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David J. Witherspoon, Ph.D. - Publications

Affiliations: 
2000 University of Utah, Salt Lake City, UT 
Area:
Genetics
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Feusier J, Watkins WS, Thomas J, Farrell A, Witherspoon DJ, Baird L, Ha H, Xing J, Jorde LB. Pedigree-based estimation of human mobile element retrotransposition rates. Genome Research. 29: 1567-1577. PMID 31575651 DOI: 10.1101/Gr.247965.118  0.358
2017 Feusier J, Witherspoon DJ, Scott Watkins W, Goubert C, Sasani TA, Jorde LB. Discovery of rare, diagnostic AluYb8/9 elements in diverse human populations. Mobile Dna. 8: 9. PMID 28770012 DOI: 10.1186/S13100-017-0093-0  0.436
2015 Simonson TS, Huff CD, Witherspoon DJ, Prchal JT, Jorde LB. Adaptive genetic changes related to haemoglobin concentration in native high-altitude Tibetans. Experimental Physiology. 100: 1263-8. PMID 26454145 DOI: 10.1113/Ep085035  0.422
2015 Platt RN, Zhang Y, Witherspoon DJ, Xing J, Suh A, Keith MS, Jorde LB, Stevens RD, Ray DA. Targeted Capture of Phylogenetically Informative Ves SINE Insertions in Genus Myotis. Genome Biology and Evolution. 7: 1664-75. PMID 26014613 DOI: 10.1093/Gbe/Evv099  0.45
2014 Wuren T, Simonson TS, Qin G, Xing J, Huff CD, Witherspoon DJ, Jorde LB, Ge RL. Shared and unique signals of high-altitude adaptation in geographically distinct Tibetan populations. Plos One. 9: e88252. PMID 24642866 DOI: 10.1371/Journal.Pone.0088252  0.427
2014 Li H, Glusman G, Hu H, Shankaracharya, Caballero J, Hubley R, Witherspoon D, Guthery SL, Mauldin DE, Jorde LB, Hood L, Roach JC, Huff CD. Relationship estimation from whole-genome sequence data. Plos Genetics. 10: e1004144. PMID 24497848 DOI: 10.1371/Journal.Pgen.1004144  0.388
2013 Xing J, Wuren T, Simonson TS, Watkins WS, Witherspoon DJ, Wu W, Qin G, Huff CD, Jorde LB, Ge RL. Genomic analysis of natural selection and phenotypic variation in high-altitude mongolians. Plos Genetics. 9: e1003634. PMID 23874230 DOI: 10.1371/Journal.Pgen.1003634  0.456
2013 Witherspoon DJ, Zhang Y, Xing J, Watkins WS, Ha H, Batzer MA, Jorde LB. Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations. Genome Research. 23: 1170-81. PMID 23599355 DOI: 10.1101/Gr.148973.112  0.484
2013 Xing J, Witherspoon DJ, Jorde LB. Mobile element biology: new possibilities with high-throughput sequencing. Trends in Genetics : Tig. 29: 280-9. PMID 23312846 DOI: 10.1016/J.Tig.2012.12.002  0.4
2012 Watkins WS, Xing J, Huff C, Witherspoon DJ, Zhang Y, Perego UA, Woodward SR, Jorde LB. Genetic analysis of ancestry, admixture and selection in Bolivian and Totonac populations of the New World. Bmc Genetics. 13: 39. PMID 22606979 DOI: 10.1186/1471-2156-13-39  0.323
2012 Ge RL, Simonson TS, Cooksey RC, Tanna U, Qin G, Huff CD, Witherspoon DJ, Xing J, Zhengzhong B, Prchal JT, Jorde LB, McClain DA. Metabolic insight into mechanisms of high-altitude adaptation in Tibetans. Molecular Genetics and Metabolism. 106: 244-7. PMID 22503288 DOI: 10.1016/J.Ymgme.2012.03.003  0.325
2012 Huff CD, Witherspoon DJ, Zhang Y, Gatenbee C, Denson LA, Kugathasan S, Hakonarson H, Whiting A, Davis CT, Wu W, Xing J, Watkins WS, Bamshad MJ, Bradfield JP, Bulayeva K, et al. Crohn's disease and genetic hitchhiking at IBD5. Molecular Biology and Evolution. 29: 101-11. PMID 21816865 DOI: 10.1093/Molbev/Msr151  0.303
2011 Huff CD, Witherspoon DJ, Simonson TS, Xing J, Watkins WS, Zhang Y, Tuohy TM, Neklason DW, Burt RW, Guthery SL, Woodward SR, Jorde LB. Maximum-likelihood estimation of recent shared ancestry (ERSA). Genome Research. 21: 768-74. PMID 21324875 DOI: 10.1101/Gr.115972.110  0.354
2011 Simonson TS, Xing J, Barrett R, Jerah E, Loa P, Zhang Y, Watkins WS, Witherspoon DJ, Huff CD, Woodward S, Mowry B, Jorde LB. Ancestry of the Iban is predominantly Southeast Asian: genetic evidence from autosomal, mitochondrial, and Y chromosomes. Plos One. 6: e16338. PMID 21305013 DOI: 10.1371/Journal.Pone.0016338  0.389
2010 Xing J, Watkins WS, Shlien A, Walker E, Huff CD, Witherspoon DJ, Zhang Y, Simonson TS, Weiss RB, Schiffman JD, Malkin D, Woodward SR, Jorde LB. Toward a more uniform sampling of human genetic diversity: a survey of worldwide populations by high-density genotyping. Genomics. 96: 199-210. PMID 20643205 DOI: 10.1016/J.Ygeno.2010.07.004  0.339
2010 Witherspoon DJ, Xing J, Zhang Y, Watkins WS, Batzer MA, Jorde LB. Mobile element scanning (ME-Scan) by targeted high-throughput sequencing. Bmc Genomics. 11: 410. PMID 20591181 DOI: 10.1186/1471-2164-11-410  0.527
2010 Simonson TS, Yang Y, Huff CD, Yun H, Qin G, Witherspoon DJ, Bai Z, Lorenzo FR, Xing J, Jorde LB, Prchal JT, Ge R. Genetic evidence for high-altitude adaptation in Tibet. Science (New York, N.Y.). 329: 72-5. PMID 20466884 DOI: 10.1126/Science.1189406  0.416
2010 Simonson TS, Zhang Y, Huff CD, Xing J, Watkins WS, Witherspoon DJ, Woodward SR, Jorde LB. Limited distribution of a cardiomyopathy-associated variant in India. Annals of Human Genetics. 74: 184-8. PMID 20201939 DOI: 10.1111/J.1469-1809.2010.00561.X  0.348
2010 Huff CD, Xing J, Rogers AR, Witherspoon D, Jorde LB. Mobile elements reveal small population size in the ancient ancestors of Homo sapiens. Proceedings of the National Academy of Sciences of the United States of America. 107: 2147-52. PMID 20133859 DOI: 10.1073/Pnas.0909000107  0.46
2009 Witherspoon DJ, Watkins WS, Zhang Y, Xing J, Tolpinrud WL, Hedges DJ, Batzer MA, Jorde LB. Alu repeats increase local recombination rates. Bmc Genomics. 10: 530. PMID 19917129 DOI: 10.1186/1471-2164-10-530  0.458
2009 Xing J, Watkins WS, Witherspoon DJ, Zhang Y, Guthery SL, Thara R, Mowry BJ, Bulayeva K, Weiss RB, Jorde LB. Fine-scaled human genetic structure revealed by SNP microarrays. Genome Research. 19: 815-25. PMID 19411602 DOI: 10.1101/Gr.085589.108  0.347
2008 Watkins WS, Thara R, Mowry BJ, Zhang Y, Witherspoon DJ, Tolpinrud W, Bamshad MJ, Tirupati S, Padmavati R, Smith H, Nancarrow D, Filippich C, Jorde LB. Genetic variation in South Indian castes: evidence from Y-chromosome, mitochondrial, and autosomal polymorphisms. Bmc Genetics. 9: 86. PMID 19077280 DOI: 10.1186/1471-2156-9-86  0.333
2008 Xing J, Watkins WS, Zhang Y, Witherspoon DJ, Jorde LB. High fidelity of whole-genome amplified DNA on high-density single nucleotide polymorphism arrays. Genomics. 92: 452-6. PMID 18786630 DOI: 10.1016/J.Ygeno.2008.08.007  0.336
2008 Xing J, Witherspoon DJ, Watkins WS, Zhang Y, Tolpinrud W, Jorde LB. HapMap tagSNP transferability in multiple populations: general guidelines. Genomics. 92: 41-51. PMID 18482828 DOI: 10.1016/J.Ygeno.2008.03.011  0.399
2007 Xing J, Witherspoon DJ, Ray DA, Batzer MA, Jorde LB. Mobile DNA elements in primate and human evolution. American Journal of Physical Anthropology. 2-19. PMID 18046749 DOI: 10.1002/Ajpa.20722  0.443
2007 Witherspoon DJ, Wooding S, Rogers AR, Marchani EE, Watkins WS, Batzer MA, Jorde LB. Genetic similarities within and between human populations. Genetics. 176: 351-9. PMID 17339205 DOI: 10.1534/Genetics.106.067355  0.344
2006 Witherspoon DJ, Marchani EE, Watkins WS, Ostler CT, Wooding SP, Anders BA, Fowlkes JD, Boissinot S, Furano AV, Ray DA, Rogers AR, Batzer MA, Jorde LB. Human population genetic structure and diversity inferred from polymorphic L1(LINE-1) and Alu insertions. Human Heredity. 62: 30-46. PMID 17003565 DOI: 10.1159/000095851  0.386
2005 Hedges DJ, Cordaux R, Xing J, Witherspoon DJ, Rogers AR, Jorde LB, Batzer MA. Modeling the amplification dynamics of human Alu retrotransposons. Plos Computational Biology. 1: e44. PMID 16201008 DOI: 10.1371/Journal.Pcbi.0010044  0.456
2004 Sakagami T, Witherspoon DJ, Nakajima T, Jinnai N, Wooding S, Jorde LB, Hasegawa T, Suzuki E, Gejyo F, Inoue I. Local adaptation and population differentiation at the interleukin 13 and interleukin 4 loci Genes and Immunity. 5: 389-397. PMID 15215888 DOI: 10.1038/Sj.Gene.6364109  0.306
2004 Barry EG, Witherspoon DJ, Lampe DJ. A bacterial genetic screen identifies functional coding sequences of the insect mariner transposable element Famar1 amplified from the genome of the earwig, Forficula auricularia. Genetics. 166: 823-33. PMID 15020471 DOI: 10.1534/Genetics.166.2.823  0.514
2003 Salem AH, Ray DA, Xing J, Callinan PA, Myers JS, Hedges DJ, Garber RK, Witherspoon DJ, Jorde LB, Batzer MA. Alu elements and hominid phylogenetics. Proceedings of the National Academy of Sciences of the United States of America. 100: 12787-91. PMID 14561894 DOI: 10.1073/Pnas.2133766100  0.426
2003 Witherspoon DJ, Robertson HM. Neutral evolution of ten types of mariner transposons in the genomes of Caenorhabditis elegans and Caenorhabditis briggsae. Journal of Molecular Evolution. 56: 751-69. PMID 12911038 DOI: 10.1007/S00239-002-2450-X  0.431
2003 Lampe DJ, Witherspoon DJ, Soto-Adames FN, Robertson HM. Recent horizontal transfer of mellifera subfamily mariner transposons into insect lineages representing four different orders shows that selection acts only during horizontal transfer. Molecular Biology and Evolution. 20: 554-62. PMID 12654937 DOI: 10.1093/Molbev/Msg069  0.479
2003 Doak TG, Witherspoon DJ, Jahn CL, Herrick G. Selection on the genes of Euplotes crassus Tec1 and Tec2 transposons: Evolutionary appearance of a programmed frameshift in a Tec2 gene encoding a tyrosine family site-specific recombinase Eukaryotic Cell. 2: 95-102. PMID 12582126 DOI: 10.1128/Ec.2.1.95-102.2003  0.689
1999 Witherspoon DJ. Selective constraints on P-element evolution Molecular Biology and Evolution. 16: 472-478. PMID 10331273 DOI: 10.1093/Oxfordjournals.Molbev.A026129  0.474
1997 Doak TG, Witherspoon DJ, Paul Doerder F, Williams K, Herrick G. Conserved features of TBE1 transposons in ciliated protozoa Genetica. 101: 75-86. PMID 9465400 DOI: 10.1023/A:1018331118647  0.697
1997 Witherspoon DJ, Doak TG, Williams KR, Seegmiller A, Seger J, Herrick G. Selection on the protein-coding genes of the TBE1 family of transposable elements in the ciliates Oxytricha fallax and O. trifallax Molecular Biology and Evolution. 14: 696-706. PMID 9214742 DOI: 10.1093/Oxfordjournals.Molbev.A025809  0.726
1996 Seegmiller A, Williams KR, Hammersmith RL, Doak TG, Witherspoon D, Messick T, Storjohann LL, Herrick G. Internal eliminated sequences interrupting the Oxytricha 81 locus: Allelic divergence, conservation, conversions, and possible transposon origins Molecular Biology and Evolution. 13: 1351-1362. PMID 8952079 DOI: 10.1093/Oxfordjournals.Molbev.A025581  0.716
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