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Ioannis Androulakis - Publications

Affiliations: 
1993 Chemical Engineering Purdue University, West Lafayette, IN, United States 
 1993-1996 Chemical Engineering Princeton University, Princeton, NJ 
 1997- Chemical Engineering, Biomedical Engineering Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Website:
http://www.ipandro.com/
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51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Rao R, Yang Q, Orman MA, Berthiaume F, Ierapetritou MG, Androulakis IP. Burn trauma disrupts circadian rhythms in rat liver. International Journal of Burns and Trauma. 6: 12-25. PMID 27335693  0.78
2015 Rao R, Orman MA, Berthiaume F, Androulakis IP. Dynamics of hepatic gene expression and serum cytokine profiles in single and double-hit burn and sepsis animal models. Data in Brief. 3: 229-33. PMID 26217749 DOI: 10.1016/J.Dib.2015.02.018  0.736
2014 Nguyen TT, Mattick JS, Yang Q, Orman MA, Ierapetritou MG, Berthiaume F, Androulakis IP. Bioinformatics analysis of transcriptional regulation of circadian genes in rat liver. Bmc Bioinformatics. 15: 83. PMID 24666587 DOI: 10.1186/1471-2105-15-83  0.764
2014 Zhang S, Broadbelt LJ, Androulakis IP, Ierapetritou MG. Reactive flow simulation based on the integration of automated mechanism generation and on-the-fly reduction Energy and Fuels. 28: 4801-4811. DOI: 10.1021/Ef5010539  0.455
2013 Mattick JS, Kamisoglu K, Ierapetritou MG, Androulakis IP, Berthiaume F. Branched-chain amino acid supplementation: impact on signaling and relevance to critical illness. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 5: 449-60. PMID 23554299 DOI: 10.1002/Wsbm.1219  0.692
2013 Orman MA, Ierapetritou MG, Androulakis IP, Berthiaume F. Effect of fasting on the metabolic response of liver to experimental burn injury. Plos One. 8: e54825. PMID 23393558 DOI: 10.1371/Journal.Pone.0054825  0.778
2013 Mattick JS, Yang Q, Orman MA, Ierapetritou MG, Berthiaume F, Gale SC, Androulakis IP. Impact of burn priming on immune and metabolic functions of whole Liver in a rat cecal ligation and puncture model. International Journal of Burns and Trauma. 3: 55-65. PMID 23386986  0.79
2013 Euling SY, White LD, Kim AS, Sen B, Wilson VS, Keshava C, Keshava N, Hester S, Ovacik MA, Ierapetritou MG, Androulakis IP, Gaido KW. Use of genomic data in risk assessment case study: II. Evaluation of the dibutyl phthalate toxicogenomic data set. Toxicology and Applied Pharmacology. 271: 349-62. PMID 21745491 DOI: 10.1016/j.taap.2011.06.014  0.492
2013 Ovacik MA, Sen B, Euling SY, Gaido KW, Ierapetritou MG, Androulakis IP. Pathway modeling of microarray data: a case study of pathway activity changes in the testis following in utero exposure to dibutyl phthalate (DBP). Toxicology and Applied Pharmacology. 271: 386-94. PMID 20850466 DOI: 10.1016/J.Taap.2010.09.008  0.507
2013 Zhang S, Androulakis IP, Ierapetritou MG. A hybrid kinetic mechanism reduction scheme based on the on-the-fly reduction and quasi-steady-state approximation Chemical Engineering Science. 93: 150-162. DOI: 10.1016/J.Ces.2013.01.066  0.487
2012 Orman MA, Mattick J, Androulakis IP, Berthiaume F, Ierapetritou MG. Stoichiometry based steady-state hepatic flux analysis: computational and experimental aspects. Metabolites. 2: 268-91. PMID 24957379 DOI: 10.3390/Metabo2010268  0.783
2012 Mattick JS, Yang Q, Orman MA, Ierapetritou MG, Berthiaume F, Androulakis IP. Long-term gene expression profile dynamics following cecal ligation and puncture in the rat. The Journal of Surgical Research. 178: 431-42. PMID 22572618 DOI: 10.1016/J.Jss.2012.03.052  0.762
2012 Orman MA, Ierapetritou MG, Berthiaume F, Androulakis IP. Long-term dynamic profiling of inflammatory mediators in double-hit burn and sepsis animal models. Cytokine. 58: 307-15. PMID 22402033 DOI: 10.1016/J.Cyto.2012.01.017  0.764
2012 Yang Q, Mattick JS, Orman MA, Nguyen TT, Ierapetritou MG, Berthiaume F, Androulakis IP. Dynamics of hepatic gene expression profile in a rat cecal ligation and puncture model. The Journal of Surgical Research. 176: 583-600. PMID 22381171 DOI: 10.1016/J.Jss.2011.11.1031  0.779
2012 Yang Q, Orman MA, Berthiaume F, Ierapetritou MG, Androulakis IP. Dynamics of short-term gene expression profiling in liver following thermal injury. The Journal of Surgical Research. 176: 549-58. PMID 22099593 DOI: 10.1016/J.Jss.2011.09.052  0.785
2012 Orman MA, Androulakis IP, Berthiaume F, Ierapetritou MG. Metabolic network analysis of perfused livers under fed and fasted states: incorporating thermodynamic and futile-cycle-associated regulatory constraints. Journal of Theoretical Biology. 293: 101-10. PMID 22037644 DOI: 10.1016/J.Jtbi.2011.10.019  0.785
2012 Zhang S, Broadbelt LJ, Androulakis IP, Ierapetritou MG. Comparison of biodiesel performance based on HCCI engine simulation using detailed mechanism with on-the-fly reduction Energy and Fuels. 26: 976-983. DOI: 10.1021/Ef2019512  0.445
2011 Orman MA, Berthiaume F, Androulakis IP, Ierapetritou MG. Advanced stoichiometric analysis of metabolic networks of mammalian systems. Critical Reviews in Biomedical Engineering. 39: 511-34. PMID 22196224 DOI: 10.1615/Critrevbiomedeng.V39.I6.30  0.759
2011 Orman MA, Ierapetritou MG, Berthiaume F, Androulakis IP. The dynamics of the early inflammatory response in double-hit burn and sepsis animal models. Cytokine. 56: 494-502. PMID 21824784 DOI: 10.1016/J.Cyto.2011.07.001  0.747
2011 Orman MA, Ierapetritou MG, Androulakis IP, Berthiaume F. Metabolic response of perfused livers to various oxygenation conditions. Biotechnology and Bioengineering. 108: 2947-57. PMID 21755498 DOI: 10.1002/Bit.23261  0.76
2011 Orman MA, Nguyen TT, Ierapetritou MG, Berthiaume F, Androulakis IP. Comparison of the cytokine and chemokine dynamics of the early inflammatory response in models of burn injury and infection. Cytokine. 55: 362-71. PMID 21652218 DOI: 10.1016/J.Cyto.2011.05.010  0.768
2011 Orman MA, Berthiaume F, Androulakis IP, Ierapetritou MG. Pathway analysis of liver metabolism under stressed condition. Journal of Theoretical Biology. 272: 131-40. PMID 21163266 DOI: 10.1016/J.Jtbi.2010.11.042  0.778
2011 Foteinou PT, Calvano SE, Lowry SF, Androulakis IP. A physiological model for autonomic heart rate regulation in human endotoxemia. Shock (Augusta, Ga.). 35: 229-39. PMID 21063241 DOI: 10.1016/J.Jcrc.2010.12.022  0.351
2011 Yang Q, Berthiaume F, Androulakis IP. A quantitative model of thermal injury-induced acute inflammation. Mathematical Biosciences. 229: 135-48. PMID 20708022 DOI: 10.1016/j.mbs.2010.08.003  0.612
2011 He K, Androulakis IP, Ierapetritou MG. Numerical Investigation of Homogeneous Charge Compression Ignition (HCCI) Combustion with Detailed Chemical Kinetics Using On-the-Fly Reduction Energy & Fuels. 25: 3369-3376. DOI: 10.1021/Ef200290Z  0.465
2011 Saharidis GK, Androulakis IP, Ierapetritou MG. Model building using bi-level optimization Journal of Global Optimization. 49: 49-67. DOI: 10.1007/S10898-010-9533-9  0.461
2011 He K, Ierapetritou MG, Androulakis IP. Exploring flux representations of complex kinetics networks Aiche Journal. 58: 553-567. DOI: 10.1002/Aic.12608  0.483
2011 Georgopoulos PG, Isukapalli S, Androulakis IP, Ierapetritou MG, Welsh WJ. Multiscale Integration of Toxicokinetic and Toxicodynamic Processes: From Cell and Tissue to Organ and “Whole Body” Models General, Applied and Systems Toxicology. DOI: 10.1002/9780470744307.Gat237  0.484
2010 Orman MA, Arai K, Yarmush ML, Androulakis IP, Berthiaume F, Ierapetritou MG. Metabolic flux determination in perfused livers by mass balance analysis: effect of fasting. Biotechnology and Bioengineering. 107: 825-35. PMID 20661905 DOI: 10.1002/Bit.22878  0.781
2010 Iyer VV, Ovacik MA, Androulakis IP, Roth CM, Ierapetritou MG. Transcriptional and metabolic flux profiling of triadimefon effects on cultured hepatocytes. Toxicology and Applied Pharmacology. 248: 165-77. PMID 20659493 DOI: 10.1016/J.Taap.2010.07.015  0.54
2010 He K, Androulakis IP, Ierapetritou MG. Incorporation of Detailed Chemical Mechanisms in Reactive Flow Simulations Using Element-Flux Analysis Industrial & Engineering Chemistry Research. 49: 10471-10478. DOI: 10.1021/Ie100490W  0.472
2010 He K, Androulakis IP, Ierapetritou MG. Multi-element Flux Analysis for the Incorporation of Detailed Kinetic Mechanisms in Reactive Simulations Energy & Fuels. 24: 309-317. DOI: 10.1021/Ef900803Q  0.475
2010 He K, Androulakis IP, Ierapetritou MG. On-the-fly reduction of kinetic mechanisms using element flux analysis Chemical Engineering Science. 65: 1173-1184. DOI: 10.1016/J.Ces.2009.09.073  0.481
2009 Foteinou PT, Calvano SE, Lowry SF, Androulakis I. Translational potential of systems-based models of inflammation. Clinical and Translational Science. 2: 85-89. PMID 20443873 DOI: 10.1111/J.1752-8062.2008.00051.X  0.314
2009 Foteinou PT, Yang E, Saharidis GK, Ierapetritou MG, Androulakis IP. A mixed-integer optimization framework for the synthesis and analysis of regulatory networks Journal of Global Optimization. 43: 263-276. DOI: 10.1007/S10898-007-9266-6  0.515
2009 He K, Ierapetritou MG, Androulakis IP. Integration of on‐the‐fly kinetic reduction with multidimensional CFD Aiche Journal. 56: 1305-1314. DOI: 10.1002/Aic.12072  0.463
2008 Ovacik M, Androulakis I. On the Potential for Integrating Gene Expression and Metabolic Flux Data Current Bioinformatics. 3: 142-148. DOI: 10.2174/157489308785909223  0.385
2008 He K, Ierapetritou MG, Androulakis IP. A graph-based approach to developing adaptive representations of complex reaction mechanisms Combustion and Flame. 155: 585-604. DOI: 10.1016/J.Combustflame.2008.05.004  0.45
2007 Yang E, Maguire T, Yarmush ML, Berthiaume F, Androulakis IP. Bioinformatics analysis of the early inflammatory response in a rat thermal injury model Bmc Bioinformatics. 8. PMID 17214898 DOI: 10.1186/1471-2105-8-10  0.624
2001 Sirdeshpande AR, Ierapetritou MG, Androulakis IP. Design of flexible reduced kinetic mechanisms Aiche Journal. 47: 2461-2473. DOI: 10.1002/Aic.690471110  0.467
2000 Adjiman CS, Androulakis IP, Floudas CA. Global optimization of mixed-integer nonlinear problems Aiche Journal. 46: 1769-1797. DOI: 10.1002/Aic.690460908  0.625
1999 Androulakis I, Reklaitis G. Approaches to asynchronous decentralized decision making Computers & Chemical Engineering. 23: 341-355. DOI: 10.1016/S0098-1354(98)00278-6  0.463
1998 Adjiman C, Androulakis I, Floudas C. A global optimization method, αBB, for general twice-differentiable constrained NLPs—II. Implementation and computational results Computers & Chemical Engineering. 22: 1159-1179. DOI: 10.1016/S0098-1354(98)00218-X  0.611
1998 Klepeis J, Androulakis I, Ierapetritou M, Floudas C. Predicting solvated peptide conformations via global minimization of energetic atom-to-atom interactions Computers & Chemical Engineering. 22: 765-788. DOI: 10.1016/S0098-1354(97)00258-5  0.725
1997 Androulakis IP, Nayak NN, Ierapetritou MG, Monos DS, Floudas CA. A predictive method for the evaluation of peptide binding in pocket 1 of HLA-DRB1 via global minimization of energy interactions. Proteins. 29: 87-102. PMID 9294869 DOI: 10.1002/(Sici)1097-0134(199709)29:1<87::Aid-Prot7>3.0.Co;2-C  0.566
1997 Androulakis I, Maranas C, Floudas C. Journal of Global Optimization. 11: 1-34. DOI: 10.1023/A:1008224308626  0.582
1997 Maranas C, Androulakis I, Floudas C, Berger A, Mulvey J. Solving long-term financial planning problems via global optimization Journal of Economic Dynamics and Control. 21: 1405-1425. DOI: 10.1016/S0165-1889(97)00032-8  0.581
1997 Adjiman C, Androulakis I, Floudas C. Global optimization of MINLP problems in process synthesis and design Computers & Chemical Engineering. 21: S445-S450. DOI: 10.1016/S0098-1354(97)87542-4  0.617
1996 Adjiman C, Androulakis I, Maranas C, Floudas C. A global optimization method, αBB, for process design Computers & Chemical Engineering. 20: S419-S424. DOI: 10.1016/0098-1354(96)00080-4  0.684
1995 Androulakis I, Reklaitis G. Asynchronous relaxation algorithms Computers & Chemical Engineering. 19: 827-845. DOI: 10.1016/0098-1354(94)00083-2  0.457
1995 Androulakis IP, Maranas CD, Floudas CA. ?BB: A global optimization method for general constrained nonconvex problems Journal of Global Optimization. 7: 337-363. DOI: 10.1007/Bf01099647  0.586
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