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Michelle M. Meyer, Ph.D. - Publications

Affiliations: 
2006 California Institute of Technology, Pasadena, CA 
Area:
Protein engineering, directed protein evolution, structure-guided protein recombination, biocatalysis, biofuels
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Mukherjee S, Retwitzer MD, Hubbell SM, Meyer MM, Barash D. A computational approach for the identification of distant homologs of bacterial riboswitches based on inverse RNA folding. Briefings in Bioinformatics. PMID 36951499 DOI: 10.1093/bib/bbad110  0.321
2020 Gray EC, Beringer DM, Meyer MM. Siblings or doppelgängers? Deciphering the evolution of structured cis-regulatory RNAs beyond homology. Biochemical Society Transactions. PMID 32869842 DOI: 10.1042/Bst20191060  0.357
2019 Crum M, Ram-Mohan N, Meyer MM. Regulatory context drives conservation of glycine riboswitch aptamers. Plos Computational Biology. 15: e1007564. PMID 31860665 DOI: 10.1371/Journal.Pcbi.1007564  0.421
2018 Babina AM, Parker DJ, Li GW, Meyer MM. Fitness advantages conferred by the L20-interacting RNA cis-regulator of ribosomal protein synthesis in Bacillus subtilis. Rna (New York, N.Y.). PMID 29925569 DOI: 10.1261/Rna.065011.117  0.386
2018 Meyer MM. rRNA Mimicry in RNA Regulation of Gene Expression. Microbiology Spectrum. 6. PMID 29546840 DOI: 10.1128/Microbiolspec.Rwr-0006-2017  0.401
2017 Babina AM, Lea NE, Meyer MM. In Vivo Behavior of the Tandem Glycine Riboswitch in Bacillus subtilis. Mbio. 8. PMID 29089431 DOI: 10.1128/Mbio.01602-17  0.369
2017 Pei S, Slinger BL, Meyer MM. Recognizing RNA structural motifs in HT-SELEX data for ribosomal protein S15. Bmc Bioinformatics. 18: 298. PMID 28587636 DOI: 10.1186/S12859-017-1704-Y  0.381
2016 Slinger BL, Meyer MM. RNA regulators responding to ribosomal protein S15 are frequent in sequence space. Nucleic Acids Research. PMID 27580716 DOI: 10.1093/Nar/Gkw754  0.414
2016 Meyer MM. The role of mRNA structure in bacterial translational regulation. Wiley Interdisciplinary Reviews. Rna. PMID 27301829 DOI: 10.1002/Wrna.1370  0.34
2015 Slinger BL, Newman H, Lee Y, Pei S, Meyer MM. Co-evolution of Bacterial Ribosomal Protein S15 with Diverse mRNA Regulatory Structures. Plos Genetics. 11: e1005720. PMID 26675164 DOI: 10.1371/Journal.Pgen.1005720  0.432
2015 Babina AM, Soo MW, Fu Y, Meyer MM. An S6:S18 complex inhibits translation of E. coli rpsF. Rna (New York, N.Y.). PMID 26447183 DOI: 10.1261/Rna.049544.115  0.371
2015 Pei S, Anthony JS, Meyer MM. Sampled ensemble neutrality as a feature to classify potential structured RNAs. Bmc Genomics. 16: 35. PMID 25649229 DOI: 10.1186/S12864-014-1203-8  0.411
2014 Dotu I, Garcia-Martin JA, Slinger BL, Mechery V, Meyer MM, Clote P. Complete RNA inverse folding: computational design of functional hammerhead ribozymes. Nucleic Acids Research. 42: 11752-62. PMID 25209235 DOI: 10.1093/Nar/Gku740  0.349
2014 Slinger BL, Deiorio-Haggar K, Anthony JS, Gilligan MM, Meyer MM. Discovery and validation of novel and distinct RNA regulators for ribosomal protein S15 in diverse bacterial phyla. Bmc Genomics. 15: 657. PMID 25104606 DOI: 10.1186/1471-2164-15-657  0.417
2014 Fu Y, Deiorio-Haggar K, Soo MW, Meyer MM. Bacterial RNA motif in the 5' UTR of rpsF interacts with an S6:S18 complex. Rna (New York, N.Y.). 20: 168-76. PMID 24310371 DOI: 10.1261/Rna.041285.113  0.414
2013 Deiorio-Haggar K, Anthony J, Meyer MM. RNA structures regulating ribosomal protein biosynthesis in bacilli. Rna Biology. 10: 1180-4. PMID 23611891 DOI: 10.4161/Rna.24151  0.387
2013 Fu Y, Deiorio-Haggar K, Anthony J, Meyer MM. Most RNAs regulating ribosomal protein biosynthesis in Escherichia coli are narrowly distributed to Gammaproteobacteria. Nucleic Acids Research. 41: 3491-503. PMID 23396277 DOI: 10.1093/Nar/Gkt055  0.414
2012 Zarringhalam K, Meyer MM, Dotu I, Chuang JH, Clote P. Integrating chemical footprinting data into RNA secondary structure prediction. Plos One. 7: e45160. PMID 23091593 DOI: 10.1371/Journal.Pone.0045160  0.324
2011 Meyer MM, Hammond MC, Salinas Y, Roth A, Sudarsan N, Breaker RR. Challenges of ligand identification for riboswitch candidates. Rna Biology. 8: 5-10. PMID 21317561 DOI: 10.4161/Rna.8.1.13865  0.331
2011 Saab-Rincon G, Li Y, Meyer M, Carbone M, Landwehr M, Arnold FH. Protein Engineering by Structure-Guided SCHEMA Recombination Protein Engineering Handbook, Volume 1 & Volume 2. 2: 481-492. DOI: 10.1002/9783527634026.ch20  0.686
2009 Weinberg Z, Perreault J, Meyer MM, Breaker RR. Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis. Nature. 462: 656-9. PMID 19956260 DOI: 10.1038/Nature08586  0.37
2009 Poiata E, Meyer MM, Ames TD, Breaker RR. A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria. Rna (New York, N.Y.). 15: 2046-56. PMID 19776155 DOI: 10.1261/Rna.1824209  0.326
2009 Meyer MM, Ames TD, Smith DP, Weinberg Z, Schwalbach MS, Giovannoni SJ, Breaker RR. Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'. Bmc Genomics. 10: 268. PMID 19531245 DOI: 10.1186/1471-2164-10-268  0.386
2008 Meyer MM, Roth A, Chervin SM, Garcia GA, Breaker RR. Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria. Rna (New York, N.Y.). 14: 685-95. PMID 18305186 DOI: 10.1261/Rna.937308  0.406
2006 Meyer MM, Hiraga K, Arnold FH. Combinatorial recombination of gene fragments to construct a library of chimeras. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 26.2. PMID 18429308 DOI: 10.1002/0471140864.Ps2602S44  0.458
2006 Meyer MM, Hochrein L, Arnold FH. Structure-guided SCHEMA recombination of distantly related beta-lactamases. Protein Engineering, Design & Selection : Peds. 19: 563-70. PMID 17090554 DOI: 10.1093/Protein/Gzl045  0.603
2005 Bloom JD, Meyer MM, Meinhold P, Otey CR, MacMillan D, Arnold FH. Evolving strategies for enzyme engineering. Current Opinion in Structural Biology. 15: 447-52. PMID 16006119 DOI: 10.1016/J.Sbi.2005.06.004  0.725
2005 Drummond DA, Silberg JJ, Meyer MM, Wilke CO, Arnold FH. On the conservative nature of intragenic recombination. Proceedings of the National Academy of Sciences of the United States of America. 102: 5380-5. PMID 15809422 DOI: 10.1073/Pnas.0500729102  0.723
2003 Meyer MM, Silberg JJ, Voigt CA, Endelman JB, Mayo SL, Wang ZG, Arnold FH. Library analysis of SCHEMA-guided protein recombination. Protein Science : a Publication of the Protein Society. 12: 1686-93. PMID 12876318 DOI: 10.1110/Ps.0306603  0.691
2002 Segura MJ, Lodeiro S, Meyer MM, Patel AJ, Matsuda SP. Directed evolution experiments reveal mutations at cycloartenol synthase residue His477 that dramatically alter catalysis. Organic Letters. 4: 4459-62. PMID 12465912 DOI: 10.1021/Ol0269897  0.328
2002 Meyer MM, Xu R, Matsuda SP. Directed evolution to generate cycloartenol synthase mutants that produce lanosterol. Organic Letters. 4: 1395-8. PMID 11950371 DOI: 10.1021/Ol0257225  0.338
2000 Godzina SM, Lovato MA, Meyer MM, Foster KA, Wilson WK, Gu W, de Hostos EL, Matsuda SP. Cloning and characterization of the Dictyostelium discoideum cycloartenol synthase cDNA. Lipids. 35: 249-55. PMID 10783001 DOI: 10.1007/S11745-000-0520-3  0.393
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