Jeffrey D. Silberman - Publications

Cell & Molecular Biology University of Arkansas, Little Rock, AR 
Systematic Biology, Microbiology Biology, Evolution and Development Biology

48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Vargová R, Hanousková P, Salamonová J, Žihala D, Silberman JD, Eliáš M, Čepička I. Evidence for an Independent Hydrogenosome-to-Mitosome Transition in the CL3 Lineage of Fornicates. Frontiers in Microbiology. 13: 866459. PMID 35663895 DOI: 10.3389/fmicb.2022.866459  0.443
2022 Céza V, Kotyk M, Kubánková A, Yubuki N, Šťáhlavský F, Silberman JD, Čepička I. Free-living Trichomonads are Unexpectedly Diverse. Protist. 173: 125883. PMID 35660751 DOI: 10.1016/j.protis.2022.125883  0.392
2018 Schuler GA, Tice AK, Pearce RA, Foreman E, Stone J, Gammill S, Willson JD, Reading C, Silberman JD, Brown MW. Phylogeny and Classification of Novel Diversity in Sainouroidea (Cercozoa, Rhizaria) Sheds Light on a Highly Diverse and Divergent Clade. Protist. 169: 853-874. PMID 30415103 DOI: 10.1016/J.Protis.2018.08.002  0.826
2017 Kang S, Tice AK, Spiegel FW, Silberman JD, Pánek T, Cepicka I, Kostka M, Kosakyan A, Alcântara DM, Roger AJ, Shadwick LL, Smirnov A, Kudryavstev A, Lahr DJG, Brown MW. Between a pod and a hard test: the deep evolution of amoebae. Molecular Biology and Evolution. PMID 28505375 DOI: 10.1093/Molbev/Msx162  0.791
2017 Leger MM, Kolisko M, Kamikawa R, Stairs CW, Kume K, Čepička I, Silberman JD, Andersson JO, Xu F, Yabuki A, Eme L, Zhang Q, Takishita K, Inagaki Y, Simpson AGB, et al. Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes. Nature Ecology & Evolution. 1: 0092. PMID 28474007 DOI: 10.1038/S41559-017-0092  0.761
2016 Gawryluk RM, Kamikawa R, Stairs CW, Silberman JD, Brown MW, Roger AJ. The Earliest Stages of Mitochondrial Adaptation to Low Oxygen Revealed in a Novel Rhizarian. Current Biology : Cb. PMID 27666965 DOI: 10.1016/J.Cub.2016.08.025  0.781
2016 Tice AK, Silberman JD, Walthall AC, Le KN, Spiegel FW, Brown MW. Sorodiplophrys stercorea: Another Novel Lineage of Sorocarpic Multicellularity. The Journal of Eukaryotic Microbiology. PMID 26940948 DOI: 10.1111/Jeu.12311  0.769
2016 Bass D, Silberman JD, Brown MW, Tice AK, Jousset A, Geisen S, Hartikainen H. Coprophilic amoebae and flagellates, including Guttulinopsis, Rosculus and Helkesimastix, characterise a divergent and diverse rhizarian radiation and contribute to a large diversity of faecal-associated protists. Environmental Microbiology. PMID 26914587 DOI: 10.1111/1462-2920.13235  0.82
2015 Zhang Q, Táborský P, Silberman JD, Pánek T, Čepička I, Simpson AG. Marine Isolates of Trimastix marina Form a Plesiomorphic Deep-branching Lineage within Preaxostyla, Separate from Other Known Trimastigids (Paratrimastix n. gen.). Protist. 166: 468-91. PMID 26312987 DOI: 10.1016/J.Protis.2015.07.003  0.675
2013 Brown MW, Sharpe SC, Silberman JD, Heiss AA, Lang BF, Simpson AG, Roger AJ. Phylogenomics demonstrates that breviate flagellates are related to opisthokonts and apusomonads. Proceedings. Biological Sciences / the Royal Society. 280: 20131755. PMID 23986111 DOI: 10.1098/Rspb.2013.1755  0.824
2013 Harding T, Brown MW, Plotnikov A, Selivanova E, Park JS, Gunderson JH, Baumgartner M, Silberman JD, Roger AJ, Simpson AG. Amoeba stages in the deepest branching heteroloboseans, including Pharyngomonas: evolutionary and systematic implications. Protist. 164: 272-86. PMID 23021907 DOI: 10.1016/J.Protis.2012.08.002  0.786
2012 Brown MW, Kolisko M, Silberman JD, Roger AJ. Aggregative multicellularity evolved independently in the eukaryotic supergroup Rhizaria. Current Biology : Cb. 22: 1123-7. PMID 22608512 DOI: 10.1016/J.Cub.2012.04.021  0.807
2012 Takishita K, Kolisko M, Komatsuzaki H, Yabuki A, Inagaki Y, Cepicka I, Smejkalová P, Silberman JD, Hashimoto T, Roger AJ, Simpson AG. Multigene phylogenies of diverse Carpediemonas-like organisms identify the closest relatives of 'amitochondriate' diplomonads and retortamonads. Protist. 163: 344-55. PMID 22364773 DOI: 10.1016/J.Protis.2011.12.007  0.836
2012 Pánek T, Silberman JD, Yubuki N, Leander BS, Cepicka I. Diversity, evolution and molecular systematics of the Psalteriomonadidae, the main lineage of anaerobic/microaerophilic heteroloboseans (excavata: discoba). Protist. 163: 807-31. PMID 22192530 DOI: 10.1016/J.Protis.2011.11.002  0.536
2012 Brown MW, Silberman JD, Spiegel FW. A contemporary evaluation of the acrasids (Acrasidae, Heterolobosea, Excavata). European Journal of Protistology. 48: 103-23. PMID 22154141 DOI: 10.1016/J.Ejop.2011.10.001  0.829
2011 Brown MW, Silberman JD, Spiegel FW. "Slime molds" among the Tubulinea (Amoebozoa): molecular systematics and taxonomy of Copromyxa. Protist. 162: 277-87. PMID 21112814 DOI: 10.1016/J.Protis.2010.09.003  0.805
2010 Barberà MJ, Ruiz-Trillo I, Tufts JY, Bery A, Silberman JD, Roger AJ. Sawyeria marylandensis (Heterolobosea) has a hydrogenosome with novel metabolic properties. Eukaryotic Cell. 9: 1913-24. PMID 21037180 DOI: 10.1128/Ec.00122-10  0.815
2010 Brown MW, Silberman JD, Spiegel FW. A morphologically simple species of Acrasis (Heterolobosea, Excavata), Acrasis helenhemmesae n. sp. The Journal of Eukaryotic Microbiology. 57: 346-53. PMID 20497285 DOI: 10.1111/J.1550-7408.2010.00481.X  0.808
2010 Kolisko M, Silberman JD, Cepicka I, Yubuki N, Takishita K, Yabuki A, Leander BS, Inouye I, Inagaki Y, Roger AJ, Simpson AG. A wide diversity of previously undetected free-living relatives of diplomonads isolated from marine/saline habitats. Environmental Microbiology. 12: 2700-10. PMID 20482740 DOI: 10.1111/J.1462-2920.2010.02239.X  0.835
2010 Yubuki N, Leander BS, Silberman JD. Ultrastructure and molecular phylogenetic position of a novel phagotrophic stramenopile from low oxygen environments: Rictus lutensis gen. et sp. nov. (Bicosoecida, incertae sedis). Protist. 161: 264-78. PMID 20034852 DOI: 10.1016/J.Protis.2009.10.004  0.43
2010 Romeralo M, Rajguru SN, Silberman JD, Landolt JC, Fiz O, Stephenson SL. Population structure of the social amoeba Dictyostelium rosarium based on rDNA Fungal Ecology. 3: 379-385. DOI: 10.1016/J.Funeco.2010.05.001  0.413
2009 Shadwick LL, Spiegel FW, Shadwick JD, Brown MW, Silberman JD. Eumycetozoa = Amoebozoa?: SSUrDNA phylogeny of protosteloid slime molds and its significance for the amoebozoan supergroup. Plos One. 4: e6754. PMID 19707546 DOI: 10.1371/Journal.Pone.0006754  0.822
2009 Brown MW, Spiegel FW, Silberman JD. Phylogeny of the "forgotten" cellular slime mold, Fonticula alba, reveals a key evolutionary branch within Opisthokonta. Molecular Biology and Evolution. 26: 2699-709. PMID 19692665 DOI: 10.1093/Molbev/Msp185  0.817
2009 Minge MA, Silberman JD, Orr RJ, Cavalier-Smith T, Shalchian-Tabrizi K, Burki F, Skjaeveland A, Jakobsen KS. Evolutionary position of breviate amoebae and the primary eukaryote divergence. Proceedings. Biological Sciences / the Royal Society. 276: 597-604. PMID 19004754 DOI: 10.1098/Rspb.2008.1358  0.56
2008 Hampl V, Silberman JD, Stechmann A, Diaz-Triviño S, Johnson PJ, Roger AJ. Genetic evidence for a mitochondriate ancestry in the 'amitochondriate' flagellate Trimastix pyriformis. Plos One. 3: e1383. PMID 18167542 DOI: 10.1371/Journal.Pone.0001383  0.8
2007 Brown MW, Spiegel FW, Silberman JD. Amoeba at attention: phylogenetic affinity of Sappinia pedata. The Journal of Eukaryotic Microbiology. 54: 511-9. PMID 18070328 DOI: 10.1111/J.1550-7408.2007.00292.X  0.807
2007 Gill EE, Diaz-Triviño S, Barberà MJ, Silberman JD, Stechmann A, Gaston D, Tamas I, Roger AJ. Novel mitochondrion-related organelles in the anaerobic amoeba Mastigamoeba balamuthi. Molecular Microbiology. 66: 1306-20. PMID 18045382 DOI: 10.1111/J.1365-2958.2007.05979.X  0.77
2006 Stechmann A, Baumgartner M, Silberman JD, Roger AJ. The glycolytic pathway of Trimastix pyriformis is an evolutionary mosaic. Bmc Evolutionary Biology. 6: 101. PMID 17123440 DOI: 10.1186/1471-2148-6-101  0.693
2004 Silberman JD, Collins AG, Gershwin LA, Johnson PJ, Roger AJ. Ellobiopsids of the genus Thalassomyces are alveolates. The Journal of Eukaryotic Microbiology. 51: 246-52. PMID 15134262 DOI: 10.1111/J.1550-7408.2004.Tb00555.X  0.763
2003 O'Kelly CJ, Silberman JD, Amaral Zettler LA, Nerad TA, Sogin ML. Monopylocystis visvesvarai n. gen., n. sp. and Sawyeria marylandensis n. gen., n. sp.: two new amitochondrial heterolobosean amoebae from anoxic environments. Protist. 154: 281-90. PMID 13677454 DOI: 10.1078/143446103322166563  0.489
2003 Peglar MT, Amaral Zettler LA, Anderson OR, Nerad TA, Gillevet PM, Mullen TE, Frasca S, Silberman JD, O'Kelly CJ, Sogin ML. Two new small-subunit ribosomal RNA gene lineages within the subclass gymnamoebia. The Journal of Eukaryotic Microbiology. 50: 224-32. PMID 12836881 DOI: 10.1111/J.1550-7408.2003.Tb00122.X  0.48
2003 Walker G, Silberman JD, Karpov SA, Preisfeld A, Foster P, Frolov AO, Novozhilov Y, Sogin ML. An ultrastructural and molecular study of Hyperamoeba dachnaya, n. sp., and its relationship to the mycetozoan slime moulds European Journal of Protistology. 39: 319-336. DOI: 10.1078/0932-4739-00906  0.363
2002 Simpson AG, Roger AJ, Silberman JD, Leipe DD, Edgcomb VP, Jermiin LS, Patterson DJ, Sogin ML. Evolutionary history of "early-diverging" eukaryotes: the excavate taxon Carpediemonas is a close relative of Giardia. Molecular Biology and Evolution. 19: 1782-91. PMID 12270904 DOI: 10.1093/Oxfordjournals.Molbev.A004000  0.805
2002 Langford TD, Silberman JD, Weiland ME, Svärd SG, McCaffery JM, Sogin ML, Gillin FD. Giardia lamblia: identification and characterization of Rab and GDI proteins in a genome survey of the ER to Golgi endomembrane system. Experimental Parasitology. 101: 13-24. PMID 12243734 DOI: 10.1016/S0014-4894(02)00037-1  0.358
2002 Roger AJ, Silberman JD. Cell evolution: mitochondria in hiding. Nature. 418: 827-9. PMID 12192393 DOI: 10.1038/418827A  0.672
2002 Silberman JD, Simpson AG, Kulda J, Cepicka I, Hampl V, Johnson PJ, Roger AJ. Retortamonad flagellates are closely related to diplomonads--implications for the history of mitochondrial function in eukaryote evolution. Molecular Biology and Evolution. 19: 777-86. PMID 11961110 DOI: 10.1093/Oxfordjournals.Molbev.A004135  0.837
2001 Medina M, Collins AG, Silberman JD, Sogin ML. Evaluating hypotheses of basal animal phylogeny using complete sequences of large and small subunit rRNA. Proceedings of the National Academy of Sciences of the United States of America. 98: 9707-12. PMID 11504944 DOI: 10.1073/Pnas.171316998  0.455
2001 McArthur AG, Knodler LA, Silberman JD, Davids BJ, Gillin FD, Sogin ML. The evolutionary origins of eukaryotic protein disulfide isomerase domains: new evidence from the Amitochondriate protist Giardia lamblia. Molecular Biology and Evolution. 18: 1455-63. PMID 11470836 DOI: 10.1093/Oxfordjournals.Molbev.A003931  0.354
2001 Dacks JB, Silberman JD, Simpson AG, Moriya S, Kudo T, Ohkuma M, Redfield RJ. Oxymonads are closely related to the excavate taxon Trimastix. Molecular Biology and Evolution. 18: 1034-44. PMID 11371592 DOI: 10.1093/Oxfordjournals.Molbev.A003875  0.737
2000 Amaral Zettler LA, Nerad TA, O'Kelly CJ, Peglar MT, Gillevet PM, Silberman JD, Sogin ML. A molecular reassessment of the Leptomyxid amoebae Protist. 151: 275-282. PMID 11079772 DOI: 10.1078/1434-4610-00025  0.448
1999 Silberman JD, Clark CG, Diamond LS, Sogin ML. Phylogeny of the genera Entamoeba and Endolimax as deduced from small- subunit ribosomal RNA sequences Molecular Biology and Evolution. 16: 1740-1751. PMID 10605115 DOI: 10.1093/Oxfordjournals.Molbev.A026086  0.56
1999 Knodler LA, Svärd SG, Silberman JD, Davids BJ, Gillin FD. Developmental gene regulation in Giardia lamblia: First evidence for an encystation-specific promoter and differential 5' mRNA processing Molecular Microbiology. 34: 327-340. PMID 10564476 DOI: 10.1046/J.1365-2958.1999.01602.X  0.332
1999 Knodler LA, Noiva R, Mehta K, McCaffery JM, Aley SB, Svärd SG, Nystul TG, Reiner DS, Silberman JD, Gillin FD. Novel protein-disulfide isomerases from the early-diverging protist Giardia lamblia Journal of Biological Chemistry. 274: 29805-29811. PMID 10514458 DOI: 10.1074/Jbc.274.42.29805  0.302
1999 Zaman V, Zaki M, Howe J, Ng M, Leipe DD, Sogin ML, Silberman JD. Hyperamoeba isolated from human feces: Description and phylogenetic affinity European Journal of Protistology. 35: 197-207. DOI: 10.1016/S0932-4739(99)80038-8  0.545
1998 Sogin ML, Silberman JD. Evolution of the protists and protistan parasites from the perspective of molecular systematics International Journal For Parasitology. 28: 11-20. PMID 9504331 DOI: 10.1016/S0020-7519(97)00181-1  0.552
1998 Sarver SK, Silberman JD, Walsh PJ. Mitochondrial DNA sequence evidence supporting the recognition of two subspecies or species of the Florida spiny lobster Panulirus argus Journal of Crustacean Biology. 18: 177-186.  0.392
1996 Sogin ML, Morrison HG, Hinkle G, Silberman JD. Ancestral relationships of the major eukaryotic lineages Microbiología (Madrid, Spain). 12: 17-28. PMID 9019131  0.406
1994 Silberman JD, Sarver SK, Walsh PJ. Mitochondrial DNA variation and population structure in the spiny lobster Panulirus argus Marine Biology. 120: 601-608. DOI: 10.1007/BF00350081  0.305
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