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Taichi E Takasuka, Ph.D - Publications

Affiliations: 
2014- Hokkaido University, Sapporo-shi, Hokkaidō, Japan 
Website:
http://lab.agr.hokudai.ac.jp/takasuka/index_en.html
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Kato H, Takahashi Y, Suzuki H, Ohashi K, Kawashima R, Nakamura K, Sakai K, Hori C, Takasuka TE, Kato M, Shimizu M. Identification and characterization of methoxy- and dimethoxyhydroquinone 1,2-dioxygenase from . Applied and Environmental Microbiology. e0175323. PMID 38259078 DOI: 10.1128/aem.01753-23  0.351
2023 Takasuka T, Kim H, Deng K, Bianchetti CM, Yamashita K, Beebe ET, Bergeman LF, Vander Meulen KA, Deutsch S, Ralph J, Adams PD, Northen TR, Fox BG. Quantitative analysis of The High Yield Hydrolysis of Kelp by Laminarinase and Alginate Lyase. Chembiochem : a European Journal of Chemical Biology. e202300357. PMID 37402642 DOI: 10.1002/cbic.202300357  0.625
2023 Matsumoto R, Mehjabin JJ, Noguchi H, Miyamoto T, Takasuka TE, Hori C. Genomic and Secretomic Analyses of the Newly Isolated Fungus SS3 Identified CAZymes Potentially Related to a Serious Pathogenesis of Hardwood Trees. Applied and Environmental Microbiology. e0027223. PMID 37098943 DOI: 10.1128/aem.00272-23  0.301
2023 Kumar V, Fox BG, Takasuka TE. Consolidated bioprocessing of plant biomass to polyhydroxyalkanoate by co-culture of Streptomyces sp. SirexAA-E and Priestia megaterium. Bioresource Technology. 376: 128934. PMID 36940873 DOI: 10.1016/j.biortech.2023.128934  0.476
2022 Koper K, Hataya S, Hall AG, Takasuka TE, Maeda HA. Biochemical characterization of plant aromatic aminotransferases. Methods in Enzymology. 680: 35-83. PMID 36710018 DOI: 10.1016/bs.mie.2022.07.034  0.342
2021 Ohashi K, Hataya S, Nakata A, Matsumoto K, Kato N, Sato W, Carlos-Shanley C, Beebe ET, Currie CR, Fox BG, Takasuka TE. Mannose and mannobiose specific responses of insect associated cellulolytic . Applied and Environmental Microbiology. PMID 33990299 DOI: 10.1128/AEM.02719-20  0.56
2020 Glasgow EM, Kemna EI, Bingman CA, Ing N, Deng K, Bianchetti CM, Takasuka TE, Northen TR, Fox BG. A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis. The Journal of Biological Chemistry. 295: 17752-17769. PMID 33454012 DOI: 10.1074/jbc.RA120.015328  0.782
2020 Glasgow EM, Kemna EI, Bingman CA, Ing NL, Deng K, Bianchetti CM, Takasuka TE, Northen TR, Fox BG. A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis. The Journal of Biological Chemistry. PMID 33067356 DOI: 10.1074/jbc.RA120.015328  0.782
2020 Hori C, Song R, Matsumoto K, Matsumoto R, Minkoff BB, Oita S, Hara H, Takasuka TE. Proteomic characterization of lignocellulolytic enzymes secreted by the insect-associated fungus, oita, isolated from the forest in northern Japan. Applied and Environmental Microbiology. PMID 32060026 DOI: 10.1128/Aem.02350-19  0.458
2019 Watanabe T, Kojima H, Umezawa K, Hori C, Takasuka TE, Kato Y, Fukui M. Genomes of Neutrophilic Sulfur-Oxidizing Chemolithoautotrophs Representing 9 Proteobacterial Species From 8 Genera. Frontiers in Microbiology. 10: 316. PMID 30858836 DOI: 10.3389/Fmicb.2019.00316  0.328
2019 Glasgow EM, Vander Meulen KA, Takasuka TE, Bianchetti CM, Bergeman LF, Deutsch S, Fox BG. Extent and Origins of Functional Diversity in a Subfamily of Glycoside Hydrolases. Journal of Molecular Biology. PMID 30685401 DOI: 10.1016/J.Jmb.2019.01.024  0.77
2017 Cheng N, Koda K, Tamai Y, Yamamoto Y, Takasuka TE, Uraki Y. Optimization of simultaneous saccharification and fermentation conditions with amphipathic lignin derivatives for concentrated bioethanol production. Bioresource Technology. 232: 126-132. PMID 28214699 DOI: 10.1016/J.Biortech.2017.02.018  0.312
2016 Book AJ, Lewin GR, McDonald BR, Takasuka TE, Wendt-Pienkowski E, Doering DT, Suh S, Raffa KF, Fox BG, Currie CR. Evolution of High Cellulolytic Activity in Symbiotic Streptomyces through Selection of Expanded Gene Content and Coordinated Gene Expression. Plos Biology. 14: e1002475. PMID 27276034 DOI: 10.1371/Journal.Pbio.1002475  0.61
2015 Walker JA, Takasuka TE, Deng K, Bianchetti CM, Udell HS, Prom BM, Kim H, Adams PD, Northen TR, Fox BG. Multifunctional cellulase catalysis targeted by fusion to different carbohydrate-binding modules. Biotechnology For Biofuels. 8: 220. PMID 26697109 DOI: 10.1186/S13068-015-0402-0  0.675
2015 Deng K, Takasuka TE, Bianchetti CM, Bergeman LF, Adams PD, Northen TR, Fox BG. Use of Nanostructure-Initiator Mass Spectrometry to Deduce Selectivity of Reaction in Glycoside Hydrolases. Frontiers in Bioengineering and Biotechnology. 3: 165. PMID 26579511 DOI: 10.3389/Fbioe.2015.00165  0.655
2015 Deng K, Guenther JM, Gao J, Bowen BP, Tran H, Reyes-Ortiz V, Cheng X, Sathitsuksanoh N, Heins R, Takasuka TE, Bergeman LF, Geertz-Hansen H, Deutsch S, Loqué D, Sale KL, et al. Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS. Frontiers in Bioengineering and Biotechnology. 3: 153. PMID 26528471 DOI: 10.3389/Fbioe.2015.00153  0.673
2015 Bianchetti CM, Takasuka TE, Deutsch S, Udell HS, Yik EJ, Bergeman LF, Fox BG. Active site and laminarin binding in glycoside hydrolase family 55. The Journal of Biological Chemistry. 290: 11819-32. PMID 25752603 DOI: 10.1074/Jbc.M114.623579  0.704
2015 Walker JA, Takasuka TE, Deng K, Bianchetti CM, Udell H, Prom BM, Kim H, Northern TR, Fox BG. Substrate Binding Effects of Carbohydrate Binding Modules on the Catalytic Activity of a Multifunctional Cellulase Biophysical Journal. 108: 225a. DOI: 10.1016/J.Bpj.2014.11.1244  0.642
2014 Book AJ, Yennamalli RM, Takasuka TE, Currie CR, Phillips GN, Fox BG. Evolution of substrate specificity in bacterial AA10 lytic polysaccharide monooxygenases. Biotechnology For Biofuels. 7: 109. PMID 25161697 DOI: 10.1186/1754-6834-7-109  0.665
2014 Book AJ, Lewin GR, McDonald BR, Takasuka TE, Doering DT, Adams AS, Blodgett JA, Clardy J, Raffa KF, Fox BG, Currie CR. Cellulolytic Streptomyces strains associated with herbivorous insects share a phylogenetically linked capacity to degrade lignocellulose. Applied and Environmental Microbiology. 80: 4692-701. PMID 24837391 DOI: 10.1128/Aem.01133-14  0.632
2014 Deng K, Takasuka TE, Heins R, Cheng X, Bergeman LF, Shi J, Aschenbrener R, Deutsch S, Singh S, Sale KL, Simmons BA, Adams PD, Singh AK, Fox BG, Northen TR. Rapid kinetic characterization of glycosyl hydrolases based on oxime derivatization and nanostructure-initiator mass spectrometry (NIMS). Acs Chemical Biology. 9: 1470-9. PMID 24819174 DOI: 10.1021/Cb5000289  0.674
2014 Takasuka TE, Acheson JF, Bianchetti CM, Prom BM, Bergeman LF, Book AJ, Currie CR, Fox BG. Biochemical properties and atomic resolution structure of a proteolytically processed β-mannanase from cellulolytic Streptomyces sp. SirexAA-E Plos One. 9. PMID 24710170 DOI: 10.1371/Journal.Pone.0094166  0.774
2014 Takasuka TE, Walker JA, Bergeman LF, Vander Meulen KA, Makino S, Elsen NL, Fox BG. Cell-free translation of biofuel enzymes. Methods in Molecular Biology (Clifton, N.J.). 1118: 71-95. PMID 24395410 DOI: 10.1007/978-1-62703-782-2_5  0.795
2014 Takasuka TE, Bianchetti CM, Tobimatsu Y, Bergeman LF, Ralph J, Fox BG. Structure-guided analysis of catalytic specificity of the abundantly secreted chitosanase SACTE_5457 from Streptomyces sp. SirexAA-E Proteins: Structure, Function and Bioinformatics. 82: 1245-1257. PMID 24338856 DOI: 10.1002/Prot.24491  0.641
2014 Takasuka TE, Hsieh YJ, Stein A. Miniaturized sequencing gel system for quick analysis of DNA by hydroxyl radical cleavage. Applied Biochemistry and Biotechnology. 172: 1-8. PMID 24043455 DOI: 10.1007/S12010-013-0512-8  0.509
2013 Bianchetti CM, Harmann CH, Takasuka TE, Hura GL, Dyer K, Fox BG. Fusion of dioxygenase and lignin-binding domains in a novel secreted enzyme from cellulolytic Streptomyces sp. SirexAA-E. The Journal of Biological Chemistry. 288: 18574-87. PMID 23653358 DOI: 10.1074/Jbc.M113.475848  0.66
2013 Chandrasekaran A, Deng K, Koh CY, Takasuka T, Bergeman LF, Fox BG, Adams PD, Singh AK. A universal flow cytometry assay for screening carbohydrate-active enzymes using glycan microspheres Chemical Communications. 49: 5441-5443. PMID 23536035 DOI: 10.1039/C3Cc39155H  0.608
2013 Takasuka TE, Book AJ, Lewin GR, Currie CR, Fox BG. Aerobic deconstruction of cellulosic biomass by an insect-associated Streptomyces. Scientific Reports. 3: 1030. PMID 23301151 DOI: 10.1038/Srep01030  0.678
2011 Riederer A, Takasuka TE, Makino S, Stevenson DM, Bukhman YV, Elsen NL, Fox BG. Global gene expression patterns in Clostridium thermocellum as determined by microarray analysis of chemostat cultures on cellulose or cellobiose. Applied and Environmental Microbiology. 77: 1243-53. PMID 21169455 DOI: 10.1128/Aem.02008-10  0.734
2010 Takasuka TE, Stein A. Direct measurements of the nucleosome-forming preferences of periodic DNA motifs challenge established models. Nucleic Acids Research. 38: 5672-80. PMID 20460457 DOI: 10.1093/Nar/Gkq279  0.49
2010 Stein A, Takasuka TE, Collings CK. Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences? Nucleic Acids Research. 38: 709-19. PMID 19934265 DOI: 10.1093/Nar/Gkp1043  0.506
2008 Takasuka TE, Cioffi A, Stein A. Sequence information encoded in DNA that may influence long-range chromatin structure correlates with human chromosome functions. Plos One. 3: e2643. PMID 18612465 DOI: 10.1371/Journal.Pone.0002643  0.651
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