| Year |
Citation |
Score |
| 2024 |
Chappel JR, Kirkwood-Donelson KI, Dodds JN, Fleming J, Reif DM, Baker ES. Streamlining Phenotype Classification and Highlighting Feature Candidates: A Screening Method for Non-Targeted Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS) Data. Analytical Chemistry. PMID 39292613 DOI: 10.1021/acs.analchem.4c03256 |
0.755 |
|
| 2024 |
Kopczynski D, Ejsing CS, McDonald JG, Bamba T, Baker ES, Bertrand-Michel J, Brügger B, Coman C, Ellis SR, Garrett TJ, Griffiths WJ, Guan XL, Han X, Höring M, Holčapek M, et al. The Lipidomics Reporting Checklist A framework for transparency of lipidomic experiments and repurposing resource data. Journal of Lipid Research. 100621. PMID 39151590 DOI: 10.1016/j.jlr.2024.100621 |
0.473 |
|
| 2024 |
Boatman AK, Chappel JR, Polera ME, Dodds JN, Belcher SM, Baker ES. Assessing Per- and Polyfluoroalkyl Substances in Fish Fillet Using Non-Targeted Analyses. Environmental Science & Technology. PMID 39066709 DOI: 10.1021/acs.est.4c04299 |
0.702 |
|
| 2024 |
Qiao P, Odenkirk MT, Zheng W, Wang Y, Chen J, Xu W, Baker ES. Elucidating the Role of Lipid Interactions in Stabilizing the Membrane Protein KcsA. Biophysical Journal. PMID 39030907 DOI: 10.1016/j.bpj.2024.07.019 |
0.748 |
|
| 2024 |
Dodds JN, Kirkwood-Donelson KI, Boatman AK, Knappe DRU, Hall NS, Schnetzer A, Baker ES. Evaluating Solid Phase Adsorption Toxin Tracking (SPATT) for passive monitoring of per- and polyfluoroalkyl substances (PFAS) with Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS). The Science of the Total Environment. 174574. PMID 38981548 DOI: 10.1016/j.scitotenv.2024.174574 |
0.715 |
|
| 2024 |
Patel SK, Bons J, Rose JP, Chappel JR, Beres RL, Watson MA, Webster C, Burton JB, Bruderer R, Desprez PY, Reiter L, Campisi J, Baker ES, Schilling B. Exosomes Released from Senescent Cells and Circulatory Exosomes Isolated from Human Plasma Reveal Aging-associated Proteomic and Lipid Signatures. Biorxiv : the Preprint Server For Biology. PMID 38979258 DOI: 10.1101/2024.06.22.600215 |
0.757 |
|
| 2024 |
Solosky AM, Kirkwood-Donelson KI, Odenkirk MT, Baker ES. Recent additions and access to a multidimensional lipidomic database containing liquid chromatography, ion mobility spectrometry, and tandem mass spectrometry information. Analytical and Bioanalytical Chemistry. PMID 38814344 DOI: 10.1007/s00216-024-05351-4 |
0.809 |
|
| 2024 |
Kirkwood-Donelson KI, Chappel J, Tobin E, Dodds JN, Reif DM, DeWitt JC, Baker ES. Investigating mouse hepatic lipidome dysregulation following exposure to emerging per- and polyfluoroalkyl substances (PFAS). Chemosphere. 141654. PMID 38462188 DOI: 10.1016/j.chemosphere.2024.141654 |
0.698 |
|
| 2024 |
Odenkirk MT, Zheng X, Kyle JE, Stratton KG, Nicora CD, Bloodsworth KJ, Mclean CA, Masters CL, Monroe ME, Doecke JD, Smith RD, Burnum-Johnson KE, Roberts BR, Baker ES. Deciphering ApoE Genotype-Driven Proteomic and Lipidomic Alterations in Alzheimer's Disease Across Distinct Brain Regions. Journal of Proteome Research. PMID 38236019 DOI: 10.1021/acs.jproteome.3c00604 |
0.752 |
|
| 2023 |
Gentry EC, Collins SL, Panitchpakdi M, Belda-Ferre P, Stewart AK, Carrillo Terrazas M, Lu HH, Zuffa S, Yan T, Avila-Pacheco J, Plichta DR, Aron AT, Wang M, Jarmusch AK, Hao F, ... ... Baker ES, et al. Reverse metabolomics for the discovery of chemical structures from humans. Nature. PMID 38052229 DOI: 10.1038/s41586-023-06906-8 |
0.604 |
|
| 2023 |
Ryan JP, Kostelic MM, Hsieh CC, Powers J, Aspinwall C, Dodds JN, Schiel JE, Marty MT, Baker ES. Characterizing Adeno-Associated Virus Capsids with Both Denaturing and Intact Analysis Methods. Journal of the American Society For Mass Spectrometry. PMID 38010134 DOI: 10.1021/jasms.3c00321 |
0.822 |
|
| 2023 |
Kirkwood-Donelson KI, Dodds JN, Schnetzer A, Hall N, Baker ES. Uncovering per- and polyfluoroalkyl substances (PFAS) with nontargeted ion mobility spectrometry-mass spectrometry analyses. Science Advances. 9: eadj7048. PMID 37878714 DOI: 10.1126/sciadv.adj7048 |
0.753 |
|
| 2023 |
Stewart AK, Foley MH, Dougherty MK, McGill SK, Gulati AS, Gentry EC, Hagey LR, Dorrestein PC, Theriot CM, Dodds JN, Baker ES. Using Multidimensional Separations to Distinguish Isomeric Amino Acid-Bile Acid Conjugates and Assess Their Presence and Perturbations in Model Systems. Analytical Chemistry. 95: 15357-15366. PMID 37796494 DOI: 10.1021/acs.analchem.3c03057 |
0.764 |
|
| 2023 |
Boatman AK, Chappel JR, Polera ME, Dodds JN, Belcher SM, Baker ES. Assessing Per- and Polyfluoroalkyl Substances (PFAS) in Fish Fillet Using Non-Targeted Analyses. Biorxiv : the Preprint Server For Biology. PMID 37732276 DOI: 10.1101/2023.09.01.555938 |
0.704 |
|
| 2023 |
Zhu Y, Odenkirk MT, Qiao P, Zhang T, Schrecke S, Zhou M, Marty MT, Baker ES, Laganowsky A. Combining native mass spectrometry and lipidomics to uncover specific membrane protein-lipid interactions from natural lipid sources. Chemical Science. 14: 8570-8582. PMID 37593000 DOI: 10.1039/d3sc01482g |
0.761 |
|
| 2023 |
Bilbao A, Munoz N, Kim J, Orton DJ, Gao Y, Poorey K, Pomraning KR, Weitz K, Burnet M, Nicora CD, Wilton R, Deng S, Dai Z, Oksen E, Gee A, ... ... Baker ES, et al. PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements. Nature Communications. 14: 2461. PMID 37117207 DOI: 10.1038/s41467-023-37031-9 |
0.435 |
|
| 2023 |
Foley MH, Walker ME, Stewart AK, O'Flaherty S, Gentry EC, Patel S, Beaty VV, Allen G, Pan M, Simpson JB, Perkins C, Vanhoy ME, Dougherty MK, McGill SK, Gulati AS, ... ... Baker ES, et al. Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut. Nature Microbiology. PMID 36914755 DOI: 10.1038/s41564-023-01337-7 |
0.518 |
|
| 2022 |
Doyle MG, Odenkirk MT, Stewart AK, Nelson JP, Baker ES, De La Cruz F. Assessing the Fate of Dissolved Organic Compounds in Landfill Leachate and Wastewater Treatment Systems. Acs Es&T Water. 2: 2502-2509. PMID 36911356 DOI: 10.1021/acsestwater.2c00320 |
0.805 |
|
| 2022 |
Rainey MA, Watson CA, Asef CK, Foster MR, Baker ES, Fernández FM. CCS Predictor 2.0: An Open-Source Jupyter Notebook Tool for Filtering Out False Positives in Metabolomics. Analytical Chemistry. PMID 36473057 DOI: 10.1021/acs.analchem.2c03491 |
0.65 |
|
| 2022 |
Roman-Hubers AT, Aeppli C, Dodds JN, Baker ES, McFarlin KM, Letinski DJ, Zhao L, Mitchell DA, Parkerton TF, Prince RC, Nedwed T, Rusyn I. Temporal chemical composition changes in water below a crude oil slick irradiated with natural sunlight. Marine Pollution Bulletin. 185: 114360. PMID 36413931 DOI: 10.1016/j.marpolbul.2022.114360 |
0.67 |
|
| 2022 |
Butler KE, Baker ES. A High-Throughput Ion Mobility Spectrometry-Mass Spectrometry Screening Method for Opioid Profiling. Journal of the American Society For Mass Spectrometry. PMID 36136315 DOI: 10.1021/jasms.2c00186 |
0.679 |
|
| 2022 |
Witchey SK, Doyle MG, Fredenburg JD, St Armour G, Horman B, Odenkirk MT, Aylor DL, Baker ES, Patisaul HB. Impacts of Gestational FireMaster 550 (FM 550) Exposure on the Neonatal Cortex are Sex Specific and Largely Attributable to the Organophosphate Esters. Neuroendocrinology. PMID 36075192 DOI: 10.1159/000526959 |
0.763 |
|
| 2022 |
Kostelic MM, Ryan JP, Brown LS, Jackson TW, Hsieh CC, Zak CK, Sanders HM, Liu Y, Chen VS, Byrne M, Aspinwall CA, Baker ES, Marty MT. Stability and Dissociation of Adeno-Associated Viral Capsids by Variable Temperature-Charge Detection-Mass Spectrometry. Analytical Chemistry. PMID 35981215 DOI: 10.1021/acs.analchem.2c02378 |
0.749 |
|
| 2022 |
Kirkwood KI, Pratt BS, Shulman N, Tamura K, MacCoss MJ, MacLean BX, Baker ES. Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions. Nature Protocols. PMID 35831612 DOI: 10.1038/s41596-022-00714-6 |
0.847 |
|
| 2022 |
Foster M, Rainey M, Watson C, Dodds JN, Kirkwood KI, Fernández FM, Baker ES. Uncovering PFAS and Other Xenobiotics in the Dark Metabolome Using Ion Mobility Spectrometry, Mass Defect Analysis, and Machine Learning. Environmental Science & Technology. PMID 35653285 DOI: 10.1021/acs.est.2c00201 |
0.828 |
|
| 2022 |
Kostelic MM, Hsieh CC, Sanders HM, Zak CK, Ryan JP, Baker ES, Aspinwall CA, Marty MT. Surface Modified Nano-Electrospray Needles Improve Sensitivity for Native Mass Spectrometry. Journal of the American Society For Mass Spectrometry. 33: 1031-1037. PMID 35588532 DOI: 10.1021/jasms.2c00087 |
0.775 |
|
| 2022 |
Zhu Y, Schrecke S, Tang S, Odenkirk MT, Walker T, Stover L, Lyu J, Zhang T, Russell D, Baker ES, Yan X, Laganowsky A. Cupric Ions Selectively Modulate TRAAK-Phosphatidylserine Interactions. Journal of the American Chemical Society. PMID 35421309 DOI: 10.1021/jacs.2c00612 |
0.767 |
|
| 2022 |
Butler KE, Dodds JN, Flick T, Campuzano IDG, Baker ES. High-Resolution Demultiplexing (HRdm) Ion Mobility Spectrometry-Mass Spectrometry for Aspartic and Isoaspartic Acid Determination and Screening. Analytical Chemistry. 94: 6191-6199. PMID 35421308 DOI: 10.1021/acs.analchem.1c05533 |
0.837 |
|
| 2022 |
Roman-Hubers AT, Cordova AC, Rohde AM, Chiu WA, McDonald TJ, Wright FA, Dodds JN, Baker ES, Rusyn I. Characterization of Compositional Variability in Petroleum Substances. Fuel (London, England). 317. PMID 35250041 DOI: 10.1016/j.fuel.2022.123547 |
0.7 |
|
| 2022 |
Kirkwood KI, Fleming J, Nguyen H, Reif DM, Baker ES, Belcher SM. Utilizing Pine Needles to Temporally and Spatially Profile Per- and Polyfluoroalkyl Substances (PFAS). Environmental Science & Technology. PMID 35175744 DOI: 10.1021/acs.est.1c06483 |
0.82 |
|
| 2022 |
Rampler E, Baker ES, Kirkwood KI, Schwaiger-Haber M, Tam M, Jones MA, Sherman M. Empowering women and addressing underrepresentation in the field of mass spectrometry. Expert Review of Proteomics. 19: 1-3. PMID 35164649 DOI: 10.1080/14789450.2022.2039631 |
0.785 |
|
| 2022 |
Dodds JN, Wang L, Patti GJ, Baker ES. Combining Isotopologue Workflows and Simultaneous Multidimensional Separations to Detect, Identify, and Validate Metabolites in Untargeted Analyses. Analytical Chemistry. PMID 35089687 DOI: 10.1021/acs.analchem.1c04430 |
0.757 |
|
| 2022 |
Valdiviezo A, Aly NA, Luo YS, Cordova A, Casillas G, Foster M, Baker ES, Rusyn I. Analysis of per- and polyfluoroalkyl substances in Houston Ship Channel and Galveston Bay following a large-scale industrial fire using ion-mobility-spectrometry-mass spectrometry. Journal of Environmental Sciences (China). 115: 350-362. PMID 34969462 DOI: 10.1016/j.jes.2021.08.004 |
0.692 |
|
| 2021 |
Odenkirk MT, Horman BM, Dodds JN, Patisaul HB, Baker ES. Combining Micropunch Histology and Multidimensional Lipidomic Measurements for In-Depth Tissue Mapping. Acs Measurement Science Au. 2: 67-75. PMID 35647605 DOI: 10.1021/acsmeasuresciau.1c00035 |
0.805 |
|
| 2021 |
Kirkwood KI, Christopher MW, Burgess JL, Littau SR, Foster K, Richey K, Pratt BS, Shulman N, Tamura K, MacCoss MJ, MacLean BX, Baker ES. Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity. Journal of Proteome Research. PMID 34874736 DOI: 10.1021/acs.jproteome.1c00820 |
0.822 |
|
| 2021 |
Dodds JN, Baker ES. Improving the Speed and Selectivity of Newborn Screening Using Ion Mobility Spectrometry-Mass Spectrometry. Analytical Chemistry. 93: 17094-17102. PMID 34851605 DOI: 10.1021/acs.analchem.1c04267 |
0.76 |
|
| 2021 |
Zamith-Miranda D, Heyman HM, Burnet MC, Couvillion SP, Zheng X, Munoz N, Nelson WC, Kyle JE, Zink EM, Weitz KK, Bloodsworth KJ, Clair G, Zucker JD, Teuton JR, Payne SH, ... ... Baker ES, et al. A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets. Mbio. e0297221. PMID 34809453 DOI: 10.1128/mBio.02972-21 |
0.6 |
|
| 2021 |
Aly NA, Dodds JN, Luo YS, Grimm FA, Foster M, Rusyn I, Baker ES. Utilizing ion mobility spectrometry-mass spectrometry for the characterization and detection of persistent organic pollutants and their metabolites. Analytical and Bioanalytical Chemistry. PMID 34668045 DOI: 10.1007/s00216-021-03686-w |
0.82 |
|
| 2021 |
Bilbao A, Gibbons BC, Stow SM, Kyle JE, Bloodsworth KJ, Payne SH, Smith RD, Ibrahim YM, Baker ES, Fjeldsted JC. A Preprocessing Tool for Enhanced Ion Mobility-Mass Spectrometry-Based Omics Workflows. Journal of Proteome Research. PMID 34382401 DOI: 10.1021/acs.jproteome.1c00425 |
0.498 |
|
| 2021 |
Roman-Hubers AT, Cordova AC, Aly NA, McDonald TJ, Lloyd DT, Wright FA, Baker ES, Chiu WA, Rusyn I. Data Processing Workflow to Identify Structurally Related Compounds in Petroleum Substances Using Ion Mobility Spectrometry-Mass Spectrometry. Energy & Fuels : An American Chemical Society Journal. 35: 10529-10539. PMID 34366560 DOI: 10.1021/acs.energyfuels.1c00892 |
0.434 |
|
| 2021 |
Butler KE, Kalmar JG, Muddiman DC, Baker ES. Utilizing liquid chromatography, ion mobility spectrometry, and mass spectrometry to assess INLIGHT™ derivatized N-linked glycans in biological samples. Analytical and Bioanalytical Chemistry. PMID 34347113 DOI: 10.1007/s00216-021-03570-7 |
0.783 |
|
| 2021 |
Odenkirk MT, Reif DM, Baker ES. Multiomic Big Data Analysis Challenges: Increasing Confidence in the Interpretation of Artificial Intelligence Assessments. Analytical Chemistry. PMID 34029068 DOI: 10.1021/acs.analchem.0c04850 |
0.754 |
|
| 2021 |
Khadempour L, Kyle JE, Webb-Robertson BM, Nicora CD, Smith FB, Smith RD, Lipton MS, Currie CR, Baker ES, Burnum-Johnson KE. From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem. Msystems. 6. PMID 33758033 DOI: 10.1128/mSystems.01307-20 |
0.311 |
|
| 2021 |
Ligare MR, Morrison KA, Hewitt MA, Reveles JU, Govind N, Hernandez H, Baker ES, Clowers BH, Laskin J, Johnson GE. Ion Mobility Spectrometry Characterization of the Intermediate Hydrogen-Containing Gold Cluster Au(PPh)H. The Journal of Physical Chemistry Letters. 2502-2508. PMID 33667097 DOI: 10.1021/acs.jpclett.0c03664 |
0.563 |
|
| 2021 |
Butler KE, Takinami Y, Rainczuk A, Baker ES, Roberts BR. Utilizing Ion Mobility-Mass Spectrometry to Investigate the Unfolding Pathway of Cu/Zn Superoxide Dismutase. Frontiers in Chemistry. 9: 614595. PMID 33634076 DOI: 10.3389/fchem.2021.614595 |
0.728 |
|
| 2021 |
Luo YS, Chen Z, Blanchette AD, Zhou YH, Wright FA, Baker ES, Chiu WA, Rusyn I. Relationships Between Constituents of Energy Drinks and Beating Parameters in Human Induced Pluripotent Cell (iPSC)-Derived Cardiomyocytes. Food and Chemical Toxicology : An International Journal Published For the British Industrial Biological Research Association. 111979. PMID 33450301 DOI: 10.1016/j.fct.2021.111979 |
0.307 |
|
| 2020 |
Odenkirk MT, Stratton KG, Bramer LM, Webb-Robertson BM, Bloodsworth KJ, Monroe ME, Burnum-Johnson KE, Baker ES. From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions. Biomolecules. 11. PMID 33396843 DOI: 10.3390/biom11010040 |
0.733 |
|
| 2020 |
Roman-Hubers AT, McDonald TJ, Baker ES, Chiu WA, Rusyn I. A comparative analysis of analytical techniques for rapid oil spill identification. Environmental Toxicology and Chemistry. PMID 33315271 DOI: 10.1002/etc.4961 |
0.325 |
|
| 2020 |
Luo YS, Aly NA, McCord J, Strynar MJ, Chiu WA, Dodds JN, Baker ES, Rusyn I. Rapid Characterization of Emerging Per- and Polyfluoroalkyl Substances in Aqueous Film-Forming Foams Using Ion Mobility Spectrometry-Mass Spectrometry. Environmental Science & Technology. PMID 33176098 DOI: 10.1021/acs.est.0c04798 |
0.771 |
|
| 2020 |
Dodds JN, Alexander NLM, Kirkwood KI, Foster MR, Hopkins ZR, Knappe DRU, Baker ES. From Pesticides to Per- and Polyfluoroalkyl Substances: An Evaluation of Recent Targeted and Untargeted Mass Spectrometry Methods for Xenobiotics. Analytical Chemistry. PMID 33136371 DOI: 10.1021/acs.analchem.0c04359 |
0.791 |
|
| 2020 |
Odenkirk MT, Zin PPK, Ash JR, Reif DM, Fourches D, Baker ES. Structural-based connectivity and omic phenotype evaluations (SCOPE): a cheminformatics toolbox for investigating lipidomic changes in complex systems. The Analyst. PMID 33094747 DOI: 10.1039/d0an01638a |
0.773 |
|
| 2020 |
Orwoll ES, Wiedrick J, Nielson CM, Jacobs J, Baker ES, Piehowski P, Petyuk V, Gao Y, Shi T, Smith RD, Bauer DC, Cummings SR, Lapidus J. Proteomic assessment of serum biomarkers of longevity in older men. Aging Cell. e13253. PMID 33078901 DOI: 10.1111/acel.13253 |
0.637 |
|
| 2020 |
Odenkirk MT, Stratton KG, Gritsenko MA, Bramer LM, Webb-Robertson BM, Bloodsworth KJ, Weitz KK, Lipton AK, Monroe ME, Ash JR, Fourches D, Taylor BD, Burnum-Johnson KE, Baker ES. Unveiling molecular signatures of preeclampsia and gestational diabetes mellitus with multi-omics and innovative cheminformatics visualization tools. Molecular Omics. PMID 32966491 DOI: 10.1039/d0mo00074d |
0.744 |
|
| 2020 |
Kalmar JG, Butler KE, Baker ES, Muddiman DC. Enhanced protocol for quantitative N-linked glycomics analysis using Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT)™. Analytical and Bioanalytical Chemistry. PMID 32844281 DOI: 10.1007/S00216-020-02892-2 |
0.75 |
|
| 2020 |
Soper-Hopper MT, Vandegrift J, Baker ES, Fernández FM. Metabolite collision cross section prediction without energy-minimized structures. The Analyst. PMID 32583823 DOI: 10.1039/D0An00198H |
0.351 |
|
| 2020 |
Aly NA, Luo YS, Liu Y, Casillas G, McDonald TJ, Kaihatu JM, Jun M, Ellis N, Gossett S, Dodds JN, Baker ES, Bhandari S, Chiu WA, Rusyn I. Temporal and spatial analysis of per and polyfluoroalkyl substances in surface waters of Houston ship channel following a large-scale industrial fire incident. Environmental Pollution (Barking, Essex : 1987). 265: 115009. PMID 32574947 DOI: 10.1016/J.Envpol.2020.115009 |
0.691 |
|
| 2020 |
Dodds JN, Hopkins ZR, Knappe DRU, Baker ES. Rapid Characterization of Per- and Polyfluoroalkyl Substances (PFAS) by Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS). Analytical Chemistry. PMID 32011866 DOI: 10.1021/Acs.Analchem.9B05364 |
0.797 |
|
| 2020 |
Ekeloef M, Dodds JN, Khodjaniyazova S, Garrard KP, Baker ES, Muddiman DC. Coupling IR-MALDESI with Drift Tube Ion Mobility-Mass Spectrometry for High-Throughput Screening and Imaging Applications. Journal of the American Society For Mass Spectrometry. PMID 31971795 DOI: 10.1021/Jasms.9B00081 |
0.819 |
|
| 2020 |
Odenkirk MT, Baker ES. Utilizing Drift Tube Ion Mobility Spectrometry for the Evaluation of Metabolites and Xenobiotics. Methods in Molecular Biology (Clifton, N.J.). 2084: 35-54. PMID 31729652 DOI: 10.1007/978-1-0716-0030-6_2 |
0.83 |
|
| 2019 |
Dodds JN, Baker ES. Ion Mobility Spectrometry: Fundamental Concepts, Instrumentation, Applications, and the Road Ahead. Journal of the American Society For Mass Spectrometry. 30: 2185-2195. PMID 31944740 DOI: 10.1021/jasms.8b06240 |
0.777 |
|
| 2019 |
Burnum-Johnson KE, Zheng X, Dodds JN, Ash J, Fourches D, Nicora CD, Wendler JP, Metz TO, Waters KM, Jansson JK, Smith RD, Baker ES. Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples. Trends in Analytical Chemistry : Trac. 116: 292-299. PMID 31798197 DOI: 10.1016/J.Trac.2019.04.022 |
0.848 |
|
| 2019 |
Dodds JN, Baker ES. Ion Mobility Spectrometry: Fundamental Concepts, Instrumentation, Applications, and the Road Ahead. Journal of the American Society For Mass Spectrometry. PMID 31493234 DOI: 10.1007/S13361-019-02288-2 |
0.792 |
|
| 2019 |
Baker ES, Patti GJ. Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the 2018 ASMS Fall Workshop. Journal of the American Society For Mass Spectrometry. PMID 31440979 DOI: 10.1007/S13361-019-02295-3 |
0.386 |
|
| 2019 |
Zhang Y, Zhong Y, Connor AL, Miller DP, Cao R, Shen J, Song B, Baker ES, Tang Q, Pulavarti SVSRK, Liu R, Wang Q, Lu ZL, Szyperski T, Zeng H, et al. Folding and Assembly of Short α, β, γ-Hybrid Peptides: Minor Variations in Sequence and Drastic Differences in Higher-Level Structures. Journal of the American Chemical Society. PMID 31381306 DOI: 10.1021/Jacs.9B06094 |
0.359 |
|
| 2019 |
Zheng X, Smith FB, Aly NA, Cai J, Smith RD, Patterson AD, Baker ES. Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry. Analytical and Bioanalytical Chemistry. PMID 31098744 DOI: 10.1007/S00216-019-01869-0 |
0.773 |
|
| 2019 |
Plante PL, Francovic-Fontaine É, May JC, McLean JA, Baker ES, Laviolette F, Marchand M, Corbeil J. Predicting Ion Mobility Collision Cross-Sections Using a Deep Neural Network: DeepCCS. Analytical Chemistry. PMID 30932474 DOI: 10.1021/Acs.Analchem.8B05821 |
0.571 |
|
| 2019 |
Monge ME, Dodds JN, Baker ES, Edison AS, Fernández FM. Challenges in Identifying the Dark Molecules of Life. Annual Review of Analytical Chemistry (Palo Alto, Calif.). PMID 30883183 DOI: 10.1146/Annurev-Anchem-061318-114959 |
0.745 |
|
| 2018 |
Zheng X, Dupuis KT, Aly NA, Zhou Y, Smith FB, Tang K, Smith RD, Baker ES. Utilizing ion mobility spectrometry and mass spectrometry for the analysis of polycyclic aromatic hydrocarbons, polychlorinated biphenyls, polybrominated diphenyl ethers and their metabolites. Analytica Chimica Acta. 1037: 265-273. PMID 30292301 DOI: 10.1016/J.Aca.2018.02.054 |
0.771 |
|
| 2018 |
Nagy G, Attah IK, Garimella SVB, Tang K, Ibrahim YM, Baker ES, Smith RD. Unraveling the isomeric heterogeneity of glycans: ion mobility separations in structures for lossless ion manipulations. Chemical Communications (Cambridge, England). PMID 30264832 DOI: 10.1039/C8Cc06966B |
0.56 |
|
| 2018 |
Kedia K, Wendler JP, Baker ES, Burnum-Johnson KE, Jarsberg LG, Stratton KG, Wright AT, Piehowski PD, Gritsenko MA, Lewinsohn DM, Sigal GB, Weiner MH, Smith RD, Jacobs JM, Nahid P. Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis. Tuberculosis (Edinburgh, Scotland). 112: 52-61. PMID 30205969 DOI: 10.1016/J.Tube.2018.07.005 |
0.648 |
|
| 2018 |
Nagy G, Chouinard CD, Attah IK, Webb IK, Garimella SVB, Ibrahim YM, Baker ES, Smith RD. Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations. Electrophoresis. PMID 30168603 DOI: 10.1002/Elps.201800294 |
0.477 |
|
| 2018 |
Chouinard CD, Nagy G, Webb IK, Shi T, Baker ES, Prost SA, Liu T, Ibrahim YM, Smith RD. Improved Sensitivity and Separations for Phosphopeptides using Online LC Coupled with Structures for Lossless Ion Manipulations (SLIM) IM-MS. Analytical Chemistry. PMID 30118596 DOI: 10.1021/Acs.Analchem.8B02397 |
0.592 |
|
| 2018 |
Chouinard CD, Nagy G, Webb IK, Garimella SVB, Baker ES, Ibrahim YM, Smith RD. Rapid Ion Mobility Separations of Bile Acid Isomers using Cyclodextrin Adducts and Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 30102518 DOI: 10.1021/Acs.Analchem.8B02990 |
0.543 |
|
| 2018 |
MacLean BX, Pratt BS, Egertson JD, MacCoss MJ, Smith RD, Baker ES. Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions. Journal of the American Society For Mass Spectrometry. PMID 30047074 DOI: 10.1007/S13361-018-2028-5 |
0.598 |
|
| 2018 |
Nicora CD, Burnum-Johnson KE, Nakayasu ES, Casey CP, White RA, Roy Chowdhury T, Kyle JE, Kim YM, Smith RD, Metz TO, Jansson JK, Baker ES. The MPLEx Protocol for Multi-omic Analyses of Soil Samples. Journal of Visualized Experiments : Jove. PMID 29912205 DOI: 10.3791/57343 |
0.611 |
|
| 2018 |
Bilbao A, Gibbons BC, Slysz GW, Crowell KL, Monroe ME, Ibrahim YM, Smith RD, Payne SH, Baker ES. An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies. International Journal of Mass Spectrometry. 427: 91-99. PMID 29706793 DOI: 10.1016/J.Ijms.2017.11.003 |
0.561 |
|
| 2018 |
Kyle JE, Aly N, Zheng X, Burnum-Johnson KE, Smith RD, Baker ES. Evaluating lipid mediator structural complexity using ion mobility spectrometry combined with mass spectrometry. Bioanalysis. PMID 29494212 DOI: 10.4155/Bio-2017-0245 |
0.773 |
|
| 2018 |
Barran P, Baker E. Editorial overview: Omics. Current Opinion in Chemical Biology. 42: A1-A2. PMID 29482723 DOI: 10.1016/J.Cbpa.2018.02.007 |
0.511 |
|
| 2018 |
Orwoll ES, Wiedrick J, Jacobs J, Baker ES, Piehowski P, Petyuk V, Gao Y, Shi T, Smith RD, Bauer DC, Cummings SR, Nielson CM, Lapidus J. High-throughput serum proteomics for the identification of protein biomarkers of mortality in older men. Aging Cell. PMID 29399943 DOI: 10.1111/Acel.12717 |
0.637 |
|
| 2017 |
Zheng X, Aly NA, Zhou Y, Dupuis KT, Bilbao A, Paurus VL, Orton DJ, Wilson R, Payne SH, Smith RD, Baker ES. A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry. Chemical Science. 8: 7724-7736. PMID 29568436 DOI: 10.1039/C7Sc03464D |
0.735 |
|
| 2017 |
Zheng X, Smith RD, Baker ES. Recent advances in lipid separations and structural elucidation using mass spectrometry combined with ion mobility spectrometry, ion-molecule reactions and fragmentation approaches. Current Opinion in Chemical Biology. 42: 111-118. PMID 29223060 DOI: 10.1016/J.Cbpa.2017.11.009 |
0.738 |
|
| 2017 |
Poad BLJ, Zheng X, Mitchell TW, Smith RD, Baker ES, Blanksby SJ. Online ozonolysis combined with ion mobility-mass spectrometry provides a new platform for lipid isomer analyses. Analytical Chemistry. PMID 29220163 DOI: 10.1021/Acs.Analchem.7B04091 |
0.775 |
|
| 2017 |
Orton DJ, Tfaily MM, Moore RJ, LaMarche BL, Zheng X, Fillmore TL, Chu RK, Weitz KK, Monroe ME, Kelly RT, Smith RD, Baker ES. A Customizable Flow Injection System for Automated, High Throughput and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements. Analytical Chemistry. PMID 29161511 DOI: 10.1021/Acs.Analchem.7B02986 |
0.715 |
|
| 2017 |
Garabedian A, Benigni P, Ramirez CE, Baker ES, Liu T, Smith RD, Fernandez-Lima F. Towards Discovery and Targeted Peptide Biomarker Detection Using nanoESI-TIMS-TOF MS. Journal of the American Society For Mass Spectrometry. PMID 28889248 DOI: 10.1007/S13361-017-1787-8 |
0.538 |
|
| 2017 |
Stow SM, Causon T, Zheng X, Kurulugama RT, Mairinger T, May JC, Rennie EE, Baker ES, Smith RD, McLean JA, Hann S, Fjeldsted JC. An Interlaboratory Evaluation of Drift Tube Ion Mobility - Mass Spectrometry Collision Cross Section Measurements. Analytical Chemistry. PMID 28763190 DOI: 10.1021/Acs.Analchem.7B01729 |
0.811 |
|
| 2017 |
Ligare MR, Baker ES, Laskin J, Johnson GE. Ligand induced structural isomerism in phosphine coordinated gold clusters revealed by ion mobility mass spectrometry. Chemical Communications (Cambridge, England). 53: 7389-7392. PMID 28660917 DOI: 10.1039/C7Cc02251D |
0.372 |
|
| 2017 |
Zheng X, Deng L, Baker ES, Ibrahim YM, Petyuk VA, Smith RD. Distinguishing d- and l-aspartic and isoaspartic acids in amyloid β peptides with ultrahigh resolution ion mobility spectrometry. Chemical Communications (Cambridge, England). PMID 28654112 DOI: 10.1039/C7Cc03321D |
0.689 |
|
| 2017 |
Ma J, Casey CP, Zheng X, Ibrahim YM, Wilkins CS, Renslow RS, Thomas DG, Payne SH, Monroe ME, Smith RD, Teeguarden JG, Baker ES, Metz TO. PIXiE: An Algorithm for Automated Ion Mobility Arrival Time Extraction and Collision Cross Section Calculation using Global Data Association. Bioinformatics (Oxford, England). PMID 28505286 DOI: 10.1093/Bioinformatics/Btx305 |
0.785 |
|
| 2017 |
Deng L, Garimella SVB, Hamid AM, Webb IK, Attah IK, Norheim RV, Prost SA, Zheng X, Sandoval JA, Baker ES, Ibrahim YM, Smith RD. CRIMP Accumulation and Compression of Billions of Ions for Ion Mobility-MS using Traveling Waves in Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 28497957 DOI: 10.1021/Acs.Analchem.7B00189 |
0.719 |
|
| 2017 |
Burnum-Johnson KE, Baker ES, Metz TO. Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging. Placenta. PMID 28392013 DOI: 10.1016/J.Placenta.2017.03.016 |
0.605 |
|
| 2017 |
Deng L, Webb IK, Garimella SV, Hamid AM, Zheng X, Norheim RV, Prost SA, Anderson GA, Sandoval JA, Baker ES, Ibrahim YM, Smith RD. Serpentine Ultra-long Path with Extended Routing (SUPER) High Resolution Traveling Wave Ion Mobility-MS using Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 28332832 DOI: 10.1021/Acs.Analchem.7B00185 |
0.764 |
|
| 2017 |
Nielson CM, Wiedrick J, Shen J, Jacobs J, Baker ES, Baraff A, Piehowski P, Lee CG, Baratt A, Petyuk V, McWeeney S, Lim JY, Bauer DC, Lane NE, Cawthon PM, et al. Identification of Hip BMD Loss and Fracture Risk Markers through Population-based Serum Proteomics. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. PMID 28316103 DOI: 10.1002/Jbmr.3125 |
0.643 |
|
| 2017 |
Zheng X, Wojcik R, Zhang X, Ibrahim YM, Burnum-Johnson KE, Orton DJ, Monroe ME, Moore RJ, Smith RD, Baker ES. Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry for Enhanced Multidimensional Biological and Environmental Analyses. Annual Review of Analytical Chemistry (Palo Alto, Calif.). PMID 28301728 DOI: 10.1146/Annurev-Anchem-061516-045212 |
0.77 |
|
| 2017 |
Zheng X, Renslow RS, Makola MM, Webb IK, Deng L, Thomas DG, Govind N, Ibrahim YM, Kabanda MM, Dubery IA, Heyman HM, Smith RD, Madala NE, Baker ES. Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry. The Journal of Physical Chemistry Letters. PMID 28267339 DOI: 10.1021/Acs.Jpclett.6B03015 |
0.699 |
|
| 2017 |
Ibrahim YM, Hamid AM, Deng L, Garimella SV, Webb IK, Baker ES, Smith RD. New frontiers for mass spectrometry based upon structures for lossless ion manipulations. The Analyst. PMID 28262893 DOI: 10.1039/C7An00031F |
0.503 |
|
| 2017 |
Wojcik R, Webb IK, Deng L, Garimella SV, Prost SA, Ibrahim YM, Baker ES, Smith RD. Lipid and Glycolipid Isomer Analyses Using Ultra-High Resolution Ion Mobility Spectrometry Separations. International Journal of Molecular Sciences. 18. PMID 28106768 DOI: 10.3390/Ijms18010183 |
0.568 |
|
| 2017 |
Metz TO, Baker ES, Schymanski EL, Renslow RS, Thomas DG, Causon TJ, Webb IK, Hann S, Smith RD, Teeguarden JG. Integrating ion mobility spectrometry into mass spectrometry-based exposome measurements: what can it add and how far can it go? Bioanalysis. 9: 81-98. PMID 27921453 DOI: 10.4155/Bio-2016-0244 |
0.713 |
|
| 2016 |
Zhang X, Romm M, Zheng X, Zink EM, Kim YM, Burnum-Johnson KE, Orton DJ, Apffel A, Ibrahim YM, Monroe ME, Moore RJ, Smith JN, Ma J, Renslow RS, Thomas DG, ... ... Baker ES, et al. SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids. Clinical Mass Spectrometry (Del Mar, Calif.). 2: 1-10. PMID 29276770 DOI: 10.1016/J.Clinms.2016.11.002 |
0.796 |
|
| 2016 |
Deng L, Ibrahim YM, Baker ES, Aly NA, Hamid AM, Zhang X, Zheng X, Garimella SVB, Webb IK, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Smith RD. Ion Mobility Separations of Isomers based upon Long Path Length Structures for Lossless Ion Manipulations Combined with Mass Spectrometry. Chemistryselect. 1: 2396-2399. PMID 28936476 DOI: 10.1002/slct.201600460 |
0.765 |
|
| 2016 |
Ibrahim YM, Garimella SV, Prost SA, Wojcik R, Norheim RV, Baker ES, Rusyn I, Smith RD. Development of an Ion Mobility Spectrometry-Orbitrap Mass Spectrometer Platform. Analytical Chemistry. 88: 12152-12160. PMID 28193022 DOI: 10.1021/Acs.Analchem.6B03027 |
0.563 |
|
| 2016 |
Kyle JE, Casey CP, Stratton KG, Zink EM, Kim YM, Zheng X, Monroe ME, Weitz KK, Bloodsworth KJ, Orton DJ, Ibrahim YM, Moore RJ, Lee CG, Pedersen C, Orwoll E, ... ... Baker ES, et al. Comparing Identified and Statistically Significant Lipids and Polar Metabolites in 15-Year Old Serum and Dried Blood Spot Samples for Longitudinal Studies. Rapid Communications in Mass Spectrometry : Rcm. PMID 27958645 DOI: 10.1002/Rcm.7808 |
0.72 |
|
| 2016 |
Garimella SV, Hamid AM, Deng L, Ibrahim YM, Webb IK, Baker ES, Prost SA, Norheim RV, Anderson GA, Smith RD. Squeezing of Ion Populations and Peaks in Traveling Wave Ion Mobility Separations and Structures for Lossless Ion Manipulations Using Compression Ratio Ion Mobility Programming. Analytical Chemistry. 88: 11877-11885. PMID 27934097 DOI: 10.1021/Acs.Analchem.6B03660 |
0.545 |
|
| 2016 |
Deng L, Ibrahim YM, Garimella SV, Webb IK, Hamid AM, Norheim RV, Prost SA, Sandoval JA, Baker ES, Smith RD. Greatly Increasing Trapped Ion Populations for Mobility Separations Using Traveling Waves in Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 27715008 DOI: 10.1021/Acs.Analchem.6B02678 |
0.5 |
|
| 2016 |
Khadempour L, Burnum-Johnson KE, Baker ES, Nicora CD, Webb-Robertson BM, White RA, Monroe ME, Huang EL, Smith RD, Currie CR. The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates. Molecular Ecology. PMID 27696597 DOI: 10.1111/Mec.13872 |
0.33 |
|
| 2016 |
Burnum-Johnson KE, Nie S, Casey CP, Monroe ME, Orton DJ, Ibrahim YM, Gritsenko MA, Clauss TR, Shukla AK, Moore RJ, Purvine SO, Shi T, Qian W, Liu T, Baker ES, et al. Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry and Mass Spectrometry. Molecular & Cellular Proteomics : McP. PMID 27670688 DOI: 10.1074/Mcp.M116.061143 |
0.532 |
|
| 2016 |
Zheng X, Zhang X, Schocker NS, Renslow RS, Orton DJ, Khamsi J, Ashmus RA, Almeida IC, Tang K, Costello CE, Smith RD, Michael K, Baker ES. Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses. Analytical and Bioanalytical Chemistry. PMID 27604268 DOI: 10.1007/S00216-016-9866-4 |
0.767 |
|
| 2016 |
Deng L, Ibrahim YM, Hamid AM, Garimella SV, Webb IK, Zheng X, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Baker ES, Smith RD. Ultra-High Resolution Ion Mobility Separations Utilizing Traveling Waves in a 13-m Serpentine Path Length Structures for Lossless Ion Manipulations Module. Analytical Chemistry. PMID 27531027 DOI: 10.1021/Acs.Analchem.6B01915 |
0.742 |
|
| 2016 |
Hamid AM, Garimella SV, Ibrahim YM, Deng L, Zheng X, Webb IK, Anderson GA, Prost SA, Norheim RV, Tolmachev AV, Baker ES, Smith RD. Achieving high resolution ion mobility separations using traveling waves in compact multi-turn Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 27479234 DOI: 10.1021/Acs.Analchem.6B01914 |
0.737 |
|
| 2016 |
Webb IK, Garimella SV, Norheim RV, Baker ES, Ibrahim YM, Smith RD. A Structures for Lossless Ion Manipulations (SLIM) Module for Collision Induced Dissociation. Journal of the American Society For Mass Spectrometry. PMID 27098413 DOI: 10.1007/S13361-016-1397-X |
0.522 |
|
| 2016 |
Garimella SV, Ibrahim YM, Tang K, Webb IK, Baker ES, Tolmachev AV, Chen TC, Anderson GA, Smith RD. Spatial Ion Peak Compression and its Utility in Ion Mobility Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 27052738 DOI: 10.1007/S13361-016-1371-7 |
0.485 |
|
| 2016 |
Cong Y, Katipamula S, Trader CD, Orton DJ, Geng T, Baker ES, Kelly RT. Mass spectrometry-based monitoring of millisecond protein-ligand binding dynamics using an automated microfluidic platform. Lab On a Chip. PMID 27009517 DOI: 10.1039/C6Lc00183A |
0.32 |
|
| 2016 |
Liu R, Chen S, Baker ES, Smith RD, Zeng XC, Gong B. Correction: Surprising impact of remote groups on the folding-unfolding and dimer-chain equilibria of bifunctional H-bonding unimers. Chemical Communications (Cambridge, England). PMID 27003741 DOI: 10.1039/C6Cc90142E |
0.313 |
|
| 2016 |
Liu R, Cheng S, Baker ES, Smith RD, Zeng XC, Gong B. Surprising impact of remote groups on the folding-unfolding and dimer-chain equilibria of bifunctional H-bonding unimers. Chemical Communications (Cambridge, England). PMID 26830456 DOI: 10.1039/C6Cc00224B |
0.333 |
|
| 2016 |
Chen TC, Ibrahim YM, Webb IK, Garimella SV, Zhang X, Hamid AM, Deng L, Karnesky WE, Prost SA, Sandoval JA, Norheim RV, Anderson GA, Tolmachev AV, Baker ES, Smith RD. Mobility-Selected Ion Trapping and Enrichment Using Structures for Lossless Ion Manipulations. Analytical Chemistry. PMID 26752262 DOI: 10.1021/Acs.Analchem.5B03910 |
0.539 |
|
| 2016 |
Kyle JE, Zhang X, Weitz KK, Monroe ME, Ibrahim YM, Moore RJ, Cha J, Sun X, Lovelace ES, Wagoner J, Polyak SJ, Metz TO, Dey SK, Smith RD, Burnum-Johnson KE, ... Baker ES, et al. Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry. The Analyst. PMID 26734689 DOI: 10.1039/C5An02062J |
0.699 |
|
| 2016 |
White RA, Callister SJ, Moore RJ, Baker ES, Jansson JK. The past, present and future of microbiome analyses Nature Protocols. 11: 2049-2053. DOI: 10.1038/Nprot.2016.148 |
0.342 |
|
| 2015 |
Garimella SV, Ibrahim YM, Webb IK, Ipsen AB, Chen TC, Tolmachev AV, Baker ES, Anderson GA, Smith RD. Ion manipulations in structures for lossless ion manipulations (SLIM): computational evaluation of a 90° turn and a switch. The Analyst. 140: 6845-52. PMID 26289106 DOI: 10.1039/C5An00844A |
0.466 |
|
| 2015 |
Ibrahim YM, Baker ES, Danielson WF, Norheim RV, Prior DC, Anderson GA, Belov ME, Smith RD. Development of a New Ion Mobility (Quadrupole) Time-of-Flight Mass Spectrometer. International Journal of Mass Spectrometry. 377: 655-662. PMID 26185483 DOI: 10.1016/J.Ijms.2014.07.034 |
0.552 |
|
| 2015 |
Zhang X, Ibrahim YM, Chen TC, Kyle JE, Norheim RV, Monroe ME, Smith RD, Baker ES. Enhancing biological analyses with three dimensional field asymmetric ion mobility, low field drift tube ion mobility and mass spectrometry (μFAIMS/IMS-MS) separations. The Analyst. PMID 26140287 DOI: 10.1039/C5An00897B |
0.591 |
|
| 2015 |
Baker ES, Burnum-Johnson KE, Ibrahim YM, Orton DJ, Monroe ME, Kelly RT, Moore RJ, Zhang X, Théberge R, Costello CE, Smith RD. Enhancing bottom-up and top-down proteomic measurements with ion mobility separations. Proteomics. PMID 26046661 DOI: 10.1002/Pmic.201500048 |
0.562 |
|
| 2015 |
Zhang X, Garimella SV, Prost SA, Webb IK, Chen TC, Tang K, Tolmachev AV, Norheim RV, Baker ES, Anderson GA, Ibrahim YM, Smith RD. Ion Trapping, Storage, and Ejection in Structures for Lossless Ion Manipulations. Analytical Chemistry. 87: 6010-6. PMID 25971536 DOI: 10.1021/Acs.Analchem.5B00214 |
0.451 |
|
| 2015 |
Cha J, Burnum-Johnson KE, Bartos A, Li Y, Baker ES, Tilton SC, Webb-Robertson BJ, Piehowski PD, Monroe ME, Jegga AG, Murata S, Hirota Y, Dey SK. Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus. The Journal of Biological Chemistry. 290: 15337-49. PMID 25931120 DOI: 10.1074/Jbc.M115.655001 |
0.579 |
|
| 2015 |
Wu C, Liu T, Baker ES, Rodland KD, Smith RD. Mass spectrometry for biomarker development General Methods in Biomarker Research and Their Applications. 1: 17-48. DOI: 10.1007/978-94-007-7696-8_21 |
0.397 |
|
| 2014 |
Baker ES, Muddiman DC, Loo JA. Focus on advancing high performance mass spectrometry, honoring dr. Richard d. Smith, recipient of the 2013 award for a distinguished contribution in mass spectrometry. Journal of the American Society For Mass Spectrometry. 25: 1997-9. PMID 25326057 DOI: 10.1007/S13361-014-1007-8 |
0.595 |
|
| 2014 |
Prost SA, Crowell KL, Baker ES, Ibrahim YM, Clowers BH, Monroe ME, Anderson GA, Smith RD, Payne SH. Detecting and removing data artifacts in Hadamard transform ion mobility-mass spectrometry measurements. Journal of the American Society For Mass Spectrometry. 25: 2020-7. PMID 24796262 DOI: 10.1007/S13361-014-0895-Y |
0.693 |
|
| 2014 |
Ibrahim YM, Garimella SV, Tolmachev AV, Baker ES, Smith RD. Improving ion mobility measurement sensitivity by utilizing helium in an ion funnel trap. Analytical Chemistry. 86: 5295-9. PMID 24786390 DOI: 10.1021/Ac404250Z |
0.487 |
|
| 2014 |
Baker ES, Burnum-Johnson KE, Jacobs JM, Diamond DL, Brown RN, Ibrahim YM, Orton DJ, Piehowski PD, Purdy DE, Moore RJ, Danielson WF, Monroe ME, Crowell KL, Slysz GW, Gritsenko MA, et al. Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry. Molecular & Cellular Proteomics : McP. 13: 1119-27. PMID 24403597 DOI: 10.1074/Mcp.M113.034595 |
0.746 |
|
| 2013 |
Crowell KL, Baker ES, Payne SH, Ibrahim YM, Monroe ME, Slysz GW, LaMarche BL, Petyuk VA, Piehowski PD, Danielson WF, Anderson GA, Smith RD. Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry. International Journal of Mass Spectrometry. 354: 312-317. PMID 25089116 DOI: 10.1016/J.Ijms.2013.06.028 |
0.75 |
|
| 2013 |
Crowell KL, Slysz GW, Baker ES, LaMarche BL, Monroe ME, Ibrahim YM, Payne SH, Anderson GA, Smith RD. LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets. Bioinformatics (Oxford, England). 29: 2804-5. PMID 24008421 DOI: 10.1093/Bioinformatics/Btt465 |
0.582 |
|
| 2013 |
Merkley ED, Baker ES, Crowell KL, Orton DJ, Taverner T, Ansong C, Ibrahim YM, Burnet MC, Cort JR, Anderson GA, Smith RD, Adkins JN. Mixed-isotope labeling with LC-IMS-MS for characterization of protein-protein interactions by chemical cross-linking. Journal of the American Society For Mass Spectrometry. 24: 444-9. PMID 23423792 DOI: 10.1007/S13361-012-0565-X |
0.514 |
|
| 2012 |
Baker ES, Liu T, Petyuk VA, Burnum-Johnson KE, Ibrahim YM, Anderson GA, Smith RD. Mass spectrometry for translational proteomics: progress and clinical implications. Genome Medicine. 4: 63. PMID 22943415 DOI: 10.1186/Gm364 |
0.517 |
|
| 2012 |
Hengel SM, Floyd E, Baker ES, Zhao R, Wu S, Paša-Toli? L. Evaluation of SDS depletion using an affinity spin column and IMS-MS detection. Proteomics. 12: 3138-42. PMID 22936678 DOI: 10.1002/Pmic.201200168 |
0.472 |
|
| 2012 |
Burnum KE, Hirota Y, Baker ES, Yoshie M, Ibrahim YM, Monroe ME, Anderson GA, Smith RD, Daikoku T, Dey SK. Uterine deletion of Trp53 compromises antioxidant responses in the mouse decidua. Endocrinology. 153: 4568-79. PMID 22759378 DOI: 10.1210/En.2012-1335 |
0.331 |
|
| 2012 |
Angel TE, Aryal UK, Hengel SM, Baker ES, Kelly RT, Robinson EW, Smith RD. Mass spectrometry-based proteomics: existing capabilities and future directions. Chemical Society Reviews. 41: 3912-28. PMID 22498958 DOI: 10.1039/C2Cs15331A |
0.56 |
|
| 2010 |
Buchko GW, Niemann G, Baker ES, Belov ME, Smith RD, Heffron F, Adkins JN, McDermott JE. A multi-pronged search for a common structural motif in the secretion signal of Salmonella enterica serovar Typhimurium type III effector proteins. Molecular Biosystems. 6: 2448-58. PMID 20877914 DOI: 10.1039/C0Mb00097C |
0.403 |
|
| 2010 |
Ibrahim YM, Prior DC, Baker ES, Smith RD, Belov ME. Characterization of an Ion Mobility-Multiplexed Collision Induced Dissociation-Tandem Time-of-Flight Mass Spectrometry Approach. International Journal of Mass Spectrometry. 293: 34-44. PMID 20596241 DOI: 10.1016/J.Ijms.2010.03.009 |
0.573 |
|
| 2010 |
Shah AR, Agarwal K, Baker ES, Singhal M, Mayampurath AM, Ibrahim YM, Kangas LJ, Monroe ME, Zhao R, Belov ME, Anderson GA, Smith RD. Machine learning based prediction for peptide drift times in ion mobility spectrometry. Bioinformatics (Oxford, England). 26: 1601-7. PMID 20495001 DOI: 10.1093/Bioinformatics/Btq245 |
0.531 |
|
| 2010 |
Baker ES, Livesay EA, Orton DJ, Moore RJ, Danielson WF, Prior DC, Ibrahim YM, LaMarche BL, Mayampurath AM, Schepmoes AA, Hopkins DF, Tang K, Smith RD, Belov ME. An LC-IMS-MS platform providing increased dynamic range for high-throughput proteomic studies. Journal of Proteome Research. 9: 997-1006. PMID 20000344 DOI: 10.1021/Pr900888B |
0.567 |
|
| 2009 |
Page JS, Marginean I, Baker ES, Kelly RT, Tang K, Smith RD. Biases in ion transmission through an electrospray ionization-mass spectrometry capillary inlet. Journal of the American Society For Mass Spectrometry. 20: 2265-72. PMID 19815425 DOI: 10.1016/J.Jasms.2009.08.018 |
0.515 |
|
| 2009 |
Baker ES, Dupuis NF, Bowers MT. DNA hairpin, pseudoknot, and cruciform stability in a solvent-free environment. The Journal of Physical Chemistry. B. 113: 1722-7. PMID 19193169 DOI: 10.1021/Jp807529M |
0.729 |
|
| 2009 |
Baker ES, Dupuis NF, Bowers MT. Aminoglycoside antibiotics: A-site specific binding to 16S International Journal of Mass Spectrometry. 283: 105-111. DOI: 10.1016/J.Ijms.2009.02.010 |
0.685 |
|
| 2008 |
Metz TO, Page JS, Baker ES, Tang K, Ding J, Shen Y, Smith RD. High Resolution Separations and Improved Ion Production and Transmission in Metabolomics. Trends in Analytical Chemistry : Trac. 27: 205-214. PMID 19255623 DOI: 10.1016/J.Trac.2007.11.003 |
0.714 |
|
| 2008 |
Smargiasso N, Rosu F, Hsia W, Colson P, Baker ES, Bowers MT, De Pauw E, Gabelica V. G-quadruplex DNA assemblies: loop length, cation identity, and multimer formation. Journal of the American Chemical Society. 130: 10208-16. PMID 18627159 DOI: 10.1021/Ja801535E |
0.481 |
|
| 2008 |
Baker ES, Tang K, Danielson WF, Prior DC, Smith RD. Simultaneous fragmentation of multiple ions using IMS drift time dependent collision energies. Journal of the American Society For Mass Spectrometry. 19: 411-9. PMID 18226544 DOI: 10.1016/J.Jasms.2007.11.018 |
0.536 |
|
| 2007 |
Baker ES, Clowers BH, Li F, Tang K, Tolmachev AV, Prior DC, Belov ME, Smith RD. Ion mobility spectrometry-mass spectrometry performance using electrodynamic ion funnels and elevated drift gas pressures. Journal of the American Society For Mass Spectrometry. 18: 1176-87. PMID 17512752 DOI: 10.1016/J.Jasms.2007.03.031 |
0.726 |
|
| 2007 |
Baker ES, Bowers MT. B-DNA helix stability in a solvent-free environment. Journal of the American Society For Mass Spectrometry. 18: 1188-95. PMID 17434745 DOI: 10.1016/J.Jasms.2007.03.001 |
0.447 |
|
| 2007 |
Shvartsburg AA, Mashkevich SV, Baker ES, Smith RD. Optimization of algorithms for ion mobility calculations. The Journal of Physical Chemistry. A. 111: 2002-10. PMID 17300182 DOI: 10.1021/Jp066953M |
0.48 |
|
| 2007 |
Gabelica V, Baker ES, Teulade-Fichou MP, De Pauw E, Bowers MT. Stabilization and structure of telomeric and c-myc region intramolecular G-quadruplexes: the role of central cations and small planar ligands. Journal of the American Chemical Society. 129: 895-904. PMID 17243826 DOI: 10.1021/Ja065989P |
0.478 |
|
| 2006 |
Baker ES, Hong JW, Gaylord BS, Bazan GC, Bowers MT. PNA/dsDNA complexes: site specific binding and dsDNA biosensor applications. Journal of the American Chemical Society. 128: 8484-92. PMID 16802814 DOI: 10.1021/Ja060069S |
0.475 |
|
| 2006 |
Baker ES, Lee JT, Sessler JL, Bowers MT. Cyclo[n]pyrroles: size and site-specific binding to G-quadruplexes. Journal of the American Chemical Society. 128: 2641-8. PMID 16492050 DOI: 10.1021/Ja0564968 |
0.488 |
|
| 2006 |
Baker ES, Bernstein SL, Gabelica V, De Pauw E, Bowers MT. G-quadruplexes in telomeric repeats are conserved in a solvent-free environment International Journal of Mass Spectrometry. 253: 225-237. DOI: 10.1016/J.Ijms.2006.03.016 |
0.697 |
|
| 2005 |
Baker ES, Manard MJ, Gidden J, Bowers MT. Structural analysis of metal interactions with the dinucleotide duplex, dCG x dCG, using ion mobility mass spectrometry. The Journal of Physical Chemistry. B. 109: 4808-10. PMID 16863132 DOI: 10.1021/Jp0501190 |
0.803 |
|
| 2005 |
Baker ES, Bushnell JE, Wecksler SR, Lim MD, Manard MJ, Dupuis NF, Ford PC, Bowers MT. Probing shapes of bichromophoric metal-organic complexes using ion mobility mass spectrometry. Journal of the American Chemical Society. 127: 18222-8. PMID 16366575 DOI: 10.1021/Ja0553699 |
0.808 |
|
| 2005 |
Baker ES, Bernstein SL, Bowers MT. Structural characterization of G-quadruplexes in deoxyguanosine clusters using ion mobility mass spectrometry. Journal of the American Society For Mass Spectrometry. 16: 989-97. PMID 15908229 DOI: 10.1016/J.Jasms.2005.03.012 |
0.693 |
|
| 2005 |
Anderson SE, Baker ES, Mitchell C, Haddad TS, Bowers MT. Structure of hybrid polyhedral oligomeric silsesquioxane propyl methacrylate oligomers using ion mobility mass spectrometry and molecular mechanics Chemistry of Materials. 17: 2537-2545. DOI: 10.1021/Cm047868Z |
0.559 |
|
| 2005 |
Gidden J, Baker ES, Ferzoco A, Bowers MT. Structural motifs of DNA complexes in the gas phase International Journal of Mass Spectrometry. 240: 183-193. DOI: 10.1016/J.Ijms.2004.09.011 |
0.755 |
|
| 2004 |
Gidden J, Ferzoco A, Baker ES, Bowers MT. Duplex formation and the onset of helicity in poly d(CG)n oligonucleotides in a solvent-free environment. Journal of the American Chemical Society. 126: 15132-40. PMID 15548010 DOI: 10.1021/Ja046433+ |
0.763 |
|
| 2004 |
Baker ES, Hong JW, Gidden J, Bartholomew GP, Bazan GC, Bowers MT. Diastereomer assignment of an olefin-linked bis-paracyclophane by ion mobility mass spectrometry. Journal of the American Chemical Society. 126: 6255-7. PMID 15149222 DOI: 10.1021/Ja039486K |
0.783 |
|
| 2004 |
Baker ES, Gidden J, Ferzoco A, Bowers MT. Sodium stabilization of dinucleotide multiplexes in the gas phase Physical Chemistry Chemical Physics. 6: 2786-2795. DOI: 10.1039/B315727J |
0.768 |
|
| 2004 |
Baker ES, Gidden J, Anderson SE, Haddad TS, Bowers MT. Isomeric structural characterization of polyhedral oligomeric silsesquioxanes (POSS) with styryl and epoxy phenyl capping agents Nano Letters. 4: 779-785. DOI: 10.1021/Nl049957G |
0.741 |
|
| 2004 |
Jackson AT, Scrivens JH, Williams JP, Baker ES, Gidden J, Bowers MT. Microstructural and conformational studies of polyether copolymers International Journal of Mass Spectrometry. 238: 287-297. DOI: 10.1016/J.Ijms.2004.09.025 |
0.816 |
|
| 2004 |
Baker ES, Gidden J, Simonsick WJ, Grady MC, Bowers MT. Sequence dependent conformations of glycidyl methacrylate/butyl methacrylate copolymers in the gas phase International Journal of Mass Spectrometry. 238: 279-286. DOI: 10.1016/J.Ijms.2004.04.020 |
0.77 |
|
| 2003 |
Baker ES, Gidden J, Fee DP, Kemper PR, Anderson SE, Bowers MT. 3-Dimensional structural characterization of cationized polyhedral oligomeric silsesquioxanes (POSS) with styryl and phenylethyl capping agents International Journal of Mass Spectrometry. 227: 205-216. DOI: 10.1016/S1387-3806(03)00068-X |
0.751 |
|
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