Daniel W. Sirkis - Publications

Affiliations: 
University of California, San Francisco, San Francisco, CA 

9/32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Bonham LW, Sirkis DW, Yokoyama JS. The Transcriptional Landscape of Microglial Genes in Aging and Neurodegenerative Disease. Frontiers in Immunology. 10: 1170. PMID 31214167 DOI: 10.3389/fimmu.2019.01170  0.305
2018 Geier EG, Bourdenx M, Storm NJ, Cochran JN, Sirkis DW, Hwang JH, Bonham LW, Ramos EM, Diaz A, Van Berlo V, Dokuru D, Nana AL, Karydas A, Balestra ME, Huang Y, et al. Rare variants in the neuronal ceroid lipofuscinosis gene MFSD8 are candidate risk factors for frontotemporal dementia. Acta Neuropathologica. PMID 30382371 DOI: 10.1007/S00401-018-1925-9  0.34
2017 Sirkis DW, Aparicio RE, Schekman R. Neurodegeneration-associated mutant TREM2 proteins abortively cycle between the ER and ER-Golgi intermediate compartment. Molecular Biology of the Cell. PMID 28768830 DOI: 10.1091/Mbc.E17-06-0423  0.379
2017 Bonham LW, Sirkis DW, Fan J, Aparicio RE, Tse M, Ramos EM, Wang Q, Coppola G, Rosen HJ, Miller BL, Yokoyama JS. Identification of a rare coding variant in TREM2 in a Chinese individual with Alzheimer's disease. Neurocase. 23: 65-69. PMID 28376694 DOI: 10.1080/13554794.2017.1294182  0.325
2016 Sirkis DW, Bonham LW, Aparicio RE, Geier EG, Ramos EM, Wang Q, Karydas A, Miller ZA, Miller BL, Coppola G, Yokoyama JS. Rare TREM2 variants associated with Alzheimer's disease display reduced cell surface expression. Acta Neuropathologica Communications. 4: 98. PMID 27589997 DOI: 10.1186/S40478-016-0367-7  0.3
2014 Guo Y, Sirkis DW, Schekman R. Protein sorting at the trans-Golgi network. Annual Review of Cell and Developmental Biology. 30: 169-206. PMID 25150009 DOI: 10.1146/Annurev-Cellbio-100913-013012  0.417
2013 Asensio CS, Sirkis DW, Maas JW, Egami K, To TL, Brodsky FM, Shu X, Cheng Y, Edwards RH. Self-assembly of VPS41 promotes sorting required for biogenesis of the regulated secretory pathway. Developmental Cell. 27: 425-37. PMID 24210660 DOI: 10.1016/J.Devcel.2013.10.007  0.604
2013 Sirkis DW, Edwards RH, Asensio CS. Widespread dysregulation of peptide hormone release in mice lacking adaptor protein AP-3. Plos Genetics. 9: e1003812. PMID 24086151 DOI: 10.1371/Journal.Pgen.1003812  0.592
2010 Asensio CS, Sirkis DW, Edwards RH. RNAi screen identifies a role for adaptor protein AP-3 in sorting to the regulated secretory pathway. The Journal of Cell Biology. 191: 1173-87. PMID 21149569 DOI: 10.1083/Jcb.201006131  0.611
Low-probability matches (unlikely to be authored by this person)
2019 Bonham LW, Sirkis DW, Yokoyama JS. O5‐10‐02: The Transcriptional Landscape Of Microglial Genes In Aging And Neurodegenerative Disease Alzheimers & Dementia. 15. DOI: 10.1016/J.Jalz.2019.06.4889  0.28
2019 Sirkis DW, Geier EG, Bonham LW, Karch CM, Yokoyama JS. Recent advances in the genetics of frontotemporal dementia. Current Genetic Medicine Reports. 7: 41-52. PMID 31687268 DOI: 10.1007/S40142-019-0160-6  0.275
2019 Sirkis DW, Bonham LW, Karch CM, Yokoyama JS. Immunological signatures in frontotemporal lobar degeneration. Current Opinion in Neurology. PMID 30672824 DOI: 10.1097/Wco.0000000000000665  0.252
2015 Li N, Maly DJ, Chanthery YH, Sirkis DW, Nakamura JL, Berger MS, James CD, Shokat KM, Weiss WA, Persson AI. Radiotherapy followed by aurora kinase inhibition targets tumor-propagating cells in human glioblastoma. Molecular Cancer Therapeutics. 14: 419-28. PMID 25522764 DOI: 10.1158/1535-7163.Mct-14-0526  0.239
2019 Bonham LW, Sirkis DW, Hess CP, Sugrue LP, Yokoyama JS. The Radiogenomics of Late-onset Alzheimer Disease. Topics in Magnetic Resonance Imaging : Tmri. 28: 325-334. PMID 31794505 DOI: 10.1097/RMR.0000000000000222  0.236
2016 Sirkis DW, Aparicio RE, Schekman R. P4-303: Biochemical Analysis of Trem2 Disease Mutations Alzheimer's & Dementia. 12: P1149-P1150. DOI: 10.1016/J.Jalz.2016.07.046  0.216
2021 Sirkis DW, Bonham LW, Yokoyama JS. The Role of Microglia in Inherited White-Matter Disorders and Connections to Frontotemporal Dementia. The Application of Clinical Genetics. 14: 195-207. PMID 33833548 DOI: 10.2147/TACG.S245029  0.212
2023 Sirkis DW, Yokoyama JS. Role for cell death pathway in Alzheimer's disease. Science (New York, N.Y.). 381: 1156-1157. PMID 37708264 DOI: 10.1126/science.adk2009  0.183
2022 Sirkis DW, Bonham LW, Johnson TP, La Joie R, Yokoyama JS. Dissecting the clinical heterogeneity of early-onset Alzheimer's disease. Molecular Psychiatry. PMID 35393555 DOI: 10.1038/s41380-022-01531-9  0.182
2023 Wu S, Hernandez Villegas NC, Sirkis DW, Thomas-Wright I, Wade-Martins R, Schekman R. Unconventional secretion of α-synuclein mediated by palmitoylated DNAJC5 oligomers. Elife. 12. PMID 36626307 DOI: 10.7554/eLife.85837  0.18
2014 Yokoyama JS, Sirkis DW, Miller BL. C9ORF72 hexanucleotide repeats in behavioral and motor neuron disease: clinical heterogeneity and pathological diversity. American Journal of Neurodegenerative Disease. 3: 1-18. PMID 24753999  0.158
2023 Pasquini L, Pereira FL, Seddighi S, Zeng Y, Wei Y, Illán-Gala I, Vatsavayai SC, Friedberg A, Lee AJ, Brown JA, Spina S, Grinberg LT, Sirkis DW, Bonham LW, Yokoyama JS, et al. FTLD targets brain regions expressing recently evolved genes. Medrxiv : the Preprint Server For Health Sciences. PMID 37961381 DOI: 10.1101/2023.10.27.23297687  0.157
2022 Bonham LW, Geier EG, Sirkis DW, Leong JK, Ramos EM, Wang Q, Karydas A, Lee SE, Sturm VE, Sawyer RP, Friedberg A, Ichida JK, Gitler AD, Sugrue L, Cordingley M, et al. Radiogenomics of expansion carriers reveals global transposable element de-repression and enables prediction of thalamic atrophy and clinical impairment. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 36446586 DOI: 10.1523/JNEUROSCI.1448-22.2022  0.154
2024 Broce IJ, Sirkis DW, Nillo RM, Bonham LW, Lee SE, Miller BL, Castruita PA, Sturm VE, Sugrue LS, Desikan RS, Yokoyama JS. gene networks in the human brain correlate with cortical thickness in C9-FTD and implicate vulnerable cell types. Frontiers in Neuroscience. 18: 1258996. PMID 38469573 DOI: 10.3389/fnins.2024.1258996  0.153
2023 Broce IJ, Sirkis DW, Nillo RM, Bonham LW, Lee SE, Miller B, Castruita P, Sturm VE, Sugrue LS, Desikan RS, Yokoyama JS. gene networks in the human brain correlate with cortical thickness in C9-FTD and implicate vulnerable cell types. Biorxiv : the Preprint Server For Biology. PMID 37503230 DOI: 10.1101/2023.07.17.549377  0.153
2023 Sirkis DW, Solsberg CW, Johnson TP, Geier EG, Bonham LW, Miller BL, Rabinovici GD, Yokoyama JS. Expansion of interferon signaling-associated gene (ISAG) T cells in early-onset Alzheimer's disease. Biorxiv : the Preprint Server For Biology. PMID 37823036 DOI: 10.1101/2023.09.26.559634  0.148
2023 Ogonowski N, Santamaria-Garcia H, Baez S, Lopez A, Laserna A, Garcia-Cifuentes E, Ayala-Ramirez P, Zarante I, Suarez-Obando F, Reyes P, Kauffman M, Cochran N, Schulte M, Sirkis DW, Spina S, et al. Frontotemporal dementia presentation in patients with heterozygous p.H157Y variant of . Journal of Medical Genetics. PMID 36813542 DOI: 10.1136/jmg-2022-108627  0.146
2023 Mantyh WG, Cochran JN, Taylor JW, Broce IJ, Geier EG, Bonham LW, Anderson AG, Sirkis DW, Joie R, Iaccarino L, Chaudhary K, Edwards L, Strom A, Grant H, Allen IE, et al. Early-onset Alzheimer's disease explained by polygenic risk of late-onset disease? Alzheimer's & Dementia (Amsterdam, Netherlands). 15: e12482. PMID 37780862 DOI: 10.1002/dad2.12482  0.13
2024 Sirkis DW, Warly Solsberg C, Johnson TP, Bonham LW, Oddi AP, Geier EG, Miller BL, Rabinovici GD, Yokoyama JS. Expansion of highly interferon-responsive T cells in early-onset Alzheimer's disease. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. PMID 38829682 DOI: 10.1002/alz.13892  0.12
2008 Vargas MR, Johnson DA, Sirkis DW, Messing A, Johnson JA. Nrf2 activation in astrocytes protects against neurodegeneration in mouse models of familial amyotrophic lateral sclerosis. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 13574-81. PMID 19074031 DOI: 10.1523/Jneurosci.4099-08.2008  0.118
2023 Sirkis DW, Warly Solsberg C, Johnson TP, Bonham LW, Sturm VE, Lee SE, Rankin KP, Rosen HJ, Boxer AL, Seeley WW, Miller BL, Geier EG, Yokoyama JS. Single-cell RNA-seq reveals alterations in peripheral CX3CR1 and nonclassical monocytes in familial tauopathy. Genome Medicine. 15: 53. PMID 37464408 DOI: 10.1186/s13073-023-01205-3  0.096
2023 Goodman AJ, Scircle A, Kimble A, Harris W, Calvitti B, Sirkis D, Mathurin L, Grassi V, Ranville JF, Bednar AJ. Critical metal geochemistry in groundwaters influenced by dredged material. The Science of the Total Environment. 884: 163725. PMID 37116809 DOI: 10.1016/j.scitotenv.2023.163725  0.055
2004 Sirkis D, Stevens G, Bechtel T. Remote Sensing, Visualization and Modeling of the Diamond Coal Mine in Hazleton, PA Journal American Society of Mining and Reclamation. 2004: 1728-1749. DOI: 10.21000/JASMR04011728  0.01
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