Patrick H. Bradley, Ph.D.
Affiliations: | 2005-2013 | Molecular Biology | Princeton University, Princeton, NJ |
| 2013-2020 | GIDB | Gladstone Institutes | |
| 2020- | Microbiology | Ohio State University, Columbus, Columbus, OH |
Area:
computational biology, microbiome, metabolism, bioinformatics, systems biologyWebsite:
https://bradleylab.scienceGoogle:
"Patrick H Bradley"Bio:
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Parents
Sign in to add mentor| Joshua D. Rabinowitz | grad student | 2005-2012 | Princeton (Chemistry Tree) | |
| (Thesis: Inferring Metabolic Regulation from High-Throughput Data) | ||||
| Olga G. Troyanskaya | grad student | 2005-2012 | Princeton | |
| (Thesis: Inferring Metabolic Regulation from High-Throughput Data) | ||||
| Katherine S. Pollard | post-doc | 2013- | Gladstone Institute (UCSF) (Evolution Tree) | |
Children
Sign in to add trainee| Stephanie Majernik | grad student | Ohio State | |
| Kathryn Kananen | research scientist | Ohio State |
Collaborators
Sign in to add collaborator| James Riley Broach | collaborator | 2010-2011 | Princeton (PombeTree) |
| David Botstein | collaborator | 2010-2013 | Princeton |
BETA: Related publications
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Publications
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| Rendina M, Turnbaugh PJ, Bradley PH. (2024) Human xenobiotic metabolism proteins have full-length and split homologs in the gut microbiome. Biorxiv : the Preprint Server For Biology |
| Majernik SN, Beaver L, Bradley PH. (2024) Small amounts of misassembly can have disproportionate effects on pangenome-based metagenomic analyses. Biorxiv : the Preprint Server For Biology |
| Kananen K, Veseli IA, Quiles Perez CJ, et al. (2024) Adaptive adjustment of significance thresholds produces large gains in microbial gene annotations and metabolic insights. Biorxiv : the Preprint Server For Biology |
| Spanogiannopoulos P, Kyaw TS, Guthrie BGH, et al. (2022) Host and gut bacteria share metabolic pathways for anti-cancer drug metabolism. Nature Microbiology |
| Bradley PH, Pollard KS. (2020) Building a chemical blueprint for human blood. Nature |
| Bradley PH, Pollard KS. (2019) phylogenize: correcting for phylogeny reveals genes associated with microbial distributions. Bioinformatics (Oxford, England) |
| Bradley PH, Gibney PA, Botstein D, et al. (2019) Minor Isozymes Tailor Yeast Metabolism to Carbon Availability. Msystems. 4 |
| Bradley PH, Nayfach S, Pollard KS. (2018) Phylogeny-corrected identification of microbial gene families relevant to human gut colonization. Plos Computational Biology. 14: e1006242 |
| Bradley PH, Pollard KS. (2017) Proteobacteria explain significant functional variability in the human gut microbiome. Microbiome. 5: 36 |
| Nayfach S, Bradley PH, Wyman SK, et al. (2015) Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes. Plos Computational Biology. 11: e1004573 |