Year |
Citation |
Score |
2020 |
Huang Q, Li M, Lai L, Liu Z. Allostery of multidomain proteins with disordered linkers. Current Opinion in Structural Biology. 62: 175-182. PMID 32151887 DOI: 10.1016/J.Sbi.2020.01.017 |
0.327 |
|
2019 |
Yu M, Chen Y, Wang ZL, Liu Z. Fluctuation correlations as major determinants of structure- and dynamics-driven allosteric effects. Physical Chemistry Chemical Physics : Pccp. PMID 30775734 DOI: 10.1039/C8Cp07859A |
0.311 |
|
2018 |
Xiong J, Gao M, Zhou J, Liu S, Su Z, Liu Z, Huang Y. The influence of intrinsic folding mechanism of an unfolded protein on the coupled folding-binding process during target recognition. Proteins. PMID 30520528 DOI: 10.1002/Prot.25646 |
0.386 |
|
2018 |
Zhang L, Li M, Liu Z. A comprehensive ensemble model for comparing the allosteric effect of ordered and disordered proteins. Plos Computational Biology. 14: e1006393. PMID 30507941 DOI: 10.1371/Journal.Pcbi.1006393 |
0.33 |
|
2018 |
Yu M, Ma X, Cao H, Chong B, Lai L, Liu Z. Singular value decomposition for the correlation of atomic fluctuations with arbitrary angle. Proteins. PMID 30019778 DOI: 10.1002/Prot.25586 |
0.321 |
|
2018 |
Li M, Cao H, Lai L, Liu Z. Disordered linkers in mutli-domain allosteric proteins: entropic effect to favor the open state or enhanced local concentration to favor the closed state? Protein Science : a Publication of the Protein Society. PMID 30019371 DOI: 10.1002/Pro.3475 |
0.345 |
|
2018 |
Wang Z, Liu Z, Huang Z. Angle-adjustable density field formulation for the modeling of crystalline microstructure Physical Review B. 97. DOI: 10.1103/Physrevb.97.180102 |
0.306 |
|
2017 |
Zhang X, Tan D, Li Q, Li M, Gong Z, Tang C, Liu Z, Dong MQ, Lei X, Wang JH. Carboxylate-Selective Chemical Cross-Linkers for Mass Spectrometric Analysis of Protein Structures. Analytical Chemistry. PMID 29251911 DOI: 10.1021/Acs.Analchem.7B03789 |
0.332 |
|
2016 |
Li M, Sun T, Jin F, Yu D, Liu Z. Dimension conversion and scaling of disordered protein chains. Molecular Biosystems. PMID 27440558 DOI: 10.1039/C6Mb00415F |
0.391 |
|
2016 |
Chan HS, Liu Z. Thermodynamics and kinetics of TopoII action: A consensus on T-segment curvature selection? Comment on "Disentangling DNA Molecules" by Alexander Vologodskii. Physics of Life Reviews. PMID 27265508 DOI: 10.1016/J.Plrev.2016.05.016 |
0.559 |
|
2016 |
Cao H, Huang Y, Liu Z. Interplay between binding affinity and kinetics in protein-protein interactions. Proteins. PMID 27018856 DOI: 10.1002/Prot.25041 |
0.392 |
|
2016 |
Yu C, Niu X, Jin F, Liu Z, Jin C, Lai L. Structure-based Inhibitor Design for the Intrinsically Disordered Protein c-Myc. Scientific Reports. 6: 22298. PMID 26931396 DOI: 10.1038/Srep22298 |
0.317 |
|
2015 |
Li M, Liu Z. Dimensions, energetics and denaturant effects of the protein unstructured state. Protein Science : a Publication of the Protein Society. PMID 26683260 DOI: 10.1002/Pro.2865 |
0.413 |
|
2015 |
Liu Z, Chan HS. Consistent rationalization of type-2 topoisomerases' unknotting, decatenating, supercoil-relaxing actions and their scaling relation. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 27: 354103. PMID 26291958 DOI: 10.1088/0953-8984/27/35/354103 |
0.59 |
|
2015 |
Zhang Y, Cao H, Liu Z. Binding cavities and druggability of intrinsically disordered proteins. Protein Science : a Publication of the Protein Society. 24: 688-705. PMID 25611056 DOI: 10.1002/Pro.2641 |
0.372 |
|
2015 |
Huang H, Liu Z, Zhang H, Duan W, Vanderbilt D. Emergence of a Chern-insulating state from a semi-Dirac dispersion Physical Review B - Condensed Matter and Materials Physics. 92. DOI: 10.1103/Physrevb.92.161115 |
0.325 |
|
2015 |
Liu Z, Chan HS. Erratum: Consistent rationalization of type-2 topoisomerases’ unknotting, decatenating, supercoil-relaxing actions and their scaling relation (2015J. Phys.: Condens. Matter27354103) Journal of Physics: Condensed Matter. 27: 459601. DOI: 10.1088/0953-8984/27/45/459601 |
0.539 |
|
2014 |
Liu Z, Huang Y. Advantages of proteins being disordered. Protein Science : a Publication of the Protein Society. 23: 539-50. PMID 24532081 DOI: 10.1002/Pro.2443 |
0.38 |
|
2013 |
Jia C, Wang J, Yao C, Cao Y, Zhong Y, Liu Z, Liu Z, Guo X. Conductance switching and mechanisms in single-molecule junctions. Angewandte Chemie (International Ed. in English). 52: 8666-70. PMID 23818452 DOI: 10.1002/Anie.201304301 |
0.306 |
|
2013 |
Jin F, Liu Z. Inherent relationships among different biophysical prediction methods for intrinsically disordered proteins Biophysical Journal. 104: 488-495. PMID 23442871 DOI: 10.1016/J.Bpj.2012.12.012 |
0.322 |
|
2013 |
Huang Y, Liu Z. Do intrinsically disordered proteins possess high specificity in protein-protein interactions? Chemistry (Weinheim An Der Bergstrasse, Germany). 19: 4462-7. PMID 23436397 DOI: 10.1002/Chem.201203100 |
0.379 |
|
2013 |
Liu Z, Huang Y. Evidences for the unfolding mechanism of three-dimensional domain swapping. Protein Science : a Publication of the Protein Society. 22: 280-6. PMID 23238853 DOI: 10.1002/Pro.2209 |
0.367 |
|
2013 |
Huang H, Duan W, Liu Z. The existence/absence of Dirac cones in graphynes New Journal of Physics. 15: 023004. DOI: 10.1088/1367-2630/15/2/023004 |
0.308 |
|
2012 |
Staneva I, Huang Y, Liu Z, Wallin S. Binding of two intrinsically disordered peptides to a multi-specific protein: a combined Monte Carlo and molecular dynamics study. Plos Computational Biology. 8: e1002682. PMID 23028280 DOI: 10.1371/Journal.Pcbi.1002682 |
0.729 |
|
2012 |
Huang Y, Cao H, Liu Z. Three-dimensional domain swapping in the protein structure space. Proteins. 80: 1610-9. PMID 22411444 DOI: 10.1002/Prot.24055 |
0.324 |
|
2011 |
Huang Y, Liu Z. Anchoring intrinsically disordered proteins to multiple targets: lessons from N-terminus of the p53 protein. International Journal of Molecular Sciences. 12: 1410-30. PMID 21541066 DOI: 10.3390/Ijms12021410 |
0.41 |
|
2011 |
Chan HS, Zhang Z, Wallin S, Liu Z. Cooperativity, local-nonlocal coupling, and nonnative interactions: principles of protein folding from coarse-grained models. Annual Review of Physical Chemistry. 62: 301-26. PMID 21453060 DOI: 10.1146/Annurev-Physchem-032210-103405 |
0.765 |
|
2011 |
Huang Y, Liu Z. Smoothing molecular interactions: the "kinetic buffer" effect of intrinsically disordered proteins. Proteins. 78: 3251-9. PMID 20949632 DOI: 10.1002/Prot.22820 |
0.376 |
|
2010 |
Huang Y, Liu Z. Nonnative interactions in coupled folding and binding processes of intrinsically disordered proteins. Plos One. 5: e15375. PMID 21079758 DOI: 10.1371/Journal.Pone.0015375 |
0.386 |
|
2010 |
Lin J, Wang N, Li Y, Liu Z, Tian S, Zhao L, Zheng Y, Liu S, Li S, Jin C, Xia B. LEC-BiFC: a new method for rapid assay of protein interaction. Biotechnic & Histochemistry : Official Publication of the Biological Stain Commission. 86: 272-9. PMID 20465514 DOI: 10.3109/10520295.2010.483068 |
0.313 |
|
2010 |
Liu Z, Zechiedrich L, Chan HS. Action at hooked or twisted-hooked DNA juxtapositions rationalizes unlinking preference of type-2 topoisomerases. Journal of Molecular Biology. 400: 963-82. PMID 20460130 DOI: 10.1016/J.Jmb.2010.05.007 |
0.603 |
|
2010 |
Liu Z, Zechiedrich L, Chan HS. Local site preference rationalizes disentangling by DNA topoisomerases. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 81: 031902. PMID 20365765 DOI: 10.1103/Physreve.81.031902 |
0.578 |
|
2010 |
Qi Y, Huang Y, Liang H, Liu Z, Lai L. Folding simulations of a de novo designed protein with a betaalphabeta fold. Biophysical Journal. 98: 321-9. PMID 20338854 DOI: 10.1016/J.Bpj.2009.10.018 |
0.381 |
|
2010 |
Ferguson A, Liu Z, Chan HS. Desolvation Barrier Effects Are a Likely Contributor to the Remarkable Diversity in the Folding Rates of Small Proteins [J. Mol. Biol. (2009) 389, 619–636] Journal of Molecular Biology. 401: 153. DOI: 10.1016/J.Jmb.2010.06.020 |
0.593 |
|
2009 |
Huang Y, Liu Z. Kinetic advantage of intrinsically disordered proteins in coupled folding-binding process: a critical assessment of the "fly-casting" mechanism. Journal of Molecular Biology. 393: 1143-59. PMID 19747922 DOI: 10.1016/J.Jmb.2009.09.010 |
0.391 |
|
2009 |
Ferguson A, Liu Z, Chan HS. Desolvation barrier effects are a likely contributor to the remarkable diversity in the folding rates of small proteins. Journal of Molecular Biology. 389: 619-36. PMID 19362564 DOI: 10.1016/J.Jmb.2009.04.011 |
0.659 |
|
2009 |
Liu Z, Deibler RW, Chan HS, Zechiedrich L. The why and how of DNA unlinking. Nucleic Acids Research. 37: 661-71. PMID 19240147 DOI: 10.1093/Nar/Gkp041 |
0.553 |
|
2009 |
Liu Z, Chan HS. Erratum: “Efficient chain moves for Monte Carlo simulations of a wormlike DNA model: Excluded volume, supercoils, site juxtapositions, knots, and comparisons with random-flight and lattice models” [J. Chem. Phys. 128, 145104 (2008)] The Journal of Chemical Physics. 131: 049902. DOI: 10.1063/1.3187933 |
0.59 |
|
2009 |
Ferguson A, Liu Z, Chan HS. Addendum to “Desolvation Barrier Effects Are a Likely Contributor to the Remarkable Diversity in the Folding Rates of Small Proteins” [J. Mol. Biol. 389 (2009) 619–636] Journal of Molecular Biology. 392: 242. DOI: 10.1016/J.Jmb.2009.07.011 |
0.608 |
|
2009 |
Badasyan A, Liu Z, Chan HS. Interplaying roles of native topology and chain length in marginally cooperative and noncooperative folding of small protein fragments International Journal of Quantum Chemistry. 109: 3482-3499. DOI: 10.1002/Qua.22272 |
0.776 |
|
2008 |
Badasyan A, Liu Z, Chan HS. Probing possible downhill folding: native contact topology likely places a significant constraint on the folding cooperativity of proteins with approximately 40 residues. Journal of Molecular Biology. 384: 512-30. PMID 18823994 DOI: 10.1016/J.Jmb.2008.09.023 |
0.78 |
|
2008 |
Liu Z, Chan HS. Efficient chain moves for Monte Carlo simulations of a wormlike DNA model: excluded volume, supercoils, site juxtapositions, knots, and comparisons with random-flight and lattice models. The Journal of Chemical Physics. 128: 145104. PMID 18412482 DOI: 10.1063/1.2899022 |
0.623 |
|
2006 |
Liu Z, Mann JK, Zechiedrich EL, Chan HS. Topological Information Embodied in Local Juxtaposition Geometry Provides a Statistical Mechanical Basis for Unknotting by Type-2 DNA Topoisomerases Journal of Molecular Biology. 361: 268-285. PMID 16842819 DOI: 10.1016/J.Jmb.2006.06.005 |
0.622 |
|
2006 |
Liu Z, Zechiedrich EL, Chan HS. Inferring global topology from local juxtaposition geometry: interlinking polymer rings and ramifications for topoisomerase action. Biophysical Journal. 90: 2344-55. PMID 16537549 DOI: 10.1529/Biophysj.105.076778 |
0.605 |
|
2005 |
Liu Z, Chan HS. Solvation and desolvation effects in protein folding: native flexibility, kinetic cooperativity and enthalpic barriers under isostability conditions. Physical Biology. 2: S75-85. PMID 16280624 DOI: 10.1088/1478-3975/2/4/S01 |
0.65 |
|
2005 |
Liu Z, Chan HS. Desolvation is a likely origin of robust enthalpic barriers to protein folding. Journal of Molecular Biology. 349: 872-89. PMID 15893325 DOI: 10.1016/J.Jmb.2005.03.084 |
0.638 |
|
2005 |
Kaya H, Liu Z, Chan HS. Chevron behavior and isostable enthalpic barriers in protein folding: successes and limitations of simple Gō-like modeling. Biophysical Journal. 89: 520-35. PMID 15863486 DOI: 10.1529/Biophysj.104.057471 |
0.753 |
|
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