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Jun Shimada, Ph.D. - Publications

Affiliations: 
2002 Harvard University, Cambridge, MA, United States 
Area:
Protein Folding and Design, Molecular Evolution, Drug Discovery
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10 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2004 Hubner IA, Shimada J, Shakhnovich EI. Commitment and nucleation in the protein G transition state. Journal of Molecular Biology. 336: 745-61. PMID 15095985 DOI: 10.1016/J.Jmb.2003.12.032  0.715
2003 Kussell E, Shimada J, Shakhnovich EI. Side-chain dynamics and protein folding. Proteins. 52: 303-21. PMID 12833553 DOI: 10.1002/Prot.10426  0.738
2002 Shimada J, Shakhnovich EI. The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation. Proceedings of the National Academy of Sciences of the United States of America. 99: 11175-80. PMID 12165568 DOI: 10.1073/Pnas.162268099  0.669
2002 Grzybowski BA, Ishchenko AV, Shimada J, Shakhnovich EI. From knowledge-based potentials to combinatorial lead design in silico. Accounts of Chemical Research. 35: 261-9. PMID 12020163 DOI: 10.1021/Ar970146B  0.643
2002 Kussell E, Shimada J, Shakhnovich EI. A structure-based method for derivation of all-atom potentials for protein folding. Proceedings of the National Academy of Sciences of the United States of America. 99: 5343-8. PMID 11943859 DOI: 10.1073/Pnas.072665799  0.737
2002 Shimada J, Ekins S, Elkin C, Shakhnovich EI, Wery JP. Integrating computer-based de novo drug design and multidimensional filtering for desirable drugs Drug Discovery Today: Targets. 1: 196-205. DOI: 10.1016/S1477-3627(02)02274-2  0.459
2001 Kussell E, Shimada J, Shakhnovich EI. Excluded volume in protein side-chain packing. Journal of Molecular Biology. 311: 183-93. PMID 11469867 DOI: 10.1006/Jmbi.2001.4846  0.725
2001 Shimada J, Kussell EL, Shakhnovich EI. The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation. Journal of Molecular Biology. 308: 79-95. PMID 11302709 DOI: 10.1006/Jmbi.2001.4586  0.756
2000 Shimada J, Ishchenko AV, Shakhnovich EI. Analysis of knowledge-based protein-ligand potentials using a self-consistent method. Protein Science : a Publication of the Protein Society. 9: 765-75. PMID 10794420 DOI: 10.1110/Ps.9.4.765  0.684
2000 Shakhnovich E, Kussell E, Shimada J. Folding thermodynamics and kinetics in all-atom simulations Journal of Molecular Graphics and Modelling. 18: 555. DOI: 10.1016/S1093-3263(00)80130-8  0.719
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