Andrew D Smith
Affiliations: | Molecular and Computational Biology | University of Southern California, Los Angeles, CA, United States |
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| Dolzhenko E, Smith AD. (2014) Using beta-binomial regression for high-precision differential methylation analysis in multifactor whole-genome bisulfite sequencing experiments. Bmc Bioinformatics. 15: 215 |
| Song Q, Decato B, Hong EE, et al. (2013) A reference methylome database and analysis pipeline to facilitate integrative and comparative epigenomics. Plos One. 8: e81148 |
| Regulski M, Lu Z, Kendall J, et al. (2013) The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. Genome Research. 23: 1651-62 |
| Uren PJ, Bahrami-Samani E, Burns SC, et al. (2012) Site identification in high-throughput RNA-protein interaction data. Bioinformatics (Oxford, England). 28: 3013-20 |
| Araujo PR, Yoon K, Ko D, et al. (2012) Before It Gets Started: Regulating Translation at the 5' UTR. Comparative and Functional Genomics. 2012: 475731 |
| Molaro A, Hodges E, Fang F, et al. (2011) Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates. Cell. 146: 1029-41 |
| Hodges E, Molaro A, Dos Santos CO, et al. (2011) Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment. Molecular Cell. 44: 17-28 |
| Song Q, Smith AD. (2011) Identifying dispersed epigenomic domains from ChIP-Seq data. Bioinformatics (Oxford, England). 27: 870-1 |
| Zhang MQ, Smith AD. (2010) Challenges in Understanding Genome-Wide DNA Methylation Journal of Computer Science and Technology. 25: 26-34 |
| Smith AD, Chung WY, Hodges E, et al. (2009) Updates to the RMAP short-read mapping software. Bioinformatics (Oxford, England). 25: 2841-2 |