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Miguel Carneiro - Publications

Affiliations: 
CIBIO-InBIO 
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48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Aguilar P, Pérez I de Lanuza G, Carneiro M, Andrade P, Pinho C. The role of historical biogeography in shaping colour morph diversity in the common wall lizard. Molecular Ecology. e17338. PMID 38572696 DOI: 10.1111/mec.17338  0.576
2023 Ghosh Roy S, Bakhrat A, Abdu M, Afonso S, Pereira P, Carneiro M, Abdu U. Mutations in SLC45A2 leads to loss of melanin in parrot feathers. G3 (Bethesda, Md.). PMID 37943814 DOI: 10.1093/g3journal/jkad254  0.32
2022 Alonso-Alvarez C, Andrade P, Cantarero A, Morales J, Carneiro M. Relocation to avoid costs: A hypothesis on red carotenoid-based signals based on recent CYP2J19 gene expression data. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2200037. PMID 36209392 DOI: 10.1002/bies.202200037  0.543
2022 Andrade P, Lyra ML, Zina J, Bastos DFO, Brunetti AE, Baêta D, Afonso S, Brunes TO, Taucce PPG, Carneiro M, Haddad CFB, Sequeira F. Draft genome and multi-tissue transcriptome assemblies of the Neotropical leaf-frog Phyllomedusa bahiana. G3 (Bethesda, Md.). PMID 36205610 DOI: 10.1093/g3journal/jkac270  0.486
2022 Toomey MB, Marques CI, Araújo PM, Huang D, Zhong S, Liu Y, Schreiner GD, Myers CA, Pereira P, Afonso S, Andrade P, Gazda MA, Lopes RJ, Viegas I, Koch RE, ... ... Carneiro M, et al. A mechanism for red coloration in vertebrates. Current Biology : Cb. PMID 36049480 DOI: 10.1016/j.cub.2022.08.013  0.543
2022 Sabatino SJ, Pereira P, Carneiro M, Dilytė J, Archer JP, Munoz A, Nonnis-Marzano F, Murias A. The genetics of adaptation in freshwater Eurasian shad (). Ecology and Evolution. 12: e8908. PMID 35646309 DOI: 10.1002/ece3.8908  0.354
2021 Andrade P, Carneiro M. Pterin-based pigmentation in animals. Biology Letters. 17: 20210221. PMID 34403644 DOI: 10.1098/rsbl.2021.0221  0.531
2021 Carneiro M, Vieillard J, Andrade P, Boucher S, Afonso S, Blanco-Aguiar JA, Santos N, Branco J, Esteves PJ, Ferrand N, Kullander K, Andersson L. A loss-of-function mutation in RORB disrupts saltatorial locomotion in rabbits. Plos Genetics. 17: e1009429. PMID 33764968 DOI: 10.1371/journal.pgen.1009429  0.51
2021 Carneiro M, Vieillard J, Andrade P, Boucher S, Afonso S, Blanco-Aguiar JA, Santos N, Branco J, Esteves PJ, Ferrand N, Kullander K, Andersson L. A loss-of-function mutation in RORB disrupts saltatorial locomotion in rabbits. Plos Genetics. 17: e1009429. PMID 33764968 DOI: 10.1371/journal.pgen.1009429  0.51
2021 Andrade P, Gazda MA, Araújo PM, Afonso S, Rasmussen JA, Marques CI, Lopes RJ, Gilbert MTP, Carneiro M. Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates. Plos Genetics. 17: e1009404. PMID 33621224 DOI: 10.1371/journal.pgen.1009404  0.592
2021 Andrade P, Gazda MA, Araújo PM, Afonso S, Rasmussen JA, Marques CI, Lopes RJ, Gilbert MTP, Carneiro M. Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates. Plos Genetics. 17: e1009404. PMID 33621224 DOI: 10.1371/journal.pgen.1009404  0.592
2020 Cantarero A, Andrade P, Carneiro M, Moreno-Borrallo A, Alonso-Alvarez C. Testing the carotenoid-based sexual signalling mechanism by altering gene expression and colour in a bird species. Proceedings. Biological Sciences. 287: 20201067. PMID 33171089 DOI: 10.1098/rspb.2020.1067  0.554
2020 Cantarero A, Andrade P, Carneiro M, Moreno-Borrallo A, Alonso-Alvarez C. Testing the carotenoid-based sexual signalling mechanism by altering gene expression and colour in a bird species. Proceedings. Biological Sciences. 287: 20201067. PMID 33171089 DOI: 10.1098/rspb.2020.1067  0.554
2020 Sato DX, Rafati N, Ring H, Younis S, Feng C, Blanco-Aguiar JA, Rubin CJ, Villafurte R, Hallböök F, Carneiro M, Andersson L. Brain transcriptomics of wild and domestic rabbits suggests that changes in dopamine signalling and ciliary function contributed to evolution of tameness. Genome Biology and Evolution. PMID 32835359 DOI: 10.1093/Gbe/Evaa158  0.366
2020 Gazda MA, Araújo PM, Lopes RJ, Toomey MB, Andrade P, Afonso S, Marques C, Nunes L, Pereira P, Trigo S, Hill GE, Corbo JC, Carneiro M. A genetic mechanism for sexual dichromatism in birds. Science (New York, N.Y.). 368: 1270-1274. PMID 32527835 DOI: 10.1126/Science.Aba0803  0.539
2020 Gazda MA, Araújo PM, Lopes RJ, Toomey MB, Andrade P, Afonso S, Marques C, Nunes L, Pereira P, Trigo S, Hill GE, Corbo JC, Carneiro M. A genetic mechanism for sexual dichromatism in birds. Science (New York, N.Y.). 368: 1270-1274. PMID 32527835 DOI: 10.1126/Science.Aba0803  0.539
2020 Gazda MA, Toomey MB, Araújo PM, Lopes RJ, Afonso S, Myers CA, Serres K, Kiser PD, Hill GE, Corbo JC, Carneiro M. GENETIC BASIS OF DE NOVO APPEARANCE OF CAROTENOID ORNAMENTATION IN BARE-PARTS OF CANARIES. Molecular Biology and Evolution. PMID 31930402 DOI: 10.1093/molbev/msaa006  0.413
2020 Andrade P, Cataldo D, Fontaine R, Rodrigues TM, Queirós J, Neves V, Fonseca A, Carneiro M, Gonçalves D. Selection underlies phenotypic divergence in the insular Azores woodpigeon Zoologica Scripta. 50: 1-15. DOI: 10.1111/zsc.12456  0.5
2019 Letko A, Ammann B, Jagannathan V, Henkel J, Leuthard F, Schelling C, Carneiro M, Drögemüller C, Leeb T. A deletion spanning the promoter and first exon of the hair cycle-specific ASIP transcript isoform in black and tan rabbits. Animal Genetics. 51: 137-140. PMID 31729778 DOI: 10.1111/age.12881  0.314
2019 Koepfli KP, Tamazian G, Wildt D, Dobrynin P, Kim C, Frandsen PB, Godinho R, Yurchenko AA, Komissarov A, Krasheninnikova K, Kliver S, Kolchanova S, Gonçalves M, Carneiro M, Vaz Pinto P, et al. Whole Genome Sequencing and Re-sequencing of the Sable Antelope (): A Resource for Monitoring Diversity in and Populations. G3 (Bethesda, Md.). PMID 31000506 DOI: 10.1534/G3.119.400084  0.322
2019 Andrade P, Pinho C, Pérez I de Lanuza G, Afonso S, Brejcha J, Rubin CJ, Wallerman O, Pereira P, Sabatino SJ, Bellati A, Pellitteri-Rosa D, Bosakova Z, Bunikis I, Carretero MA, Feiner N, ... ... Carneiro M, et al. Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard. Proceedings of the National Academy of Sciences of the United States of America. PMID 30819892 DOI: 10.1073/Pnas.1820320116  0.627
2019 Andrade P, Pinho C, Pérez I de Lanuza G, Afonso S, Brejcha J, Rubin CJ, Wallerman O, Pereira P, Sabatino SJ, Bellati A, Pellitteri-Rosa D, Bosakova Z, Bunikis I, Carretero MA, Feiner N, ... ... Carneiro M, et al. Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard. Proceedings of the National Academy of Sciences of the United States of America. PMID 30819892 DOI: 10.1073/Pnas.1820320116  0.627
2018 Toomey MB, Marques CI, Andrade P, Araújo PM, Sabatino S, Gazda MA, Afonso S, Lopes RJ, Corbo JC, Carneiro M. A non-coding region near controls head colour polymorphism in the Gouldian finch. Proceedings. Biological Sciences. 285. PMID 30282656 DOI: 10.1098/Rspb.2018.1788  0.597
2018 Toomey MB, Marques CI, Andrade P, Araújo PM, Sabatino S, Gazda MA, Afonso S, Lopes RJ, Corbo JC, Carneiro M. A non-coding region near controls head colour polymorphism in the Gouldian finch. Proceedings. Biological Sciences. 285. PMID 30282656 DOI: 10.1098/Rspb.2018.1788  0.597
2018 Gazda MA, Andrade P, Afonso S, Dilyte J, Archer JP, Lopes RJ, Faria R, Carneiro M. Signatures of selection on standing genetic variation underlie athletic and navigational performance in racing pigeons. Molecular Biology and Evolution. PMID 29547891 DOI: 10.1093/molbev/msy030  0.614
2018 Gazda MA, Andrade P, Afonso S, Dilyte J, Archer JP, Lopes RJ, Faria R, Carneiro M. Signatures of selection on standing genetic variation underlie athletic and navigational performance in racing pigeons. Molecular Biology and Evolution. PMID 29547891 DOI: 10.1093/molbev/msy030  0.614
2018 Rafati N, Blanco-Aguiar JA, Rubin CJ, Sayyab S, Sabatino SJ, Afonso S, Feng C, Alves PC, Villafuerte R, Ferrand N, Andersson L, Carneiro M. A genomic map of clinal variation across the European rabbit hybrid zone. Molecular Ecology. PMID 29359877 DOI: 10.1111/Mec.14494  0.386
2018 Makino T, Rubin CJ, Carneiro M, Axelsson E, Andersson L, Webster MT. Elevated proportions of deleterious genetic variation in domestic animals and plants. Genome Biology and Evolution. PMID 29325102 DOI: 10.1093/Gbe/Evy004  0.317
2017 Toomey MB, Lopes RJ, Araújo PM, Johnson JD, Gazda MA, Afonso S, Mota PG, Koch RE, Hill GE, Corbo JC, Carneiro M. High-density lipoprotein receptor SCARB1 is required for carotenoid coloration in birds. Proceedings of the National Academy of Sciences of the United States of America. PMID 28465440 DOI: 10.1073/Pnas.1700751114  0.373
2016 Carneiro M, Hu D, Archer J, Feng C, Afonso S, Chen C, Blanco-Aguilar JA, Garreau H, Boucher S, Ferreira PG, Ferrand N, Rubin CJ, Andersson L. Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus. Genetics. PMID 27986804 DOI: 10.1534/Genetics.116.196667  0.374
2016 Lopes RJ, Johnson JD, Toomey MB, Ferreira MS, Araujo PM, Melo-Ferreira J, Andersson L, Hill GE, Corbo JC, Carneiro M. Genetic Basis for Red Coloration in Birds. Current Biology : Cb. PMID 27212400 DOI: 10.1016/J.Cub.2016.03.076  0.405
2016 Pereira RJ, Barreto FS, Pierce NT, Carneiro M, Burton RS. Transcriptome-Wide Patterns of Divergence During Allopatric Evolution. Molecular Ecology. PMID 26859844 DOI: 10.1111/Mec.13579  0.366
2015 Alves JM, Carneiro M, Afonso S, Lopes S, Garreau H, Boucher S, Allain D, Queney G, Esteves PJ, Bolet G, Ferrand N. Levels and Patterns of Genetic Diversity and Population Structure in Domestic Rabbits. Plos One. 10: e0144687. PMID 26689909 DOI: 10.1371/journal.pone.0144687  0.317
2015 Alves JM, Carneiro M, Afonso S, Lopes S, Garreau H, Boucher S, Allain D, Queney G, Esteves PJ, Bolet G, Ferrand N. Levels and Patterns of Genetic Diversity and Population Structure in Domestic Rabbits. Plos One. 10: e0144687. PMID 26689909 DOI: 10.1371/journal.pone.0144687  0.317
2015 Carneiro M, Piorno V, Rubin CJ, Alves JM, Ferrand N, Alves PC, Andersson L. Candidate genes underlying heritable differences in reproductive seasonality between wild and domestic rabbits. Animal Genetics. PMID 25999142 DOI: 10.1111/Age.12299  0.391
2015 Alves JM, Carneiro M, Afonso S, Lopes S, Garreau H, Boucher S, Allain D, Queney G, Esteves PJ, Bolet G, Ferrand N. Levels and patterns of genetic diversity and population structure in domestic rabbits Plos One. 10. DOI: 10.1371/journal.pone.0144687  0.321
2014 Carneiro M, Rubin CJ, Di Palma F, Albert FW, Alföldi J, Barrio AM, Pielberg G, Rafati N, Sayyab S, Turner-Maier J, Younis S, Afonso S, Aken B, Alves JM, Barrell D, et al. Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication. Science (New York, N.Y.). 345: 1074-9. PMID 25170157 DOI: 10.1126/Science.1253714  0.335
2014 Carneiro M, Albert FW, Afonso S, Pereira RJ, Burbano H, Campos R, Melo-Ferreira J, Blanco-Aguiar JA, Villafuerte R, Nachman MW, Good JM, Ferrand N. The genomic architecture of population divergence between subspecies of the European rabbit. Plos Genetics. 10: e1003519. PMID 25166595 DOI: 10.1371/Journal.Pgen.1003519  0.382
2013 Carneiro M, Baird SJ, Afonso S, Ramirez E, Tarroso P, Teotónio H, Villafuerte R, Nachman MW, Ferrand N. Steep clines within a highly permeable genome across a hybrid zone between two subspecies of the European rabbit. Molecular Ecology. 22: 2511-25. PMID 23530594 DOI: 10.1111/mec.12272  0.311
2013 Sousa VC, Carneiro M, Ferrand N, Hey J. Identifying loci under selection against gene flow in isolation-with-migration models. Genetics. 194: 211-33. PMID 23457232 DOI: 10.1534/genetics.113.149211  0.327
2012 Albert FW, Somel M, Carneiro M, Aximu-Petri A, Halbwax M, Thalmann O, Blanco-Aguiar JA, Plyusnina IZ, Trut L, Villafuerte R, Ferrand N, Kaiser S, Jensen P, Pääbo S. A comparison of brain gene expression levels in domesticated and wild animals. Plos Genetics. 8: e1002962. PMID 23028369 DOI: 10.1371/Journal.Pgen.1002962  0.321
2012 Albert FW, Somel M, Carneiro M, Aximu-Petri A, Halbwax M, Thalmann O, Blanco-Aguiar JA, Plyusnina IZ, Trut L, Villafuerte R, Ferrand N, Kaiser S, Jensen P, Pääbo S. A comparison of brain gene expression levels in domesticated and wild animals. Plos Genetics. 8: e1002962. PMID 23028369 DOI: 10.1371/Journal.Pgen.1002962  0.321
2011 Carneiro M, Afonso S, Geraldes A, Garreau H, Bolet G, Boucher S, Tircazes A, Queney G, Nachman MW, Ferrand N. The genetic structure of domestic rabbits. Molecular Biology and Evolution. 28: 1801-16. PMID 21216839 DOI: 10.1093/Molbev/Msr003  0.379
2011 Carneiro M, Afonso S, Geraldes A, Garreau H, Bolet G, Boucher S, Tircazes A, Queney G, Nachman MW, Ferrand N. The genetic structure of domestic rabbits. Molecular Biology and Evolution. 28: 1801-16. PMID 21216839 DOI: 10.1093/Molbev/Msr003  0.379
2008 Surridge AK, van der Loo W, Abrantes J, Carneiro M, Hewitt GM, Esteves PJ. Diversity and evolutionary history of the MHC DQA gene in leporids. Immunogenetics. 60: 515-25. PMID 18584169 DOI: 10.1007/S00251-008-0309-Z  0.366
2008 Surridge AK, van der Loo W, Abrantes J, Carneiro M, Hewitt GM, Esteves PJ. Diversity and evolutionary history of the MHC DQA gene in leporids. Immunogenetics. 60: 515-25. PMID 18584169 DOI: 10.1007/S00251-008-0309-Z  0.366
2007 Carneiro M, Ferrand N. Extensive intragenic recombination and patterns of linkage disequilibrium at the CSN3 locus in European rabbit. Genetics, Selection, Evolution : Gse. 39: 341-52. PMID 17433245 DOI: 10.1186/1297-9686-39-3-341  0.3
2007 Carneiro M, Ferrand N. Extensive intragenic recombination and patterns of linkage disequilibrium at the CSN3 locus in European rabbit. Genetics, Selection, Evolution : Gse. 39: 341-52. PMID 17433245 DOI: 10.1186/1297-9686-39-3-341  0.3
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