Adam E. Osborne, Ph.D. - Related publications

2011 Molecular and Cell Biology Brandeis University, Waltham, MA, United States 
Molecular Biology, Biochemistry, Medicine and Surgery
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30 most relevant papers in past 60 days:
Year Citation  Score
2022 Park J, Lee J, Park J. The investigation of intraspecific characteristics and comparative analyses of the complete mitochondrial genome of (Linnaeus, 1758) (Coleoptera: Ptinidae) assembled from public NGS raw reads of the black truffle, . Science Progress. 105: 368504211072355. PMID 35040745 DOI: 10.1177/00368504211072355   
2022 Reis ALM, Deveson IW, Madala BS, Wong T, Barker C, Xu J, Lennon N, Tong W, Mercer TR, . Using synthetic chromosome controls to evaluate the sequencing of difficult regions within the human genome. Genome Biology. 23: 19. PMID 35022065 DOI: 10.1186/s13059-021-02579-6   
2022 Wei F, Jia X, Wang Y, Yang Y, Wang J, Gao C, Wang Y. The complete mitochondrial genome of (Siphonaptera: Pulicidae). Mitochondrial Dna. Part B, Resources. 7: 170-171. PMID 35005236 DOI: 10.1080/23802359.2021.2017368   
2022 Okada T, Sun X, McIlfatrick S, St John JC. Low guanine content and biased nucleotide distribution in vertebrate mtDNA can cause overestimation of non-CpG methylation. Nar Genomics and Bioinformatics. 4: lqab119. PMID 35047811 DOI: 10.1093/nargab/lqab119   
2022 Lee J, Jung J. First record of the complete mitochondrial genome and phylogenetic analysis of Claparède, 1862 (Annelida; Clitellata; Oligochaeta). Mitochondrial Dna. Part B, Resources. 7: 177-179. PMID 35036560 DOI: 10.1080/23802359.2021.1972485   
2022 Li M, Lei T, Wang G, Wang L. Characterization of the complete mitochondrial genome of Kiritshenko, 1930 (Hemiptera: Notonectidae) and its phylogenetic implications. Mitochondrial Dna. Part B, Resources. 7: 64-65. PMID 34926826 DOI: 10.1080/23802359.2021.2008831   
2022 Delghandi M, Delghandi MP, Goddard S. The Significance of PCR Primer Design in Genetic Diversity Studies: Exemplified by Recent Research into the Genetic Structure of Marine Species. Methods in Molecular Biology (Clifton, N.J.). 2392: 3-15. PMID 34773611 DOI: 10.1007/978-1-0716-1799-1_1   
2022 Zheng Y, Yang D, Rong J, Chen L, Zhu Q, He T, Chen L, Ye J, Fan L, Gao Y, Zhang H, Gu L. Allele-aware chromosome-scale assembly of the allopolyploid genome of hexaploid Ma Bamboo (Dendrocalamus latiflorus Munro). Journal of Integrative Plant Biology. PMID 34990066 DOI: 10.1111/jipb.13217   
2022 de Boer E, Yaldiz B, Denommé-Pichon AS, Matalonga L, Laurie S, , Steyaert W, de Reuver R, Gilissen C, Kwint M, Pfundt R, , Verloes A, Willemsen MAAP, de Vries BBA, et al. Genome-wide variant calling in reanalysis of exome sequencing data uncovered a pathogenic TUBB3 variant. European Journal of Medical Genetics. 65: 104402. PMID 34863918 DOI: 10.1016/j.ejmg.2021.104402   
2022 Xiong D, Zhang X, Shi M, Wang N, He P, Dong Z, Zhong J, Luo J, Wang Y, Yu J, Wei H. Developing an Amplification Refractory Mutation System-Quantitative Reverse Transcription-PCR Assay for Rapid and Sensitive Screening of SARS-CoV-2 Variants of Concern. Microbiology Spectrum. e0143821. PMID 34985323 DOI: 10.1128/spectrum.01438-21   
2022 Ma W, Jing X, Wei X, Huang Y. The complete mitochondrial genome of the forest crested lizard, (Squamata, Agamidae) in China by the next generation sequencing. Mitochondrial Dna. Part B, Resources. 7: 141-143. PMID 34993340 DOI: 10.1080/23802359.2021.2008822   
2022 Sreenivasan R, Bell K, van den Bergen J, Robevska G, Belluoccio D, Dahiya R, Leong GM, Dulon J, Touraine P, Tucker E, Ayers K, Sinclair A. Whole exome sequencing reveals copy number variants in individuals with disorders of sex development. Molecular and Cellular Endocrinology. 111570. PMID 35051551 DOI: 10.1016/j.mce.2022.111570   
2022 Liu Y, Shan B, Yang C, Wang L, Zhang G, Sun D. The complete mitochondrial genome and phylogenetic analysis of the reticulated swellshark: Chan, 1966. Mitochondrial Dna. Part B, Resources. 7: 180-181. PMID 35028412 DOI: 10.1080/23802359.2021.2015266   
2022 Kimbrel JA, Jeffrey BM, Ward CS. Prokaryotic Genome Annotation. Methods in Molecular Biology (Clifton, N.J.). 2349: 193-214. PMID 34718997 DOI: 10.1007/978-1-0716-1585-0_10   
2022 Arana C, Liang C, Brock M, Zhang B, Zhou J, Chen L, Cantarel B, SoRelle J, Hooper LV, Raj P. A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome. Plos One. 17: e0261014. PMID 35025877 DOI: 10.1371/journal.pone.0261014   
2022 Gao JF, Mao RF, Li Y, Sun YY, Gao ZY, Zhang XG, Jin ZH, An Q, Zhang ZH, Zhang AH, Wei W, Lan Z, Wang CR. Characterization of the mitochondrial genome of and insights into the phylogeny of Spirurina. International Journal For Parasitology. Parasites and Wildlife. 17: 35-42. PMID 34976723 DOI: 10.1016/j.ijppaw.2021.12.001   
2022 Marin M, Vargas R, Harris M, Jeffrey B, Epperson LE, Durbin D, Strong M, Salfinger M, Iqbal Z, Akhundova I, Vashakidze S, Crudu V, Rosenthal A, Farhat MR. Benchmarking the empirical accuracy of short-read sequencing across the M. tuberculosis genome. Bioinformatics (Oxford, England). PMID 35020793 DOI: 10.1093/bioinformatics/btac023   
2022 Li JJ, Liu C, Wang D, Guo DQ, Du HH. Characterization and analysis of complete chloroplast genome of (Blanco) Merrill. Mitochondrial Dna. Part B, Resources. 7: 89-90. PMID 34993321 DOI: 10.1080/23802359.2021.2009386   
2022 Deng Y, He J. Characterization of the complete mitochondrial genome of (Aspergillaceae, Eurotiales), isolated from soy sauce fermentation system. Mitochondrial Dna. Part B, Resources. 7: 76-78. PMID 34993316 DOI: 10.1080/23802359.2021.2008832   
2022 Yao X, Lu Z, Song Y, Hu X, Corlett RT. A chromosome-scale genome assembly for the holly (Ilex polyneura) provides insights into genomic adaptations to elevation in Southwest China. Horticulture Research. 9. PMID 35031793 DOI: 10.1093/hr/uhab049   
2022 Liang ZR, Lei JM, Zhang H, Li YQ, Zhang B. The complete chloroplast genome sequence of (Annonaceae). Mitochondrial Dna. Part B, Resources. 7: 19-20. PMID 34912957 DOI: 10.1080/23802359.2021.2005495   
2022 Zhang Z. KaKs_calculator 3.0: Calculating selective pressure on coding and non-coding sequences. Genomics, Proteomics & Bioinformatics. PMID 34990803 DOI: 10.1016/j.gpb.2021.12.002   
2022 Wang J, Chen T, Xu Y, Jin J, Yu T, Ren N, Chen X, Yang J, Zhu S, Chen J. Complete Genome Sequence of sp. Strain C5510, Isolated from Pacific Ocean Seawater. Microbiology Resource Announcements. e0085721. PMID 35049338 DOI: 10.1128/mra.00857-21   
2022 Gamaarachchi H, Samarakoon H, Jenner SP, Ferguson JM, Amos TG, Hammond JM, Saadat H, Smith MA, Parameswaran S, Deveson IW. Fast nanopore sequencing data analysis with SLOW5. Nature Biotechnology. PMID 34980914 DOI: 10.1038/s41587-021-01147-4   
2022 Nicolas J, Tempel S, Fiston-Lavier AS, Cherif E. Finding and Characterizing Repeats in Plant Genomes. Methods in Molecular Biology (Clifton, N.J.). 2443: 327-385. PMID 35037215 DOI: 10.1007/978-1-0716-2067-0_18   
2022 Kim D, Lee J, Cho CH, Kim EJ, Bhattacharya D, Yoon HS. Group II intron and repeat-rich red algal mitochondrial genomes demonstrate the dynamic recent history of autocatalytic RNAs. Bmc Biology. 20: 2. PMID 34996446 DOI: 10.1186/s12915-021-01200-3   
2022 Zhu B, Joo L, Zhang T, Koka H, Lee D, Shi J, Lee P, Wang D, Wang F, Chan WC, Law SH, Tsoi YK, Tse GM, Lai SW, Wu C, et al. Comparison of somatic mutation landscapes in Chinese versus European breast cancer patients. Hgg Advances. 3: 100076. PMID 35047861 DOI: 10.1016/j.xhgg.2021.100076   
2022 Afridi OK, Bibi N, Haider SA, Sabiha B, Jan H, Khan AA, Akhter S, Khan V, Ali J. Genomic Characterization of SARS-CoV2 from Peshawar Pakistan Using Next-Generation Sequencing. Current Microbiology. 79: 48. PMID 34982246 DOI: 10.1007/s00284-021-02743-y   
2022 Lu N, Chen X, Pan Z, Cai L, Cao Y. Characterization of the complete mitochondrial genome of (Ellis & Everh, 1893) (Dothideomycetes: Capnodiales). Mitochondrial Dna. Part B, Resources. 7: 130-131. PMID 34993336 DOI: 10.1080/23802359.2021.2013745   
2022 Adams S, Spotz G, Babcock R, Butler C, Conger S, Crew M, Garcia S, Gonzalez J, Hodges J, Martinez A, Munoz S, O'Grady C, Quirl A, Sefcik K, Taylor T, et al. Complete Genome Sequence of Bacteriophage Fizzles, Isolated from Microbacterium foliorum. Microbiology Resource Announcements. 11: e0107721. PMID 34989620 DOI: 10.1128/MRA.01077-21