wide restriction site-associated DNA (RAD) markers in farmed Atlantic salmon. Bmc Genomics. 13: 244. PMID 22702806 DOI: 10.1186/1471-2164-13-244 |
0.437 |
|
| 2012 |
Laetsch DR, Heitlinger EG, Taraschewski H, Nadler SA, Blaxter ML. The phylogenetics of Anguillicolidae (Nematoda: Anguillicoloidea), swimbladder parasites of eels. Bmc Evolutionary Biology. 12: 60. PMID 22559142 DOI: 10.1186/1471-2148-12-60 |
0.751 |
|
| 2012 |
Kinga Modrzynska K, Creasey A, Loewe L, Cezard T, Trindade Borges S, Martinelli A, Rodrigues L, Cravo P, Blaxter M, Carter R, Hunt P. Quantitative genome re-sequencing defines multiple mutations conferring chloroquine resistance in rodent malaria Bmc Genomics. 13. PMID 22435897 DOI: 10.1186/1471-2164-13-106 |
0.359 |
|
| 2012 |
Tyson T, O'Mahony Zamora G, Wong S, Skelton M, Daly B, Jones JT, Mulvihill ED, Elsworth B, Phillips M, Blaxter M, Burnell AM. A molecular analysis of desiccation tolerance mechanisms in the anhydrobiotic nematode Panagrolaimus superbus using expressed sequenced tags. Bmc Research Notes. 5: 68. PMID 22281184 DOI: 10.1186/1756-0500-5-68 |
0.302 |
|
| 2012 |
Nadeau NJ, Whibley A, Jones RT, Davey JW, Dasmahapatra KK, Baxter SW, Quail MA, Joron M, ffrench-Constant RH, Blaxter ML, Mallet J, Jiggins CD. Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 367: 343-53. PMID 22201164 DOI: 10.1098/Rstb.2011.0198 |
0.43 |
|
| 2012 |
Kumar S, Schiffer PH, Blaxter M. 959 Nematode Genomes: a semantic wiki for coordinating sequencing projects. Nucleic Acids Research. 40: D1295-300. PMID 22058131 DOI: 10.1093/Nar/Gkr826 |
0.77 |
|
| 2012 |
Blaxter M, Kumar S, Kaur G, Koutsovoulos G, Elsworth B. Genomics and transcriptomics across the diversity of the Nematoda Parasite Immunology. 34: 108-120. PMID 22044053 DOI: 10.1111/J.1365-3024.2011.01342.X |
0.803 |
|
| 2011 |
Kumar S, Blaxter ML. Simultaneous genome sequencing of symbionts and their hosts. Symbiosis (Philadelphia, Pa.). 55: 119-126. PMID 22448083 DOI: 10.1007/S13199-012-0154-6 |
0.78 |
|
| 2011 |
Colgan TJ, Carolan JC, Bridgett SJ, Sumner S, Blaxter ML, Brown MJ. Polyphenism in social insects: insights from a transcriptome-wide analysis of gene expression in the life stages of the key pollinator, Bombus terrestris. Bmc Genomics. 12: 623. PMID 22185240 DOI: 10.1186/1471-2164-12-623 |
0.415 |
|
| 2011 |
Hewitson JP, Harcus Y, Murray J, van Agtmaal M, Filbey KJ, Grainger JR, Bridgett S, Blaxter ML, Ashton PD, Ashford DA, Curwen RS, Wilson RA, Dowle AA, Maizels RM. Proteomic analysis of secretory products from the model gastrointestinal nematode Heligmosomoides polygyrus reveals dominance of venom allergen-like (VAL) proteins. Journal of Proteomics. 74: 1573-94. PMID 21722761 DOI: 10.1016/J.Jprot.2011.06.002 |
0.307 |
|
| 2011 |
Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, Blaxter ML. Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nature Reviews. Genetics. 12: 499-510. PMID 21681211 DOI: 10.1038/Nrg3012 |
0.488 |
|
| 2011 |
Elsworth B, Wasmuth J, Blaxter M. NEMBASE4: The nematode transcriptome resource International Journal For Parasitology. 41: 881-894. PMID 21550347 DOI: 10.1016/J.Ijpara.2011.03.009 |
0.501 |
|
| 2011 |
Jones M, Ghoorah A, Blaxter M. JMOTU and taxonerator: Turning DNA barcode sequences into annotated operational taxonomic units Plos One. 6. PMID 21541350 DOI: 10.1371/Journal.Pone.0019259 |
0.384 |
|
| 2011 |
Baxter SW, Davey JW, Johnston JS, Shelton AM, Heckel DG, Jiggins CD, Blaxter ML. Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism. Plos One. 6: e19315. PMID 21541297 DOI: 10.1371/Journal.Pone.0019315 |
0.449 |
|
| 2011 |
Lohse K, Sharanowski B, Blaxter M, Nicholls JA, Stone GN. Developing EPIC markers for chalcidoid Hymenoptera from EST and genomic data. Molecular Ecology Resources. 11: 521-9. PMID 21481210 DOI: 10.1111/J.1755-0998.2010.02956.X |
0.722 |
|
| 2011 |
Jones MO, Koutsovoulos GD, Blaxter ML. iPhy: an integrated phylogenetic workbench for supermatrix analyses. Bmc Bioinformatics. 12: 30. PMID 21261969 DOI: 10.1186/1471-2105-12-30 |
0.402 |
|
| 2011 |
Saunders NJ, Trivedi UH, Thomson ML, Doig C, Laurenson IF, Blaxter ML. Deep resequencing of serial sputum isolates of Mycobacterium tuberculosis during therapeutic failure due to poor compliance reveals stepwise mutation of key resistance genes on an otherwise stable genetic background. The Journal of Infection. 62: 212-7. PMID 21237201 DOI: 10.1016/J.Jinf.2011.01.003 |
0.343 |
|
| 2010 |
Davey JW, Davey JL, Blaxter ML, Blaxter MW. RADSeq: next-generation population genetics. Briefings in Functional Genomics. 9: 416-23. PMID 21266344 DOI: 10.1093/Bfgp/Elq031 |
0.426 |
|
| 2010 |
Blaxter M. Revealing the dark matter of the genome Science. 330: 1758-1759. PMID 21177977 DOI: 10.1126/Science.1200700 |
0.422 |
|
| 2010 |
Fonseca VG, Carvalho GR, Sung W, Johnson HF, Power DM, Neill SP, Packer M, Blaxter ML, Lambshead PJ, Thomas WK, Creer S. Second-generation environmental sequencing unmasks marine metazoan biodiversity. Nature Communications. 1: 98. PMID 20981026 DOI: 10.1038/Ncomms1095 |
0.354 |
|
| 2010 |
Kumar S, Blaxter ML. Comparing de novo assemblers for 454 transcriptome data. Bmc Genomics. 11: 571. PMID 20950480 DOI: 10.1186/1471-2164-11-571 |
0.719 |
|
| 2010 |
Hunt P, Martinelli A, Modrzynska K, Borges S, Creasey A, Rodrigues L, Beraldi D, Loewe L, Fawcett R, Kumar S, Thomson M, Trivedi U, Otto TD, Pain A, Blaxter M, et al. Experimental evolution, genetic analysis and genome re-sequencing reveal the mutation conferring artemisinin resistance in an isogenic lineage of malaria parasites. Bmc Genomics. 11: 499. PMID 20846421 DOI: 10.1186/1471-2164-11-499 |
0.748 |
|
| 2010 |
Aboobaker A, Blaxter M. The Nematode story: Hox gene loss and rapid evolution Advances in Experimental Medicine and Biology. 689: 101-110. PMID 20795325 DOI: 10.1007/978-1-4419-6673-5_7 |
0.441 |
|
| 2010 |
Rota-Stabelli O, Kayal E, Gleeson D, Daub J, Boore JL, Telford MJ, Pisani D, Blaxter M, Lavrov DV. Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda. Genome Biology and Evolution. 2: 425-40. PMID 20624745 DOI: 10.1093/Gbe/Evq030 |
0.511 |
|
| 2010 |
Green S, Studholme DJ, Laue BE, Dorati F, Lovell H, Arnold D, Cottrell JE, Bridgett S, Blaxter M, Huitema E, Thwaites R, Sharp PM, Jackson RW, Kamoun S. Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. Plos One. 5: e10224. PMID 20419105 DOI: 10.1371/Journal.Pone.0010224 |
0.45 |
|
| 2010 |
Creer S, Fonseca VG, Porazinska DL, Giblin-Davis RM, Sung W, Power DM, Packer M, Carvalho GR, Blaxter ML, Lambshead PJ, Thomas WK. Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises. Molecular Ecology. 19: 4-20. PMID 20331766 DOI: 10.1111/J.1365-294X.2009.04473.X |
0.397 |
|
| 2010 |
Acs Z, Challis RJ, Bihari P, Blaxter M, Hayward A, Melika G, Csóka G, Pénzes Z, Pujade-Villar J, Nieves-Aldrey JL, Schönrogge K, Stone GN. Phylogeny and DNA barcoding of inquiline oak gallwasps (Hymenoptera: Cynipidae) of the Western Palaearctic. Molecular Phylogenetics and Evolution. 55: 210-25. PMID 20004727 DOI: 10.1016/J.Ympev.2009.12.004 |
0.449 |
|
| 2010 |
Kegel JU, Blaxter M, Allen MJ, Metfies K, Wilson WH, Valentin K. Transcriptional host-virus interaction of Emiliania huxleyi (Haptophyceae) and EhV-86 deduced from combined analysis of expressed sequence tags and microarrays European Journal of Phycology. 45: 1-12. DOI: 10.1080/09670260903349900 |
0.353 |
|
| 2009 |
Keightley PD, Trivedi U, Thomson M, Oliver F, Kumar S, Blaxter ML. Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Research. 19: 1195-201. PMID 19439516 DOI: 10.1101/Gr.091231.109 |
0.694 |
|
| 2009 |
McTaggart SJ, Conlon C, Colbourne JK, Blaxter ML, Little TJ. The components of the Daphnia pulex immune system as revealed by complete genome sequencing. Bmc Genomics. 10: 175. PMID 19386092 DOI: 10.1186/1471-2164-10-175 |
0.483 |
|
| 2009 |
Parkinson J, Blaxter M. Expressed sequence tags: an overview. Methods in Molecular Biology (Clifton, N.J.). 533: 1-12. PMID 19277571 DOI: 10.1007/978-1-60327-136-3_1 |
0.435 |
|
| 2009 |
Wasmuth J, Blaxter M. Obtaining accurate translations from expressed sequence tags Methods in Molecular Biology. 533: 221-239. PMID 19277570 DOI: 10.1007/978-1-60327-136-3_10 |
0.459 |
|
| 2009 |
Schmid R, Blaxter M. EST processing: From trace to sequence Methods in Molecular Biology. 533: 189-220. PMID 19277557 DOI: 10.1007/978-1-60327-136-3_9 |
0.418 |
|
| 2009 |
Bavan S, Straub VA, Blaxter ML, Ennion SJ. A P2X receptor from the tardigrade species Hypsibius dujardini with fast kinetics and sensitivity to zinc and copper. Bmc Evolutionary Biology. 9: 17. PMID 19154569 DOI: 10.1186/1471-2148-9-17 |
0.315 |
|
| 2008 |
Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EG, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, Caillaud MC, Coutinho PM, Dasilva C, De Luca F, Deau F, ... ... Blaxter M, et al. Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26: 909-15. PMID 18660804 DOI: 10.1038/Nbt.1482 |
0.473 |
|
| 2008 |
Wasmuth J, Schmid R, Hedley A, Blaxter M. On the extent and origins of genic novelty in the phylum nematoda Plos Neglected Tropical Diseases. 2. PMID 18596977 DOI: 10.1371/Journal.Pntd.0000258 |
0.431 |
|
| 2008 |
Svendsen C, Owen J, Kille P, Wren J, Jonker MJ, Headley BA, Morgan AJ, Blaxter M, Stürzenbaum SR, Hankard PK, Lister LJ, Spurgeon DJ. Comparative transcriptomic responses to chronic cadmium, fluoranthene, and atrazine exposure in Lumbricus rubellus. Environmental Science & Technology. 42: 4208-14. PMID 18589989 DOI: 10.1021/Es702745D |
0.305 |
|
| 2008 |
Owen J, Hedley BA, Svendsen C, Wren J, Jonker MJ, Hankard PK, Lister LJ, Stürzenbaum SR, Morgan AJ, Spurgeon DJ, Blaxter ML, Kille P. Transcriptome profiling of developmental and xenobiotic responses in a keystone soil animal, the oligochaete annelid Lumbricus rubellus. Bmc Genomics. 9: 266. PMID 18522720 DOI: 10.1186/1471-2164-9-266 |
0.354 |
|
| 2008 |
Schmid R, Blaxter ML. annot8r: GO, EC and KEGG annotation of EST datasets. Bmc Bioinformatics. 9: 180. PMID 18400082 DOI: 10.1186/1471-2105-9-180 |
0.49 |
|
| 2008 |
Papanicolaou A, Gebauer-Jung S, Blaxter ML, Owen McMillan W, Jiggins CD. ButterflyBase: a platform for lepidopteran genomics. Nucleic Acids Research. 36: D582-7. PMID 17933781 DOI: 10.1093/Nar/Gkm853 |
0.537 |
|
| 2008 |
Herrera A, Cockell CS, Self S, Blaxter M, Reitner J, Arp G, Dröse W, Thorsteinsson T, Tindle A. Bacterial colonization and weathering of terrestrial obsidian in Iceland Geomicrobiology Journal. 25: 25-37. DOI: 10.1080/01490450701828982 |
0.327 |
|
| 2007 |
Blaxter M. Symbiont Genes in Host Genomes: Fragments with a Future? Cell Host and Microbe. 2: 211-213. PMID 18005738 DOI: 10.1016/J.Chom.2007.09.008 |
0.418 |
|
| 2007 |
Anthony A, Blaxter M. Association of the Matrix Attachment Region Recognition Signature with coding regions in Caenorhabditis elegans Bmc Genomics. 8. PMID 18005410 DOI: 10.1186/1471-2164-8-418 |
0.445 |
|
| 2007 |
Ghedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, ... ... Blaxter ML, et al. Draft genome of the filarial nematode parasite Brugia malayi. Science (New York, N.Y.). 317: 1756-60. PMID 17885136 DOI: 10.1126/Science.1145406 |
0.506 |
|
| 2007 |
Jones M, Gantenbein B, Fet V, Blaxter M. The effect of model choice on phylogenetic inference using mitochondrial sequence data: Lessons from the scorpions Molecular Phylogenetics and Evolution. 43: 583-595. PMID 17275351 DOI: 10.1016/J.Ympev.2006.11.017 |
0.434 |
|
| 2007 |
Meldal BH, Debenham NJ, De Ley P, De Ley IT, Vanfleteren JR, Vierstraete AR, Bert W, Borgonie G, Moens T, Tyler PA, Austen MC, Blaxter ML, Rogers AD, Lambshead PJ. An improved molecular phylogeny of the Nematoda with special emphasis on marine taxa. Molecular Phylogenetics and Evolution. 42: 622-36. PMID 17084644 DOI: 10.1016/J.Ympev.2006.08.025 |
0.43 |
|
| 2006 |
Jones M, Blaxter M. TaxMan: A taxonomic database manager Bmc Bioinformatics. 7. PMID 17176465 DOI: 10.1186/1471-2105-7-536 |
0.449 |
|
| 2006 |
Guiliano DB, Blaxter ML. Operon conservation and the evolution of trans-splicing in the phylum Nematoda. Plos Genetics. 2: e198. PMID 17121468 DOI: 10.1371/Journal.Pgen.0020198 |
0.349 |
|
| 2006 |
Fenn K, Conlon C, Jones M, Quail MA, Holroyd NE, Parkhill J, Blaxter M. Phylogenetic relationships of the Wolbachia of nematodes and arthropods. Plos Pathogens. 2: e94. PMID 17040125 DOI: 10.1371/journal.ppat.0020094 |
0.464 |
|
| 2006 |
Cutter AD, Wasmuth JD, Blaxter ML. The evolution of biased codon and amino acid usage in nematode genomes. Molecular Biology and Evolution. 23: 2303-15. PMID 16936139 DOI: 10.1093/Molbev/Msl097 |
0.435 |
|
| 2006 |
Heider U, Blaxter M, Hoerauf A, Pfarr KM. Differential display of genes expressed in the filarial nematode Litomosoides sigmodontis reveals a putative phosphate permease up-regulated after depletion of Wolbachia endobacteria. International Journal of Medical Microbiology : Ijmm. 296: 287-99. PMID 16616613 DOI: 10.1016/J.Ijmm.2005.12.019 |
0.335 |
|
| 2006 |
Fenn K, Blaxter M. Wolbachia genomes: Revealing the biology of parasitism and mutualism Trends in Parasitology. 22: 60-65. PMID 16406333 DOI: 10.1016/J.Pt.2005.12.012 |
0.504 |
|
| 2006 |
Blaxter M, Mann J, Chapman T, Thomas F, Whitton C, Floyd R, Abebe E. Defining operational taxonomic units using DNA barcode data. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 360: 1935-43. PMID 16214751 DOI: 10.1098/Rstb.2005.1725 |
0.356 |
|
| 2006 |
Fenn K, Conlon C, Jones M, Quail MA, Holroyd NE, Parkhill J, Blaxter M. Phylogenetic relationships of the Wolbachia of nematodes and arthropods Plos Pathogens. 2: 0887-0899. DOI: 10.1371/Journal.Ppat.0020094 |
0.552 |
|
| 2005 |
Bird DM, Blaxter ML, McCarter JP, Mitreva M, Sternberg PW, Thomas WK. A white paper on nematode comparative genomics. Journal of Nematology. 37: 408-16. PMID 19262884 |
0.435 |
|
| 2005 |
Ford L, Guiliano DB, Oksov Y, Debnath AK, Liu J, Williams SA, Blaxter ML, Lustigman S. Characterization of a novel filarial serine protease inhibitor, Ov-SPI-1, from Onchocerca volvulus, with potential multifunctional roles during development of the parasite. The Journal of Biological Chemistry. 280: 40845-56. PMID 16186127 DOI: 10.1074/Jbc.M504434200 |
0.327 |
|
| 2005 |
Mitreva M, Blaxter ML, Bird DM, McCarter JP. Comparative genomics of nematodes. Trends in Genetics : Tig. 21: 573-81. PMID 16099532 DOI: 10.1016/J.Tig.2005.08.003 |
0.558 |
|
| 2005 |
Papanicolaou A, Joron M, McMillan WO, Blaxter ML, Jiggins CD. Genomic tools and cDNA derived markers for butterflies. Molecular Ecology. 14: 2883-97. PMID 16029486 DOI: 10.1111/J.1365-294X.2005.02609.X |
0.5 |
|
| 2005 |
Davison A, Blaxter ML. An expressed sequence tag survey of gene expression in the pond snail Lymnaea stagnalis, an intermediate vector of trematodes [corrected]. Parasitology. 130: 539-52. PMID 15991497 DOI: 10.1017/S0031182004006791 |
0.712 |
|
| 2005 |
Jones M, Blaxter M. Evolutionary biology: animal roots and shoots. Nature. 434: 1076-7. PMID 15858555 DOI: 10.1038/4341076A |
0.449 |
|
| 2005 |
Geldhof P, Whitton C, Gregory WF, Blaxter M, Knox DP. Characterisation of the two most abundant genes in the Haemonchus contortus expressed sequence tag dataset. International Journal For Parasitology. 35: 513-22. PMID 15826643 DOI: 10.1016/J.Ijpara.2005.02.009 |
0.381 |
|
| 2005 |
Davison A, Blaxter M. Ancient origin of glycosyl hydrolase family 9 cellulase genes. Molecular Biology and Evolution. 22: 1273-84. PMID 15703240 DOI: 10.1093/Molbev/Msi107 |
0.694 |
|
| 2005 |
Foster J, Baldo L, Blaxter M, Henkle-Dührsen K, Whitton C, Slatko B, Bandi C. The bacterial catalase from filarial DNA preparations derives from common pseudomonad contaminants and not from Wolbachia endosymbionts. Parasitology Research. 94: 141-6. PMID 15322925 DOI: 10.1007/S00436-004-1195-4 |
0.424 |
|
| 2005 |
Cook AA, Bhadury P, Debenham NJ, Meldal BHM, Blaxter ML, Smerdon GR, Austen MC, Lambshead PJD, Rogers AD. Denaturing gradient gel electrophoresis (DGGE) as a tool for identification of marine nematodes Marine Ecology Progress Series. 291: 103-113. DOI: 10.3354/Meps291103 |
0.404 |
|
| 2005 |
Wasmuth J, Schmid R, Anthony A, Parkinson J, Blaxter M. Exploring Parasite Gene Space Bmc Bioinformatics. 6: P27. DOI: 10.1186/1471-2105-6-S3-P27 |
0.537 |
|
| 2004 |
Wasmuth JD, Blaxter ML. prot4EST: translating expressed sequence tags from neglected genomes. Bmc Bioinformatics. 5: 187. PMID 15571632 DOI: 10.1186/1471-2105-5-187 |
0.47 |
|
| 2004 |
Parkinson J, Mitreva M, Whitton C, Thomson M, Daub J, Martin J, Schmid R, Hall N, Barrell B, Waterston RH, McCarter JP, Blaxter ML. A transcriptomic analysis of the phylum Nematoda. Nature Genetics. 36: 1259-67. PMID 15543149 DOI: 10.1038/Ng1472 |
0.512 |
|
| 2004 |
Guiliano DB, Hong X, McKerrow JH, Blaxter ML, Oksov Y, Liu J, Ghedin E, Lustigman S. A gene family of cathepsin L-like proteases of filarial nematodes are associated with larval molting and cuticle and eggshell remodeling. Molecular and Biochemical Parasitology. 136: 227-42. PMID 15478801 DOI: 10.1016/J.Molbiopara.2004.03.015 |
0.382 |
|
| 2004 |
Whitton C, Daub J, Quail M, Hall N, Foster J, Ware J, Ganatra M, Slatko B, Barrell B, Blaxter M. A genome sequence survey of the filarial nematode Brugia malayi: repeats, gene discovery, and comparative genomics. Molecular and Biochemical Parasitology. 137: 215-27. PMID 15383292 DOI: 10.1016/J.Molbiopara.2004.05.013 |
0.531 |
|
| 2004 |
Blaxter ML. The promise of a DNA taxonomy. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 359: 669-79. PMID 15253352 DOI: 10.1098/Rstb.2003.1447 |
0.401 |
|
| 2004 |
Blaxter M, Elsworth B, Daub J. DNA taxonomy of a neglected animal phylum: an unexpected diversity of tardigrades. Proceedings. Biological Sciences. S189-92. PMID 15252980 DOI: 10.1098/Rsbl.2003.0130 |
0.364 |
|
| 2004 |
Blaxter M. Opinion piece. Genome sequencing: time to widen our horizons. Briefings in Functional Genomics & Proteomics. 1: 7-9. PMID 15251062 DOI: 10.1093/Bfgp/1.1.7 |
0.458 |
|
| 2004 |
Harcus YM, Parkinson J, Fernández C, Daub J, Selkirk ME, Blaxter ML, Maizels RM. Signal sequence analysis of expressed sequence tags from the nematode Nippostrongylus brasiliensis and the evolution of secreted proteins in parasites. Genome Biology. 5: R39. PMID 15186490 DOI: 10.1186/Gb-2004-5-6-R39 |
0.419 |
|
| 2004 |
Parkinson J, Blaxter M. Expressed sequence tags: analysis and annotation. Methods in Molecular Biology (Clifton, N.J.). 270: 93-126. PMID 15153624 DOI: 10.1385/1-59259-793-9:093 |
0.419 |
|
| 2004 |
Whitton C, Daub J, Thompson M, Blaxter M. Expressed sequence tags: medium-throughput protocols. Methods in Molecular Biology (Clifton, N.J.). 270: 75-92. PMID 15153623 DOI: 10.1385/1-59259-793-9:075 |
0.482 |
|
| 2004 |
Foster JM, Kumar S, Ganatra MB, Kamal IH, Ware J, Ingram J, Pope-Chappell J, Guiliano D, Whitton C, Daub J, Blaxter ML, Slatko BE. Construction of bacterial artificial chromosome libraries from the parasitic nematode Brugia malayi and physical mapping of the genome of its Wolbachia endosymbiont. International Journal For Parasitology. 34: 733-46. PMID 15111095 DOI: 10.1016/J.Ijpara.2004.02.001 |
0.517 |
|
| 2004 |
Aboobaker AA, Blaxter ML. Functional genomics for parasitic nematodes and platyhelminths. Trends in Parasitology. 20: 178-84. PMID 15099557 DOI: 10.1016/J.Pt.2004.01.016 |
0.433 |
|
| 2004 |
Parkinson J, Anthony A, Wasmuth J, Schmid R, Hedley A, Blaxter M. PartiGene--constructing partial genomes. Bioinformatics (Oxford, England). 20: 1398-404. PMID 14988115 DOI: 10.1093/Bioinformatics/Bth101 |
0.477 |
|
| 2004 |
Parkinson J, Whitton C, Schmid R, Thomson M, Blaxter M. NEMBASE: a resource for parasitic nematode ESTs. Nucleic Acids Research. 32: D427-30. PMID 14681449 DOI: 10.1093/Nar/Gkh018 |
0.491 |
|
| 2004 |
Aboobaker A, Blaxter M. Hox gene evolution in nematodes: novelty conserved. Current Opinion in Genetics & Development. 13: 593-8. PMID 14638320 DOI: 10.1016/J.Gde.2003.10.009 |
0.349 |
|
| 2004 |
Fenn K, Blaxter M. Are filarial nematode Wolbachia obligate mutualist symbionts? Trends in Ecology and Evolution. 19: 163-166. DOI: 10.1016/J.Tree.2004.01.002 |
0.328 |
|
| 2003 |
Blaxter ML. Nematoda: genes, genomes and the evolution of parasitism. Advances in Parasitology. 54: 101-95. PMID 14711085 DOI: 10.1016/S0065-308X(03)54003-9 |
0.492 |
|
| 2003 |
Blaxter M. Comparative genomics: two worms are better than one. Nature. 426: 395-6. PMID 14647365 DOI: 10.1038/426395A |
0.481 |
|
| 2003 |
Parkinson J, Mitreva M, Hall N, Blaxter M, McCarter JP. 400000 nematode ESTs on the Net. Trends in Parasitology. 19: 283-6. PMID 12855373 DOI: 10.1016/S1471-4922(03)00132-6 |
0.454 |
|
| 2003 |
Aboobaker AA, Blaxter ML. Use of RNA interference to investigate gene function in the human filarial nematode parasite Brugia malayi. Molecular and Biochemical Parasitology. 129: 41-51. PMID 12798505 DOI: 10.1016/S0166-6851(03)00092-6 |
0.332 |
|
| 2003 |
Kenyon F, Welsh M, Parkinson J, Whitton C, Blaxter ML, Knox DP. Expressed sequence tag survey of gene expression in the scab mite Psoroptes ovis--allergens, proteases and free-radical scavengers. Parasitology. 126: 451-60. PMID 12793649 DOI: 10.1017/S0031182003003044 |
0.389 |
|
| 2003 |
Parkinson J, Blaxter M. SimiTri--visualizing similarity relationships for groups of sequences. Bioinformatics (Oxford, England). 19: 390-5. PMID 12584125 DOI: 10.1093/Bioinformatics/Btf870 |
0.461 |
|
| 2003 |
Aboobaker AA, Blaxter ML. Hox Gene Loss during Dynamic Evolution of the Nematode Cluster. Current Biology : Cb. 13: 37-40. PMID 12526742 DOI: 10.1016/S0960-9822(02)01399-4 |
0.425 |
|
| 2003 |
Stürzenbaum SR, Parkinson J, Blaxter M, Morgan A, Kille P, Georgiev O. The earthworm Expressed Sequence Tag project Pedobiologia. 47: 447-451. DOI: 10.1078/0031-4056-00211 |
0.413 |
|
| 2003 |
Blaxter M. Teaching genomics: confusion and clarity Nature Genetics. 35: 111-111. DOI: 10.1038/Ng1003-111 |
0.42 |
|
| 2003 |
Sturzenbaum S, Parkinson J, Blaxter M, Morgan A, Kille P, Georgiev O. The earthworm Expressed Sequence Tag projectThe 7th international symposium on earthworm ecology · Cardiff · Wales · 2002 Pedobiologia. 47: 447-451. DOI: 10.1016/S0031-4056(04)70220-6 |
0.415 |
|
| 2002 |
Gomez-Escobar N, Gregory WF, Britton C, Murray L, Corton C, Hall N, Daub J, Blaxter ML, Maizels RM. Abundant larval transcript-1 and -2 genes from Brugia malayi: diversity of genomic environments but conservation of 5' promoter sequences functional in Caenorhabditis elegans. Molecular and Biochemical Parasitology. 125: 59-71. PMID 12467974 DOI: 10.1016/S0166-6851(02)00219-0 |
0.476 |
|
| 2002 |
Parkinson J, Guiliano DB, Blaxter M. Making sense of EST sequences by CLOBBing them. Bmc Bioinformatics. 3: 31. PMID 12398795 DOI: 10.1186/1471-2105-3-31 |
0.39 |
|
| 2002 |
Dorris M, Viney ME, Blaxter ML. Molecular phylogenetic analysis of the genus Strongyloides and related nematodes. International Journal For Parasitology. 32: 1507-17. PMID 12392916 DOI: 10.1016/S0020-7519(02)00156-X |
0.411 |
|
| 2002 |
Guiliano DB, Hall N, Jones SJ, Clark LN, Corton CH, Barrell BG, Blaxter ML. Conservation of long-range synteny and microsynteny between the genomes of two distantly related nematodes. Genome Biology. 3: RESEARCH0057. PMID 12372145 DOI: 10.1186/Gb-2002-3-10-Research0057 |
0.509 |
|
| 2002 |
Floyd R, Abebe E, Papert A, Blaxter M. Molecular barcodes for soil nematode identification. Molecular Ecology. 11: 839-50. PMID 11972769 DOI: 10.1046/J.1365-294X.2002.01485.X |
0.367 |
|
| 2002 |
Blaxter M, Daub J, Guiliano D, Parkinson J, Whitton C. The Brugia malayi genome project: expressed sequence tags and gene discovery Transactions of the Royal Society of Tropical Medicine and Hygiene. 96: 7-17. PMID 11925998 DOI: 10.1016/S0035-9203(02)90224-5 |
0.439 |
|
| 2002 |
Ware J, Moran L, Foster J, Posfai J, Vincze T, Guiliano D, Blaxter M, Eisen J, Slatko B. Sequencing and analysis of a 63 kb bacterial artificial chromosome insert from the Wolbachia endosymbiont of the human filarial parasite Brugia malayi. International Journal For Parasitology. 32: 159-66. PMID 11812492 DOI: 10.1016/S0020-7519(01)00367-8 |
0.517 |
|
| 2001 |
Maizels RM, Blaxter ML, Scott AL. Immunological genomics of Brugia malayi: filarial genes implicated in immune evasion and protective immunity. Parasite Immunology. 23: 327-44. PMID 11472553 DOI: 10.1046/J.1365-3024.2001.00397.X |
0.448 |
|
| 2000 |
Blaxter ML, Maizels RM, Kennedy MW. Parasitic helminths from genomes to vaccines II: Edinburgh, July 1999. Parasite Immunology. 22: 371-2. PMID 11032530 DOI: 10.1046/J.1365-3024.2000.00320.X |
0.349 |
|
| 2000 |
Allen JE, Daub J, Guiliano D, McDonnell A, Lizotte-Waniewski M, Taylor DW, Blaxter M. Analysis of genes expressed at the infective larval stage validates utility of Litomosoides sigmodontis as a murine model for filarial vaccine development. Infection and Immunity. 68: 5454-8. PMID 10948183 DOI: 10.1128/Iai.68.9.5454-5458.2000 |
0.343 |
|
| 2000 |
Dorris M, Blaxter M. The small subunit ribosomal RNA sequence of Strongyloides stercoralis. International Journal For Parasitology. 30: 939-41. PMID 10927084 DOI: 10.1016/S0020-7519(00)00071-0 |
0.418 |
|
| 2000 |
Williams SA, Lizotte-Waniewski MR, Foster J, Guiliano D, Daub J, Scott AL, Slatko B, Blaxter ML. The filarial genome project: analysis of the nuclear, mitochondrial and endosymbiont genomes of Brugia malayi. International Journal For Parasitology. 30: 411-9. PMID 10731564 DOI: 10.1016/S0020-7519(00)00014-X |
0.532 |
|
| 2000 |
Blaxter M. Genes and genomes of Necator americanus and related hookworms. International Journal For Parasitology. 30: 347-55. PMID 10731559 DOI: 10.1016/S0020-7519(99)00198-8 |
0.429 |
|
| 2000 |
Daub J, Loukas A, Pritchard DI, Blaxter M. A survey of genes expressed in adults of the human hookworm, Necator americanus Parasitology. 120: 171-184. PMID 10726278 DOI: 10.1017/S0031182099005375 |
0.37 |
|
| 2000 |
Aboobaker AA, Blaxter ML. Medical significance of Caenorhabditis elegans. Annals of Medicine. 32: 23-30. PMID 10711574 DOI: 10.3109/07853890008995906 |
0.402 |
|
| 2000 |
Burr AH, Hunt P, Wagar DR, Dewilde S, Blaxter ML, Vanfleteren JR, Moens L. A hemoglobin with an optical function. The Journal of Biological Chemistry. 275: 4810-5. PMID 10671515 DOI: 10.1074/Jbc.275.7.4810 |
0.309 |
|
| 2000 |
Ley PD, Dorris M, Blaxter M. Patterns and processes in the evolution of animal parasitic nematodes Nematology. 2: 43-55. DOI: 10.1163/156854100508881 |
0.321 |
|
| 1999 |
Slatko BE, O'Neill SL, Scott AL, Werren JL, Blaxter ML. The Wolbachia Genome Consortium. Microbial & Comparative Genomics. 4: 161-5. PMID 10587943 DOI: 10.1089/Omi.1.1999.4.161 |
0.459 |
|
| 1999 |
Blaxter M, Ivens A. Reports from the cutting edge of parasitic genome analysis. Parasitology Today. 15: 430-431. PMID 10511682 DOI: 10.1016/S0169-4758(99)01541-0 |
0.517 |
|
| 1999 |
Blaxter M, Aslett M, Guiliano D, Daub J. Parasitic helminth genomics Parasitology. 118: 39-51. PMID 10466136 DOI: 10.1017/S0031182099004060 |
0.511 |
|
| 1999 |
Williams SA, Johnston DA, Aslett M, Bierwert L, Blaxter ML, Daub J, Foster J, Ganatra M, Guiliano D, Haynes S, Jayaraman K, Kamal IH, Kannan K, Laney SJ, Li W, et al. Helminth genome analysis: The current status of the filarial and schistosome genome projects Parasitology. 118: S19-S38. PMID 10466135 DOI: 10.1017/S0031182099004473 |
0.505 |
|
| 1999 |
Guiliano D, Ganatra M, Ware J, Parrot J, Daub J, Moran L, Brennecke H, Foster JM, Supali T, Blaxter M, Scott AL, Williams SA, Slatko BE. Chemiluminescent detection of sequential DNA hybridizations to high- density, filter-arrayed cDNA libraries: A subtraction method for novel gene discovery Biotechniques. 27: 146-152. PMID 10407677 DOI: 10.2144/99271Rr03 |
0.335 |
|
| 1999 |
Dorris M, De Ley P, Blaxter ML. Molecular analysis of nematode diversity and the evolution of parasitism. Parasitology Today (Personal Ed.). 15: 188-93. PMID 10322352 DOI: 10.1016/S0169-4758(99)01439-8 |
0.378 |
|
| 1999 |
Johnston DA, Blaxter ML, Degrave WM, Foster J, Ivens AC, Melville SE. Genomics and the biology of parasites. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 21: 131-47. PMID 10193187 DOI: 10.1002/(Sici)1521-1878(199902)21:2<131::Aid-Bies7>3.0.Co;2-I |
0.41 |
|
| 1999 |
Hoerauf A, Nissen-Pähle K, Schmetz C, Henkle-Dührsen K, Blaxter ML, Büttner DW, Gallin MY, Al-Qaoud KM, Lucius R, Fleischer B. Tetracycline therapy targets intracellular bacteria in the filarial nematode Litomosoides sigmodontis and results in filarial infertility. The Journal of Clinical Investigation. 103: 11-8. PMID 9884329 DOI: 10.1172/Jci4768 |
0.32 |
|
| 1999 |
Dewilde S, Blaxter M, Van Hauwaert ML, Van Houte K, Pesce A, Griffon N, Kiger L, Marden MC, Vermeire S, Vanfleteren J, Esmans E, Moens L. Structural, functional, and genetic characterization of Gastrophilus hemoglobin. The Journal of Biological Chemistry. 273: 32467-74. PMID 9829978 DOI: 10.1074/Jbc.273.49.32467 |
0.347 |
|
| 1999 |
M.Webster J, Beckenbach K, Blaxter M. Phylogeny of Bursaphelenchus species derived from analysis of ribosomal internal transcribed spacer DNA sequences Nematology. 1: 539-548. DOI: 10.1163/156854199508531 |
0.347 |
|
| 1998 |
Maizels R, Blaxter M, Kennedy M. Parasitic helminths: from genomes to vaccines. Parasitology Today. 14: 131-132. PMID 17040726 DOI: 10.1016/S0169-4758(97)01219-2 |
0.365 |
|
| 1998 |
Bandi C, Anderson TJ, Genchi C, Blaxter ML. Phylogeny of Wolbachia in filarial nematodes. Proceedings. Biological Sciences / the Royal Society. 265: 2407-13. PMID 9921679 DOI: 10.1098/Rspb.1998.0591 |
0.418 |
|
| 1998 |
Blaxter M. Caenorhabditis elegans Is a Nematode Science. 282: 2041-2046. PMID 9851921 DOI: 10.1126/Science.282.5396.2041 |
0.427 |
|
| 1998 |
Henkle-Dührsen K, Eckelt VH, Wildenburg G, Blaxter M, Walter RD. Gene structure, activity and localization of a catalase from intracellular bacteria in Onchocerca volvulus. Molecular and Biochemical Parasitology. 96: 69-81. PMID 9851608 DOI: 10.1016/S0166-6851(98)00109-1 |
0.361 |
|
| 1998 |
Bürglin TR, Lobos E, Blaxter ML. Caenorhabditis elegans as a model for parasitic nematodes. International Journal For Parasitology. 28: 395-411. PMID 9559358 DOI: 10.1016/S0020-7519(97)00208-7 |
0.498 |
|
| 1998 |
Blaxter ML, De Ley P, Garey JR, Liu LX, Scheldeman P, Vierstraete A, Vanfleteren JR, Mackey LY, Dorris M, Frisse LM, Vida JT, Thomas WK. A molecular evolutionary framework for the phylum Nematoda. Nature. 392: 71-5. PMID 9510248 DOI: 10.1038/32160 |
0.403 |
|
| 1997 |
Blaxter ML, Guiliano DB, Scott AL, Williams SA. A unified nomenclature for filarial genes. Parasitology Today (Personal Ed.). 13: 416-7. PMID 15275142 DOI: 10.1016/S0169-4758(97)01140-X |
0.32 |
|
| 1997 |
Gregory WF, Blaxter ML, Maizels RM. Differentially expressed, abundant trans-spliced cDNAs from larval Brugia malayi. Molecular and Biochemical Parasitology. 87: 85-95. PMID 9233676 DOI: 10.1016/S0166-6851(97)00050-9 |
0.322 |
|
| 1997 |
Blaxter M, Aslett M. Internet resources for the parasite genome projects. Trends in Genetics : Tig. 13: 40-1. PMID 9009847 DOI: 10.1016/S0168-9525(96)60046-8 |
0.415 |
|
| 1997 |
Blaxter M, Bird D. 30 Parasitic Nematodes Cold Spring Harbor Monograph Archive. 33: 851-878. DOI: 10.1101/087969532.33.851 |
0.372 |
|
| 1997 |
Koltai H, Spiegel Y, Blaxter ML. Regulated use of an alternative spliced leader exon in the plant parasitic nematode Meloidogyne javanica1Note: Nucleotide sequences reported in this paper have been deposited in Genbank with accession numbers U78985–U79007.1 Molecular and Biochemical Parasitology. 86: 107-110. DOI: 10.1016/S0166-6851(97)02841-7 |
0.352 |
|
| 1996 |
Blaxter ML, Raghavan N, Ghosh I, Guiliano D, Lu W, Williams SA, Slatko B, Scott AL. Genes expressed in Brugia malayi infective third stage larvae. Molecular and Biochemical Parasitology. 77: 77-93. PMID 8784774 DOI: 10.1016/0166-6851(96)02571-6 |
0.435 |
|
| 1996 |
Dewilde S, Blaxter M, Van Hauwaert ML, Vanfleteren J, Esmans EL, Marden M, Griffon N, Moens L. Globin and globin gene structure of the nerve myoglobin of Aphrodite aculeata. The Journal of Biological Chemistry. 271: 19865-70. PMID 8702697 DOI: 10.1074/Jbc.271.33.19865 |
0.334 |
|
| 1996 |
Moens L, Vanfleteren J, Van de Peer Y, Peeters K, Kapp O, Czeluzniak J, Goodman M, Blaxter M, Vinogradov S. Globins in nonvertebrate species: dispersal by horizontal gene transfer and evolution of the structure-function relationships. Molecular Biology and Evolution. 13: 324-33. PMID 8587498 DOI: 10.1093/Oxfordjournals.Molbev.A025592 |
0.369 |
|
| 1996 |
Blaxter M, Liu L. Nematode spliced leaders — ubiquity, evolution and utility International Journal For Parasitology. 26: 1025-1033. DOI: 10.1016/S0020-7519(96)80002-6 |
0.329 |
|
| 1995 |
Tree TI, Gillespie AJ, Shepley KJ, Blaxter ML, Tuan RS, Bradley JE. Characterisation of an immunodominant glycoprotein antigen of Onchocerca volvulus with homologues in other filarial nematodes and Caenorhabditis elegans. Molecular and Biochemical Parasitology. 69: 185-95. PMID 7770083 DOI: 10.1016/0166-6851(94)00204-Z |
0.331 |
|
| 1995 |
Gems D, Ferguson CJ, Robertson BD, Nieves R, Page AP, Blaxter ML, Maizels RM. An abundant, trans-spliced mRNA from Toxocara canis infective larvae encodes a 26-kDa protein with homology to phosphatidylethanolamine-binding proteins. The Journal of Biological Chemistry. 270: 18517-22. PMID 7629180 DOI: 10.1074/Jbc.270.31.18517 |
0.353 |
|
| 1995 |
Blaxter M. The filarial genome network Parasitology Today. 11: 441-442. DOI: 10.1016/0169-4758(95)80050-6 |
0.363 |
|
| 1994 |
Vanfleteren JR, Van de Peer Y, Blaxter ML, Tweedie SA, Trotman C, Lu L, Van Hauwaert ML, Moens L. Molecular genealogy of some nematode taxa as based on cytochrome c and globin amino acid sequences. Molecular Phylogenetics and Evolution. 3: 92-101. PMID 8075836 DOI: 10.1006/Mpev.1994.1012 |
0.418 |
|
| 1994 |
Blaxter ML, Ingram L, Tweedie S. Sequence, expression and evolution of the globins of the parasitic nematode Nippostrongylus brasiliensis. Molecular and Biochemical Parasitology. 68: 1-14. PMID 7891734 DOI: 10.1016/0166-6851(94)00127-8 |
0.387 |
|
| 1993 |
Blaxter ML. Nemoglobins: divergent nematode globins. Parasitology Today (Personal Ed.). 9: 353-60. PMID 15463668 DOI: 10.1016/0169-4758(93)90082-Q |
0.333 |
|
| 1992 |
Blaxter M. Patenting of genes. Nature. 355: 104-104. PMID 1729644 DOI: 10.1038/355104B0 |
0.312 |
|
| 1992 |
Cookson E, Blaxter ML, Selkirk ME. Identification of the major soluble cuticular glycoprotein of lymphatic filarial nematode parasites (gp29) as a secretory homolog of glutathione peroxidase. Proceedings of the National Academy of Sciences of the United States of America. 89: 5837-41. PMID 1631065 DOI: 10.1073/Pnas.89.13.5837 |
0.303 |
|
| 1990 |
MacFarlane J, Blaxter ML, Bishop RP, Miles MA, Kelly JM. Identification and characterisation of a Leishmania donovani antigen belonging to the 70-kDa heat-shock protein family. European Journal of Biochemistry / Febs. 190: 377-84. PMID 2163842 DOI: 10.1111/J.1432-1033.1990.Tb15586.X |
0.352 |
|
| 1987 |
Kelly JM, Blaxter ML. Rapid characterization of recombinant lambdagt11 clones expressing parasite antigens. Parasitology Today (Personal Ed.). 3: 315-7. PMID 15462876 DOI: 10.1016/0169-4758(87)90191-8 |
0.354 |
|
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