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Casey E. Romanoski, Ph.D. - Publications

Affiliations: 
2010 University of California, Los Angeles, Los Angeles, CA 
Area:
Genetics, Bioinformatics Biology
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36/54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Adelus ML, Ding J, Tran BT, Conklin AC, Golebiewski AK, Stolze LK, Whalen MB, Cusanovich DA, Romanoski CE. Single-cell 'omic profiles of human aortic endothelial cells in vitro and human atherosclerotic lesions ex vivo reveal heterogeneity of endothelial subtype and response to activating perturbations. Elife. 12. PMID 38578680 DOI: 10.7554/eLife.91729  0.308
2023 Fowler JWM, Boutagy NE, Zhang R, Horikami D, Whalen MB, Romanoski CE, Sessa WC. SREBP2 regulates the endothelial response to cytokines via direct transcriptional activation of KLF6. Journal of Lipid Research. 100411. PMID 37437844 DOI: 10.1016/j.jlr.2023.100411  0.316
2023 Afshar Y, Ma F, Quach A, Jeong A, Sunshine HL, Freitas V, Jami-Alahmadi Y, Helaers R, Li X, Pellegrini M, Wohlschlegel JA, Romanoski CE, Vikkula M, Iruela-Arispe ML. Transcriptional drifts associated with environmental changes in endothelial cells. Elife. 12. PMID 36971339 DOI: 10.7554/eLife.81370  0.36
2022 Civelek M, Fogelman AM, Hedrick CC, Lusis AJ, Romanoski CE, Witztum JL. In memoriam: Judith A. Berliner, Ph.D. Journal of Lipid Research. 63: 100180. PMID 35298953 DOI: 10.1016/j.jlr.2022.100180  0.508
2022 Toropainen A, Stolze LK, Örd T, Whalen MB, Torrell PM, Link VM, Kaikkonen MU, Romanoski CE. Functional noncoding SNPs in human endothelial cells fine-map vascular trait associations. Genome Research. 32: 409-424. PMID 35193936 DOI: 10.1101/gr.276064.121  0.341
2021 Chella Krishnan K, Vergnes L, Acín-Pérez R, Stiles L, Shum M, Ma L, Mouisel E, Pan C, Moore TM, Péterfy M, Romanoski CE, Reue K, Björkegren JLM, Laakso M, Liesa M, et al. Sex-specific genetic regulation of adipose mitochondria and metabolic syndrome by Ndufv2. Nature Metabolism. PMID 34697471 DOI: 10.1038/s42255-021-00481-w  0.386
2021 Örd T, Õunap K, Stolze L, Aherrahrou R, Nurminen V, Selvarajan I, Toropainen A, Lönnberg T, Aavik E, Yla-Herttuala S, Civelek M, Romanoski CE, Kaikkonen MU. Single-Cell Epigenomics and Functional Fine-Mapping of Atherosclerosis GWAS Loci. Circulation Research. PMID 34024118 DOI: 10.1161/CIRCRESAHA.121.318971  0.384
2021 Selvarajan I, Toropainen A, Garske KM, López Rodríguez M, Ko A, Miao Z, Kaminska D, Õunap K, Örd T, Ravindran A, Liu OH, Moreau PR, Jawahar Deen A, Männistö V, Pan C, ... ... Romanoski CE, et al. Integrative analysis of liver-specific non-coding regulatory SNPs associated with the risk of coronary artery disease. American Journal of Human Genetics. PMID 33626337 DOI: 10.1016/j.ajhg.2021.02.006  0.485
2021 Hartiala JA, Han Y, Jia Q, Hilser JR, Huang P, Gukasyan J, Schwartzman WS, Cai Z, Biswas S, Trégouët DA, Smith NL, Seldin M, ... ... Romanoski CE, et al. Genome-wide analysis identifies novel susceptibility loci for myocardial infarction. European Heart Journal. PMID 33532862 DOI: 10.1093/eurheartj/ehaa1040  0.39
2020 Stolze LK, Conklin AC, Whalen MB, López Rodríguez M, Õunap K, Selvarajan I, Toropainen A, Örd T, Li J, Eshghi A, Solomon AE, Fang Y, Kaikkonen MU, Romanoski CE. Systems Genetics in Human Endothelial Cells Identifies Non-coding Variants Modifying Enhancers, Expression, and Complex Disease Traits. American Journal of Human Genetics. PMID 32442411 DOI: 10.1016/J.Ajhg.2020.04.008  0.473
2020 Sajti E, Link VM, Ouyang Z, Spann NJ, Westin E, Romanoski CE, Fonseca GJ, Prince LS, Glass CK. Transcriptomic and epigenetic mechanisms underlying myeloid diversity in the lung. Nature Immunology. PMID 31959980 DOI: 10.1038/S41590-019-0582-Z  0.322
2018 Allan CM, Heizer PJ, Tu Y, Sandoval NP, Jung RS, Morales JE, Sajti E, Troutman TD, Saunders TL, Cusanovich DA, Beigneux AP, Romanoski CE, Fong LG, Young SG. An upstream enhancer regulates expression in a tissue-specific manner. Journal of Lipid Research. PMID 30598475 DOI: 10.1194/Jlr.M091322  0.338
2018 Krause MD, Huang RT, Wu D, Shentu TP, Harrison DL, Whalen MB, Stolze LK, Di Rienzo A, Moskowitz IP, Civelek M, Romanoski CE, Fang Y. Genetic variant at coronary artery disease and ischemic stroke locus 1p32.2 regulates endothelial responses to hemodynamics. Proceedings of the National Academy of Sciences of the United States of America. PMID 30429326 DOI: 10.1073/Pnas.1810568115  0.431
2018 Hitzel J, Lee E, Zhang Y, Bibli SI, Li X, Zukunft S, Pflüger B, Hu J, Schürmann C, Vasconez AE, Oo JA, Kratzer A, Kumar S, Rezende F, Josipovic I, ... ... Romanoski CE, et al. Oxidized phospholipids regulate amino acid metabolism through MTHFD2 to facilitate nucleotide release in endothelial cells. Nature Communications. 9: 2292. PMID 29895827 DOI: 10.1038/S41467-018-04602-0  0.516
2018 Link VM, Romanoski CE, Metzler D, Glass CK. MMARGE: Motif Mutation Analysis for Regulatory Genomic Elements. Nucleic Acids Research. PMID 29893919 DOI: 10.1093/Nar/Gky491  0.412
2018 Link VM, Duttke SH, Chun HB, Holtman IR, Westin E, Hoeksema MA, Abe Y, Skola D, Romanoski CE, Tao J, Fonseca GJ, Troutman TD, Spann NJ, Strid T, Sakai M, et al. Analysis of Genetically Diverse Macrophages Reveals Local and Domain-wide Mechanisms that Control Transcription Factor Binding and Function. Cell. PMID 29779944 DOI: 10.1016/J.Cell.2018.04.018  0.404
2018 Fang Y, Krause M, Civelek M, Romanoski C. Abstract 217: Coronary Artery Disease Locus 1p32.2 Harbors a Flow-Sensitive Endothelial Enhancer that Regulates PLPP3 Arteriosclerosis, Thrombosis, and Vascular Biology. 38. DOI: 10.1161/Atvb.38.Suppl_1.217  0.35
2017 Hogan NT, Whalen MB, Stolze LK, Hadeli NK, Lam MT, Springstead JR, Glass CK, Romanoski CE. Transcriptional networks specifying homeostatic and inflammatory programs of gene expression in human aortic endothelial cells. Elife. 6. PMID 28585919 DOI: 10.7554/Elife.22536  0.465
2017 Hogan NT, Whalen MB, Stolze LK, Hadeli NK, Lam MT, Springstead JR, Glass CK, Romanoski CE. Author response: Transcriptional networks specifying homeostatic and inflammatory programs of gene expression in human aortic endothelial cells Elife. DOI: 10.7554/Elife.22536.042  0.408
2016 Thomas GD, Hanna RN, Vasudevan NT, Hamers AA, Romanoski CE, McArdle S, Ross KD, Blatchley A, Yoakum D, Hamilton BA, Mikulski Z, Jain MK, Glass CK, Hedrick CC. Deleting an Nr4a1 Super-Enhancer Subdomain Ablates Ly6C(low) Monocytes while Preserving Macrophage Gene Function. Immunity. PMID 27814941 DOI: 10.1016/J.Immuni.2016.10.011  0.6
2015 Romanoski CE, Link VM, Heinz S, Glass CK. Exploiting genomics and natural genetic variation to decode macrophage enhancers. Trends in Immunology. 36: 507-18. PMID 26298065 DOI: 10.1016/J.It.2015.07.006  0.413
2015 de Aguiar Vallim TQ, Tarling EJ, Ahn H, Hagey LR, Romanoski CE, Lee RG, Graham MJ, Motohashi H, Yamamoto M, Edwards PA. MAFG is a transcriptional repressor of bile acid synthesis and metabolism. Cell Metabolism. 21: 298-310. PMID 25651182 DOI: 10.1016/J.Cmet.2015.01.007  0.309
2015 Heinz S, Romanoski CE, Benner C, Glass CK. The selection and function of cell type-specific enhancers. Nature Reviews. Molecular Cell Biology. 16: 144-54. PMID 25650801 DOI: 10.1038/Nrm3949  0.43
2014 Gosselin D, Link VM, Romanoski CE, Fonseca GJ, Eichenfield DZ, Spann NJ, Stender JD, Chun HB, Garner H, Geissmann F, Glass CK. Environment drives selection and function of enhancers controlling tissue-specific macrophage identities. Cell. 159: 1327-40. PMID 25480297 DOI: 10.1016/J.Cell.2014.11.023  0.374
2014 Kaikkonen MU, Niskanen H, Romanoski CE, Kansanen E, Kivelä AM, Laitalainen J, Heinz S, Benner C, Glass CK, Ylä-Herttuala S. Control of VEGF-A transcriptional programs by pausing and genomic compartmentalization. Nucleic Acids Research. 42: 12570-84. PMID 25352550 DOI: 10.1093/Nar/Gku1036  0.44
2013 Maubaret CG, Salpea KD, Romanoski CE, Folkersen L, Cooper JA, Stephanou C, Li KW, Palmen J, Hamsten A, Neil A, Stephens JW, Lusis AJ, Eriksson P, Talmud PJ, Humphries SE, et al. Association of TERC and OBFC1 haplotypes with mean leukocyte telomere length and risk for coronary heart disease. Plos One. 8: e83122. PMID 24349443 DOI: 10.1371/Journal.Pone.0083122  0.436
2013 Shibata N, Carlin AF, Spann NJ, Saijo K, Morello CS, McDonald JG, Romanoski CE, Maurya MR, Kaikkonen MU, Lam MT, Crotti A, Reichart D, Fox JN, Quehenberger O, Raetz CR, et al. 25-Hydroxycholesterol activates the integrated stress response to reprogram transcription and translation in macrophages. The Journal of Biological Chemistry. 288: 35812-23. PMID 24189069 DOI: 10.1074/Jbc.M113.519637  0.337
2013 Heinz S, Romanoski CE, Benner C, Allison KA, Kaikkonen MU, Orozco LD, Glass CK. Effect of natural genetic variation on enhancer selection and function. Nature. 503: 487-92. PMID 24121437 DOI: 10.1038/Nature12615  0.639
2013 Kaikkonen MU, Spann NJ, Heinz S, Romanoski CE, Allison KA, Stender JD, Chun HB, Tough DF, Prinjha RK, Benner C, Glass CK. Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription. Molecular Cell. 51: 310-25. PMID 23932714 DOI: 10.1016/J.Molcel.2013.07.010  0.362
2013 Erbilgin A, Civelek M, Romanoski CE, Pan C, Hagopian R, Berliner JA, Lusis AJ. Identification of CAD candidate genes in GWAS loci and their expression in vascular cells. Journal of Lipid Research. 54: 1894-905. PMID 23667179 DOI: 10.1194/Jlr.M037085  0.671
2012 Lee S, Birukov KG, Romanoski CE, Springstead JR, Lusis AJ, Berliner JA. Role of phospholipid oxidation products in atherosclerosis. Circulation Research. 111: 778-99. PMID 22935534 DOI: 10.1161/Circresaha.111.256859  0.542
2012 Lee S, Springstead JR, Parks BW, Romanoski CE, Palvolgyi R, Ho T, Nguyen P, Lusis AJ, Berliner JA. Metalloproteinase processing of HBEGF is a proximal event in the response of human aortic endothelial cells to oxidized phospholipids. Arteriosclerosis, Thrombosis, and Vascular Biology. 32: 1246-54. PMID 22402363 DOI: 10.1161/Atvbaha.111.241257  0.493
2011 Kim JB, Xia YR, Romanoski CE, Lee S, Meng Y, Shi YS, Bourquard N, Gong KW, Port Z, Grijalva V, Reddy ST, Berliner JA, Lusis AJ, Shih DM. Paraoxonase-2 modulates stress response of endothelial cells to oxidized phospholipids and a bacterial quorum-sensing molecule. Arteriosclerosis, Thrombosis, and Vascular Biology. 31: 2624-33. PMID 21836061 DOI: 10.1161/Atvbaha.111.232827  0.485
2011 Romanoski CE, Che N, Yin F, Mai N, Pouldar D, Civelek M, Pan C, Lee S, Vakili L, Yang WP, Kayne P, Mungrue IN, Araujo JA, Berliner JA, Lusis AJ. Network for activation of human endothelial cells by oxidized phospholipids: a critical role of heme oxygenase 1. Circulation Research. 109: e27-41. PMID 21737788 DOI: 10.1161/Circresaha.111.241869  0.653
2010 Romanoski CE, Lee S, Kim MJ, Ingram-Drake L, Plaisier CL, Yordanova R, Tilford C, Guan B, He A, Gargalovic PS, Kirchgessner TG, Berliner JA, Lusis AJ. Systems genetics analysis of gene-by-environment interactions in human cells. American Journal of Human Genetics. 86: 399-410. PMID 20170901 DOI: 10.1016/J.Ajhg.2010.02.002  0.542
2007 Bennett BJ, Romanoski CE, Lusis AJ. Network-centered view of coronary artery disease. Expert Review of Cardiovascular Therapy. 5: 1095-103. PMID 18035925 DOI: 10.1586/14779072.5.6.1095  0.444
Low-probability matches (unlikely to be authored by this person)
2008 Park MS, Romanoski CE, Pryor BM. A re-examination of the phylogenetic relationship between the causal agents of carrot black rot, Alternaria radicina and A. carotiincultae. Mycologia. 100: 511-27. PMID 18751557 DOI: 10.3852/07-186R1  0.292
2024 Selvarajan I, Kiema M, Huang RT, Li J, Zhu J, Pölönen P, Örd T, Õunap K, Godiwala M, Golebiewski AK, Ravindran A, Mäklin K, Toropainen A, Stolze LK, Arce M, ... ... Romanoski CE, et al. Coronary Artery Disease Risk Variant Dampens the Expression of CALCRL by Reducing HSF Binding to Shear Stress Responsive Enhancer in Endothelial Cells In Vitro. Arteriosclerosis, Thrombosis, and Vascular Biology. PMID 38602103 DOI: 10.1161/ATVBAHA.123.318964  0.286
2023 Adelus ML, Ding J, Tran BT, Conklin AC, Golebiewski AK, Stolze LK, Whalen MB, Cusanovich DA, Romanoski CE. Multiomics of human aortic endothelial cells reveals cell subtypes with heterogeneous responses to canonical endothelial-to-mesenchymal perturbations. Biorxiv : the Preprint Server For Biology. PMID 37066416 DOI: 10.1101/2023.04.03.535495  0.272
2023 Boutagy NE, Fowler JW, Grabinska KA, Cardone R, Sun Q, Vazquez KR, Whalen MB, Zhu X, Chakraborty R, Martin KA, Simons M, Romanoski CE, Kibbey RG, Sessa WC. TNFα increases the degradation of pyruvate dehydrogenase kinase 4 by the Lon protease to support proinflammatory genes. Proceedings of the National Academy of Sciences of the United States of America. 120: e2218150120. PMID 37695914 DOI: 10.1073/pnas.2218150120  0.271
2020 Chang EH, Willis AL, Romanoski CE, Cusanovich DA, Pouladi N, Li J, Lussier YA, Martinez FD. RV Infections in Asthmatics Increase ACE2 Expression and Cytokine Pathways Implicated in COVID-19. American Journal of Respiratory and Critical Care Medicine. PMID 32649217 DOI: 10.1164/Rccm.202004-1343Le  0.271
2024 Li J, Zhu J, Gray O, Sobreira DR, Wu D, Huang RT, Miao B, Sakabe NJ, Krause MD, Kaikkonen MU, Romanoski CE, Nobrega MA, Fang Y. Mechanosensitive super-enhancers regulate genes linked to atherosclerosis in endothelial cells. The Journal of Cell Biology. 223. PMID 38231044 DOI: 10.1083/jcb.202211125  0.264
2023 Shin J, Hong J, Edwards-Glenn J, Krukovets I, Tkachenko S, Adelus ML, Romanoski CE, Rajagopalan S, Podrez E, Byzova TV, Stenina-Adongravi O, Cherepanova OA. Unraveling the Role of Sex in Endothelial Cell Dysfunction: Evidence From Lineage Tracing Mice and Cultured Cells. Arteriosclerosis, Thrombosis, and Vascular Biology. PMID 38031841 DOI: 10.1161/ATVBAHA.123.319833  0.261
2015 Schwarz F, Pearce OM, Wang X, Samraj AN, Läubli H, Garcia JO, Lin H, Fu X, Garcia-Bingman A, Secrest P, Romanoski CE, Heyser C, Glass CK, Hazen SL, Varki N, et al. Author response: Siglec receptors impact mammalian lifespan by modulating oxidative stress Elife. DOI: 10.7554/Elife.06184.026  0.26
2015 Schwarz F, Pearce OM, Wang X, Samraj AN, Läubli H, Garcia JO, Lin H, Fu X, Garcia-Bingman A, Secrest P, Romanoski CE, Heyser C, Glass CK, Hazen SL, Varki N, et al. Siglec receptors impact mammalian lifespan by modulating oxidative stress. Elife. 4. PMID 25846707 DOI: 10.7554/Elife.06184  0.251
2015 Romanoski CE, Glass CK, Stunnenberg HG, Wilson L, Almouzni G. Epigenomics: Roadmap for regulation. Nature. 518: 314-6. PMID 25693562 DOI: 10.1038/518314A  0.23
2022 Shen Z, Li RZ, Prohaska TA, Hoeksema MA, Spann NJ, Tao J, Fonseca GJ, Le T, Stolze LK, Sakai M, Romanoski CE, Glass CK. Systematic analysis of naturally occurring insertions and deletions that alter transcription factor spacing identifies tolerant and sensitive transcription factor pairs. Elife. 11. PMID 35049498 DOI: 10.7554/eLife.70878  0.221
2020 Romanoski CE, Qi X, Sangam S, Vanderpool RR, Stearman RS, Conklin A, Gonzalez-Garay M, Rischard F, Ayon RJ, Wang J, Simonson T, Babicheva A, Shi Y, Tang H, Makino A, et al. Transcriptomic profiles in pulmonary arterial hypertension associate with disease severity and identify novel candidate genes. Pulmonary Circulation. 10: 2045894020968531. PMID 33343881 DOI: 10.1177/2045894020968531  0.198
2021 Conklin AC, Nishi H, Schlamp F, Örd T, Õunap K, Kaikkonen MU, Fisher EA, Romanoski CE. Meta-Analysis of Smooth Muscle Lineage Transcriptomes in Atherosclerosis and Their Relationships to In Vitro Models. Immunometabolism. 3. PMID 34178388 DOI: 10.20900/immunometab20210022  0.17
2021 Kariotis S, Jammeh E, Swietlik EM, Pickworth JA, Rhodes CJ, Otero P, Wharton J, Iremonger J, Dunning MJ, Pandya D, Mascarenhas TS, Errington N, Thompson AAR, Romanoski CE, Rischard F, et al. Biological heterogeneity in idiopathic pulmonary arterial hypertension identified through unsupervised transcriptomic profiling of whole blood. Nature Communications. 12: 7104. PMID 34876579 DOI: 10.1038/s41467-021-27326-0  0.169
2021 Watson AW, Grant AD, Parker SS, Hill S, Whalen MB, Chakrabarti J, Harman MW, Roman MR, Forte BL, Gowan CC, Castro-Portuguez R, Stolze LK, Franck C, Cusanovich DA, Zavros Y, ... ... Romanoski CE, et al. Breast tumor stiffness instructs bone metastasis via maintenance of mechanical conditioning. Cell Reports. 35: 109293. PMID 34192535 DOI: 10.1016/j.celrep.2021.109293  0.154
2020 Johnson MD, Younis US, Menghani SV, Addison KJ, Whalen M, Pilon AL, Cress AE, Polverino F, Romanoski C, Kraft M, Martinez FD, Guerra S, Ledford JG. CC16 Binding to α4β1 Integrin (VLA-4) Protects Against Infection. American Journal of Respiratory and Critical Care Medicine. PMID 33326355 DOI: 10.1164/rccm.202006-2576OC  0.147
2022 Kariotis S, Jammeh E, Swietlik EM, Pickworth JA, Rhodes CJ, Otero P, Wharton J, Iremonger J, Dunning MJ, Pandya D, Mascarenhas TS, Errington N, Thompson AAR, Romanoski CE, Rischard F, et al. Author Correction: Biological heterogeneity in idiopathic pulmonary arterial hypertension identified through unsupervised transcriptomic profiling of whole blood. Nature Communications. 13: 7276. PMID 36433938 DOI: 10.1038/s41467-022-33381-y  0.107
2020 Merritt EF, Johnson HJ, Wong ZS, Buntzman AS, Conklin AC, Cabral CM, Romanoski CE, Boyle JP, Koshy AA. Transcriptional Profiling Suggests T Cells Cluster around Neurons Injected with Toxoplasma gondii Proteins. Msphere. 5. PMID 32878927 DOI: 10.1128/mSphere.00538-20  0.104
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