| Year |
Citation |
Score |
| 2023 |
Habtewold T, Wagah M, Tambwe MM, Moore S, Windbichler N, Christophides G, Johnson H, Heaton H, Collins J, Krasheninnikova K, Pelan SE, Pointon DB, Sims Y, Torrance JW, Tracey A, et al. A chromosomal reference genome sequence for the malaria mosquito, , Giles, 1902, Ifakara strain. Wellcome Open Research. 8: 74. PMID 37424773 DOI: 10.12688/wellcomeopenres.18854.1 |
0.428 |
|
| 2023 |
Bista I, Wood JMD, Desvignes T, McCarthy SA, Matschiner M, Ning Z, Tracey A, Torrance J, Sims Y, Chow W, Smith M, Oliver K, Haggerty L, Salzburger W, Postlethwait JH, et al. Genomics of cold adaptations in the Antarctic notothenioid fish radiation. Nature Communications. 14: 3412. PMID 37296119 DOI: 10.1038/s41467-023-38567-6 |
0.39 |
|
| 2023 |
Squires TE, Rödin-Mörch P, Formenti G, Tracey A, Abueg L, Brajuka N, Jarvis E, Halapi EC, Melsted P, Höglund J, Magnússon KP. A Chromosome-Level Genome Assembly for the Rock Ptarmigan (Lagopus muta). G3 (Bethesda, Md.). PMID 37141262 DOI: 10.1093/g3journal/jkad099 |
0.46 |
|
| 2023 |
Gabrielli M, Benazzo A, Biello R, Ancona L, Fuselli S, Iannucci A, Balacco J, Mountcastle J, Tracey A, Ficetola GF, Salvi D, Sollitto M, Fedrigo O, Formenti G, Jarvis ED, et al. A high-quality reference genome for the critically endangered Aeolian wall lizard, Podarcis raffonei. The Journal of Heredity. PMID 36866448 DOI: 10.1093/jhered/esad014 |
0.408 |
|
| 2023 |
Bentley BP, Carrasco-Valenzuela T, Ramos EKS, Pawar H, Souza Arantes L, Alexander A, Banerjee SM, Masterson P, Kuhlwilm M, Pippel M, Mountcastle J, Haase B, Uliano-Silva M, Formenti G, Howe K, ... ... Tracey A, et al. Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America. 120: e2201076120. PMID 36749728 DOI: 10.1073/pnas.2201076120 |
0.391 |
|
| 2022 |
Ayala D, Akone-Ella O, Kengne P, Johnson H, Heaton H, Collins J, Krasheninnikova K, Pelan S, Pointon DL, Sims Y, Torrance J, Tracey A, Uliano-Silva M, von Wyschetzki K, Wood J, et al. The genome sequence of the malaria mosquito, , Giles, 1900. Wellcome Open Research. 7: 287. PMID 36874567 DOI: 10.12688/wellcomeopenres.18445.1 |
0.445 |
|
| 2022 |
Jarvis ED, Formenti G, Rhie A, Guarracino A, Yang C, Wood J, Tracey A, Thibaud-Nissen F, Vollger MR, Porubsky D, Cheng H, Asri M, Logsdon GA, Carnevali P, Chaisson MJP, et al. Semi-automated assembly of high-quality diploid human reference genomes. Nature. PMID 36261518 DOI: 10.1038/s41586-022-05325-5 |
0.421 |
|
| 2022 |
Stevens L, Moya ND, Tanny RE, Gibson SB, Tracey A, Na H, Chitrakar R, Dekker J, Walhout AJM, Baugh LR, Andersen EC. Chromosome-level reference genomes for two strains of Caenorhabditis briggsae: an improved platform for comparative genomics. Genome Biology and Evolution. PMID 35348662 DOI: 10.1093/gbe/evac042 |
0.416 |
|
| 2021 |
Kincaid-Smith J, Tracey A, de Carvalho Augusto R, Bulla I, Holroyd N, Rognon A, Rey O, Chaparro C, Oleaga A, Mas-Coma S, Allienne JF, Grunau C, Berriman M, Boissier J, Toulza E. Morphological and genomic characterisation of the Schistosoma hybrid infecting humans in Europe reveals admixture between Schistosoma haematobium and Schistosoma bovis. Plos Neglected Tropical Diseases. 15: e0010062. PMID 34941866 DOI: 10.1371/journal.pntd.0010062 |
0.626 |
|
| 2021 |
Baptista RP, Li Y, Sateriale A, Brooks KL, Tracey A, Sanders MJ, Ansell BRE, Jex AR, Cooper GW, Smith ED, Xiao R, Dumaine JE, Georgeson P, Pope B, Berriman M, et al. Long-read assembly and comparative evidence-based reanalysis of genome sequences reveals expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions. Genome Research. PMID 34764149 DOI: 10.1101/gr.275325.121 |
0.617 |
|
| 2021 |
Aunin E, Böhme U, Blake D, Dove A, Smith M, Corton C, Oliver K, Betteridge E, Quail MA, McCarthy SA, Wood J, Tracey A, Torrance J, Sims Y, Howe K, et al. The complete genome sequence of (Tyzzer 1929), a common gut parasite of chickens. Wellcome Open Research. 6: 225. PMID 34703904 DOI: 10.12688/wellcomeopenres.17100.1 |
0.625 |
|
| 2021 |
Howe K, Dwinell M, Shimoyama M, Corton C, Betteridge E, Dove A, Quail MA, Smith M, Saba L, Williams RW, Chen H, Kwitek AE, McCarthy SA, Uliano-Silva M, Chow W, ... Tracey A, et al. The genome sequence of the Norway rat, Berkenhout 1769. Wellcome Open Research. 6: 118. PMID 34660910 DOI: 10.12688/wellcomeopenres.16854.1 |
0.415 |
|
| 2021 |
Lo Cascio Sætre C, Eroukhmanoff F, Rönkä K, Kluen E, Thorogood R, Torrance J, Tracey A, Chow W, Pelan S, Howe K, Jakobsen KS, Tørresen OK. A Chromosome-Level Genome Assembly of the Reed Warbler (Acrocephalus scirpaceus). Genome Biology and Evolution. PMID 34499122 DOI: 10.1093/gbe/evab212 |
0.481 |
|
| 2021 |
Berger DJ, Crellen T, Lamberton PHL, Allan F, Tracey A, Noonan JD, Kabatereine NB, Tukahebwa EM, Adriko M, Holroyd N, Webster JP, Berriman M, Cotton JA. Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration. Nature Communications. 12: 4776. PMID 34362894 DOI: 10.1038/s41467-021-24958-0 |
0.62 |
|
| 2021 |
Peart CR, Williams C, Pophaly SD, Neely BA, Gulland FMD, Adams DJ, Ng BL, Cheng W, Goebel ME, Fedrigo O, Haase B, Mountcastle J, Fungtammasan A, Formenti G, Collins J, ... ... Tracey A, et al. Hi-C scaffolded short- and long-read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution. Molecular Ecology Resources. PMID 34097816 DOI: 10.1111/1755-0998.13443 |
0.395 |
|
| 2021 |
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, ... ... Tracey A, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0 |
0.458 |
|
| 2021 |
Formenti G, Rhie A, Balacco J, Haase B, Mountcastle J, Fedrigo O, Brown S, Capodiferro MR, Al-Ajli FO, Ambrosini R, Houde P, Koren S, Oliver K, Smith M, Skelton J, ... ... Tracey A, et al. Complete vertebrate mitogenomes reveal widespread repeats and gene duplications. Genome Biology. 22: 120. PMID 33910595 DOI: 10.1186/s13059-021-02336-9 |
0.303 |
|
| 2021 |
Gonzalez de la Rosa PM, Thomson M, Trivedi U, Tracey A, Tandonnet S, Blaxter M. A telomere-to-telomere assembly of Oscheius tipulae and the evolution of rhabditid nematode chromosomes. G3 (Bethesda, Md.). 11. PMID 33561231 DOI: 10.1093/g3journal/jkaa020 |
0.32 |
|
| 2021 |
Howe K, Chow W, Collins J, Pelan S, Pointon DL, Sims Y, Torrance J, Tracey A, Wood J. Significantly improving the quality of genome assemblies through curation. Gigascience. 10. PMID 33420778 DOI: 10.1093/gigascience/giaa153 |
0.324 |
|
| 2020 |
Diaz Soria CL, Lee J, Chong T, Coghlan A, Tracey A, Young MD, Andrews T, Hall C, Ng BL, Rawlinson K, Doyle SR, Leonard S, Lu Z, Bennett HM, Rinaldi G, et al. Single-cell atlas of the first intra-mammalian developmental stage of the human parasite Schistosoma mansoni. Nature Communications. 11: 6411. PMID 33339816 DOI: 10.1038/s41467-020-20092-5 |
0.513 |
|
| 2020 |
Durrant C, Thiele EA, Holroyd N, Doyle SR, Sallé G, Tracey A, Sankaranarayanan G, Lotkowska ME, Bennett HM, Huckvale T, Abdellah Z, Tchindebet O, Wossen M, Logora MSY, Coulibaly CO, et al. Population genomic evidence that human and animal infections in Africa come from the same populations of Dracunculus medinensis. Plos Neglected Tropical Diseases. 14: e0008623. PMID 33253172 DOI: 10.1371/journal.pntd.0008623 |
0.512 |
|
| 2020 |
Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Quail MA, McCarthy SA, Howe K, Sims Y, Torrance J, ... Tracey A, et al. The genome sequence of the eastern grey squirrel, Gmelin, 1788. Wellcome Open Research. 5: 27. PMID 33215047 DOI: 10.12688/wellcomeopenres.15721.1 |
0.408 |
|
| 2020 |
Doyle SR, Tracey A, Laing R, Holroyd N, Bartley D, Bazant W, Beasley H, Beech R, Britton C, Brooks K, Chaudhry U, Maitland K, Martinelli A, Noonan JD, Paulini M, et al. Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm. Communications Biology. 3: 656. PMID 33168940 DOI: 10.1038/s42003-020-01377-3 |
0.652 |
|
| 2020 |
Olson PD, Tracey A, Baillie A, James K, Doyle SR, Buddenborg SK, Rodgers FH, Holroyd N, Berriman M. Complete representation of a tapeworm genome reveals chromosomes capped by centromeres, necessitating a dual role in segregation and protection. Bmc Biology. 18: 165. PMID 33167983 DOI: 10.1186/s12915-020-00899-w |
0.604 |
|
| 2020 |
Sankaranarayanan G, Coghlan A, Driguez P, Lotkowska ME, Sanders M, Holroyd N, Tracey A, Berriman M, Rinaldi G. Large CRISPR-Cas-induced deletions in the oxamniquine resistance locus of the human parasite . Wellcome Open Research. 5: 178. PMID 32789192 DOI: 10.12688/wellcomeopenres.16031.2 |
0.517 |
|
| 2020 |
Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Dolucan J, Dudchenko O, Omer AD, Weisz D, Lieberman Aiden E, Fedrigo O, ... ... Tracey A, et al. The genome sequence of the Eurasian red squirrel, Linnaeus 1758. Wellcome Open Research. 5: 18. PMID 32587897 DOI: 10.12688/wellcomeopenres.15679.1 |
0.41 |
|
| 2020 |
Tracey A, Foster JM, Paulini M, Grote A, Mattick J, Tsai YC, Chung M, Cotton JA, Clark TA, Geber A, Holroyd N, Korlach J, Libro S, Lustigman S, Michalski ML, et al. Nearly Complete Genome Sequence of Brugia malayi Strain FR3. Microbiology Resource Announcements. 9. PMID 32527783 DOI: 10.1128/MRA.00154-20 |
0.583 |
|
| 2020 |
Foster JM, Grote A, Mattick J, Tracey A, Tsai YC, Chung M, Cotton JA, Clark TA, Geber A, Holroyd N, Korlach J, Li Y, Libro S, Lustigman S, Michalski ML, et al. Sex chromosome evolution in parasitic nematodes of humans. Nature Communications. 11: 1964. PMID 32327641 DOI: 10.1038/S41467-020-15654-6 |
0.562 |
|
| 2020 |
Mead D, Hailer F, Chadwick E, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan JD, Dudchenko O, Omer A, Weisz D, Lieberman Aiden E, McCarthy S, ... ... Tracey A, et al. The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758. Wellcome Open Research. 5: 33. PMID 32258427 DOI: 10.12688/wellcomeopenres.15722.1 |
0.41 |
|
| 2019 |
Doyle SR, Illingworth CJR, Laing R, Bartley DJ, Redman E, Martinelli A, Holroyd N, Morrison AA, Rezansoff A, Tracey A, Devaney E, Berriman M, Sargison N, Cotton JA, Gilleard JS. Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus. Bmc Genomics. 20: 218. PMID 30876405 DOI: 10.1186/S12864-019-5592-6 |
0.556 |
|
| 2019 |
Salter SJ, Scott P, Page AJ, Tracey A, de Goffau MC, Cormie C, Ochoa-Montaño B, Ling CL, Tangmanakit J, Turner P, Parkhill J. 'Candidatus Ornithobacterium hominis': insights gained from draft genomes obtained from nasopharyngeal swabs. Microbial Genomics. PMID 30720420 DOI: 10.1099/mgen.0.000247 |
0.437 |
|
| 2019 |
Ittiprasert W, Mann VH, Karinshak SE, Coghlan A, Rinaldi G, Sankaranarayanan G, Chaidee A, Tanno T, KumKhaek C, Prangtaworn P, Mentink-Kane MM, Cochran CJ, Driguez P, Holroyd N, Tracey A, et al. Programmed genome editing of the omega-1 ribonuclease of the blood fluke, . Elife. 8. PMID 30644357 DOI: 10.7554/Elife.41337 |
0.549 |
|
| 2018 |
Kanzaki N, Tsai IJ, Tanaka R, Hunt VL, Liu D, Tsuyama K, Maeda Y, Namai S, Kumagai R, Tracey A, Holroyd N, Doyle SR, Woodruff GC, Murase K, Kitazume H, et al. Biology and genome of a newly discovered sibling species of Caenorhabditis elegans. Nature Communications. 9: 3216. PMID 30097582 DOI: 10.1038/S41467-018-05712-5 |
0.553 |
|
| 2018 |
Sallé G, Laing R, Cotton JA, Maitland K, Martinelli A, Holroyd N, Tracey A, Berriman M, Smith WD, Newlands GFJ, Hanks E, Devaney E, Britton C. Transcriptomic profiling of nematode parasites surviving vaccine exposure. International Journal For Parasitology. PMID 29534987 DOI: 10.1016/J.Ijpara.2018.01.004 |
0.464 |
|
| 2017 |
Doyle SR, Laing R, Bartley DJ, Britton C, Chaudhry U, Gilleard JS, Holroyd N, Mable BK, Maitland K, Morrison AA, Tait A, Tracey A, Berriman M, Devaney E, Cotton JA, et al. A genome resequencing-based genetic map reveals the recombination landscape of an outbred parasitic nematode in the presence of polyploidy and polyandry. Genome Biology and Evolution. PMID 29267942 DOI: 10.1093/Gbe/Evx269 |
0.593 |
|
| 2016 |
Cotton JA, Bennuru S, Grote A, Harsha B, Tracey A, Beech R, Doyle SR, Dunn M, Hotopp JC, Holroyd N, Kikuchi T, Lambert O, Mhashilkar A, Mutowo P, Nursimulu N, et al. The genome of Onchocerca volvulus, agent of river blindness. Nature Microbiology. 2: 16216. PMID 27869790 DOI: 10.1038/Nmicrobiol.2016.216 |
0.553 |
|
| 2016 |
Hunt VL, Tsai IJ, Coghlan A, Reid AJ, Holroyd N, Foth BJ, Tracey A, Cotton JA, Stanley EJ, Beasley H, Bennett HM, Brooks K, Harsha B, Kajitani R, Kulkarni A, et al. The genomic basis of parasitism in the Strongyloides clade of nematodes. Nature Genetics. PMID 26829753 DOI: 10.1038/Ng.3495 |
0.585 |
|
| 2014 |
Foth BJ, Tsai IJ, Reid AJ, Bancroft AJ, Nichol S, Tracey A, Holroyd N, Cotton JA, Stanley EJ, Zarowiecki M, Liu JZ, Huckvale T, Cooper PJ, Grencis RK, Berriman M. Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction. Nature Genetics. 46: 693-700. PMID 24929830 DOI: 10.1038/Ng.3010 |
0.612 |
|
| 2014 |
Jackson AP, Otto TD, Darby A, Ramaprasad A, Xia D, Echaide IE, Farber M, Gahlot S, Gamble J, Gupta D, Gupta Y, Jackson L, Malandrin L, Malas TB, Moussa E, ... ... Tracey A, et al. The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host-parasite interaction. Nucleic Acids Research. 42: 7113-31. PMID 24799432 DOI: 10.1093/Nar/Gku322 |
0.582 |
|
| 2013 |
Howe K, Clark MD, Torroja CF, Torrance J, Berthelot C, Muffato M, Collins JE, Humphray S, McLaren K, Matthews L, McLaren S, Sealy I, Caccamo M, Churcher C, Scott C, ... ... Tracey A, et al. The zebrafish reference genome sequence and its relationship to the human genome. Nature. 496: 498-503. PMID 23594743 DOI: 10.1038/Nature12111 |
0.459 |
|
| 2013 |
Tsai IJ, Zarowiecki M, Holroyd N, Garciarrubio A, Sanchez-Flores A, Brooks KL, Tracey A, Bobes RJ, Fragoso G, Sciutto E, Aslett M, Beasley H, Bennett HM, Cai J, Camicia F, et al. The genomes of four tapeworm species reveal adaptations to parasitism. Nature. 496: 57-63. PMID 23485966 DOI: 10.1038/Nature12031 |
0.634 |
|
| 2009 |
Méndez-Lago M, Wild J, Whitehead SL, Tracey A, de Pablos B, Rogers J, Szybalski W, Villasante A. Novel sequencing strategy for repetitive DNA in a Drosophila BAC clone reveals that the centromeric region of the Y chromosome evolved from a telomere. Nucleic Acids Research. 37: 2264-73. PMID 19237394 DOI: 10.1093/Nar/Gkp085 |
0.337 |
|
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