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Ross P. Carlson, Ph.D. - Publications

Affiliations: 
2003 University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Chemical Engineering, Microbiology Biology, Biochemistry
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41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Tafur Rangel AE, Ríos W, Mejía D, Ojeda C, Carlson R, Gómez Ramírez JM, González Barrios AF. Design for Systems-Based Metabolic Engineering for the Bioconversion of Valuable Compounds From Industrial By-Products. Frontiers in Genetics. 12: 633073. PMID 33868371 DOI: 10.3389/fgene.2021.633073  0.302
2019 Park H, McGill SL, Arnold AD, Carlson RP. Pseudomonad reverse carbon catabolite repression, interspecies metabolite exchange, and consortial division of labor. Cellular and Molecular Life Sciences : Cmls. PMID 31768608 DOI: 10.1007/S00018-019-03377-X  0.371
2019 Patel A, Carlson RP, Henson MA. In silico Metabolic Design of Two-strain Biofilm Systems Predicts Enhanced Biomass Production and Biochemical Synthesis. Biotechnology Journal. e1800511. PMID 30927492 DOI: 10.1002/Biot.201800511  0.393
2019 Schepens D, Carlson RP, Heys J, Beck AE, Gedeon T. Role of resource allocation and transport in emergence of cross-feeding in microbial consortia. Journal of Theoretical Biology. PMID 30707974 DOI: 10.1016/J.Jtbi.2019.01.030  0.318
2018 Hunt KA, Jennings RM, Inskeep WP, Carlson RP. Multiscale analysis of autotroph-heterotroph interactions in a high-temperature microbial community. Plos Computational Biology. 14: e1006431. PMID 30260956 DOI: 10.1371/Journal.Pcbi.1006431  0.328
2018 Carlson RP, Beck AE, Phalak P, Fields MW, Gedeon T, Hanley L, Harcombe WR, Henson MA, Heys JJ. Competitive resource allocation to metabolic pathways contributes to overflow metabolisms and emergent properties in cross-feeding microbial consortia. Biochemical Society Transactions. PMID 29472366 DOI: 10.1042/Bst20170242  0.317
2017 Salinas D, Minor CA, Carlson RP, McCutchen CN, Mumey BM, June RK. Combining Targeted Metabolomic Data with a Model of Glucose Metabolism: Toward Progress in Chondrocyte Mechanotransduction. Plos One. 12: e0168326. PMID 28056047 DOI: 10.1371/Journal.Pone.0168326  0.355
2017 Venters M, Carlson RP, Gedeon T, Heys JJ. Effects of Spatial Localization on Microbial Consortia Growth. Plos One. 12: e0168592. PMID 28045924 DOI: 10.1371/Journal.Pone.0168592  0.355
2017 Schoen HR, Hunt KA, Strobel GA, Peyton BM, Carlson RP. Carbon chain length of biofuel- and flavor-relevant volatile organic compounds produced by lignocellulolytic fungal endophytes changes with culture temperature Mycoscience. 58: 338-343. DOI: 10.1016/J.Myc.2017.03.005  0.342
2016 Hunt KA, deM Jennings R, Inskeep WP, Carlson RP. Stoichiometric modeling of assimilatory and dissimilatory biomass utilization in a microbial community. Environmental Microbiology. PMID 27387069 DOI: 10.1111/1462-2920.13444  0.38
2016 Carlson RP, Oshota O, Shipman M, Caserta JA, Hu P, Saunders CW, Xu J, Jay ZJ, Reeder N, Richards A, Pettigrew C, Peyton BM. Integrated molecular, physiological and in silico characterization of two Halomonas isolates from industrial brine. Extremophiles : Life Under Extreme Conditions. PMID 26888357 DOI: 10.1007/S00792-015-0806-6  0.398
2016 Phalak P, Chen J, Carlson RP, Henson MA. Spatiotemporal Metabolic Modeling of a Chronic Wound Biofilm Consortium Ifac-Papersonline. 49: 32-37. DOI: 10.1016/J.Ifacol.2016.12.099  0.326
2015 Folsom JP, Carlson RP. Physiological, biomass elemental composition and proteomic analyses of Escherichia coli ammonium-limited chemostat growth, and comparison with iron- and glucose-limited chemostat growth. Microbiology (Reading, England). 161: 1659-70. PMID 26018546 DOI: 10.1099/Mic.0.000118  0.411
2014 Bernstein HC, Carlson RP. Design, construction, and characterization methodologies for synthetic microbial consortia. Methods in Molecular Biology (Clifton, N.J.). 1151: 49-68. PMID 24838878 DOI: 10.1007/978-1-4939-0554-6_4  0.359
2014 Folsom JP, Parker AE, Carlson RP. Physiological and proteomic analysis of Escherichia coli iron-limited chemostat growth. Journal of Bacteriology. 196: 2748-61. PMID 24837288 DOI: 10.1128/Jb.01606-14  0.338
2014 Bernstein HC, Kesaano M, Moll K, Smith T, Gerlach R, Carlson RP, Miller CD, Peyton BM, Cooksey KE, Gardner RD, Sims RC. Direct measurement and characterization of active photosynthesis zones inside wastewater remediating and biofuel producing microalgal biofilms. Bioresource Technology. 156: 206-15. PMID 24508901 DOI: 10.1016/J.Biortech.2014.01.001  0.356
2014 Hunt KA, Folsom JP, Taffs RL, Carlson RP. Complete enumeration of elementary flux modes through scalable demand-based subnetwork definition. Bioinformatics (Oxford, England). 30: 1569-78. PMID 24497502 DOI: 10.1093/Bioinformatics/Btu021  0.376
2013 Bhardwaj C, Cui Y, Hofstetter T, Liu SY, Bernstein HC, Carlson RP, Ahmed M, Hanley L. Differentiation of microbial species and strains in coculture biofilms by multivariate analysis of laser desorption postionization mass spectra. The Analyst. 138: 6844-51. PMID 24067765 DOI: 10.1039/C3An01389H  0.324
2013 Valenzuela J, Carlson RP, Gerlach R, Cooksey K, Peyton BM, Bothner B, Fields MW. Nutrient resupplementation arrests bio-oil accumulation in Phaeodactylum tricornutum. Applied Microbiology and Biotechnology. 97: 7049-59. PMID 23771779 DOI: 10.1007/S00253-013-5010-Y  0.323
2013 Mus F, Toussaint JP, Cooksey KE, Fields MW, Gerlach R, Peyton BM, Carlson RP. Physiological and molecular analysis of carbon source supplementation and pH stress-induced lipid accumulation in the marine diatom Phaeodactylum tricornutum. Applied Microbiology and Biotechnology. 97: 3625-42. PMID 23463245 DOI: 10.1007/S00253-013-4747-7  0.373
2012 Carlson RP, Oshota OJ, Taffs RL. Systems analysis of microbial adaptations to simultaneous stresses. Sub-Cellular Biochemistry. 64: 139-57. PMID 23080249 DOI: 10.1007/978-94-007-5055-5_7  0.393
2012 M T MB, Aydin B, Carlson RP, Hanley L. Identification and imaging of peptides and proteins on Enterococcus faecalis biofilms by matrix assisted laser desorption ionization mass spectrometry. The Analyst. 137: 5018-25. PMID 22962657 DOI: 10.1039/C2An35922G  0.317
2012 Valenzuela J, Mazurie A, Carlson RP, Gerlach R, Cooksey KE, Peyton BM, Fields MW. Potential role of multiple carbon fixation pathways during lipid accumulation in Phaeodactylum tricornutum. Biotechnology For Biofuels. 5: 40. PMID 22672912 DOI: 10.1186/1754-6834-5-40  0.337
2012 Bernstein HC, Paulson SD, Carlson RP. Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity. Journal of Biotechnology. 157: 159-66. PMID 22015987 DOI: 10.1016/J.Jbiotec.2011.10.001  0.417
2012 Gardner RD, Cooksey KE, Mus F, Macur R, Moll K, Eustance E, Carlson RP, Gerlach R, Fields MW, Peyton BM. Use of sodium bicarbonate to stimulate triacylglycerol accumulation in the chlorophyte Scenedesmus sp. and the diatom Phaeodactylum tricornutum Journal of Applied Phycology. 24: 1311-1320. DOI: 10.1007/S10811-011-9782-0  0.353
2009 Taffs R, Aston JE, Brileya K, Jay Z, Klatt CG, McGlynn S, Mallette N, Montross S, Gerlach R, Inskeep WP, Ward DM, Carlson RP. In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study. Bmc Systems Biology. 3: 114. PMID 20003240 DOI: 10.1186/1752-0509-3-114  0.322
2009 Arce FT, Carlson R, Monds J, Veeh R, Hu FZ, Stewart PS, Lal R, Ehrlich GD, Avci R. Nanoscale structural and mechanical properties of nontypeable Haemophilus influenzae biofilms. Journal of Bacteriology. 191: 2512-20. PMID 19218382 DOI: 10.1128/Jb.01596-08  0.312
2009 Carlson RP. Decomposition of complex microbial behaviors into resource-based stress responses. Bioinformatics (Oxford, England). 25: 90-7. PMID 19008248 DOI: 10.1093/Bioinformatics/Btn589  0.313
2007 Carlson RP. Metabolic systems cost-benefit analysis for interpreting network structure and regulation. Bioinformatics (Oxford, England). 23: 1258-64. PMID 17344237 DOI: 10.1093/Bioinformatics/Btm082  0.336
2006 Trinh CT, Carlson R, Wlaschin A, Srienc F. Design, construction and performance of the most efficient biomass producing E. coli bacterium. Metabolic Engineering. 8: 628-38. PMID 16997589 DOI: 10.1016/J.Ymben.2006.07.006  0.751
2006 Wlaschin AP, Trinh CT, Carlson R, Srienc F. The fractional contributions of elementary modes to the metabolism of Escherichia coli and their estimation from reaction entropies. Metabolic Engineering. 8: 338-52. PMID 16581276 DOI: 10.1016/J.Ymben.2006.01.007  0.73
2006 Carlson R, Srienc F. Effects of recombinant precursor pathway variations on poly[(R)-3-hydroxybutyrate] synthesis in Saccharomyces cerevisiae. Journal of Biotechnology. 124: 561-73. PMID 16530287 DOI: 10.1016/J.Jbiotec.2006.01.035  0.643
2006 Zhang B, Carlson R, Srienc F. Engineering the monomer composition of polyhydroxyalkanoates synthesized in Saccharomyces cerevisiae. Applied and Environmental Microbiology. 72: 536-43. PMID 16391089 DOI: 10.1128/Aem.72.1.536-543.2006  0.613
2006 Kacmar J, Carlson R, Balogh SJ, Srienc F. Staining and quantification of poly-3-hydroxybutyrate in Saccharomyces cerevisiae and Cupriavidus necator cell populations using automated flow cytometry. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 69: 27-35. PMID 16342115 DOI: 10.1002/Cyto.A.20197  0.719
2005 Vijayasankaran N, Carlson R, Srienc F. Synthesis of poly[(R)-3-hydroxybutyric acid) in the cytoplasm of Pichia pastoris under oxygen limitation. Biomacromolecules. 6: 604-11. PMID 15762620 DOI: 10.1021/Bm0494141  0.765
2005 Vijayasankaran N, Carlson R, Srienc F. Metabolic pathway structures for recombinant protein synthesis in Escherichia coli. Applied Microbiology and Biotechnology. 68: 737-46. PMID 15739064 DOI: 10.1007/S00253-005-1920-7  0.759
2005 Carlson R, Wlaschin A, Srienc F. Kinetic studies and biochemical pathway analysis of anaerobic poly-(R)-3-hydroxybutyric acid synthesis in Escherichia coli. Applied and Environmental Microbiology. 71: 713-20. PMID 15691921 DOI: 10.1128/Aem.71.2.713-720.2005  0.754
2004 Kacmar J, Zamamiri A, Carlson R, Abu-Absi NR, Srienc F. Single-cell variability in growing Saccharomyces cerevisiae cell populations measured with automated flow cytometry. Journal of Biotechnology. 109: 239-54. PMID 15066762 DOI: 10.1016/J.Jbiotec.2004.01.003  0.679
2004 Carlson R, Srienc F. Fundamental Escherichia coli biochemical pathways for biomass and energy production: creation of overall flux states. Biotechnology and Bioengineering. 86: 149-62. PMID 15052634 DOI: 10.1002/Bit.20044  0.648
2004 Carlson R, Srienc F. Fundamental Escherichia coli biochemical pathways for biomass and energy production: identification of reactions. Biotechnology and Bioengineering. 85: 1-19. PMID 14705007 DOI: 10.1002/Bit.10812  0.664
2002 Carlson R, Fell D, Srienc F. Metabolic pathway analysis of a recombinant yeast for rational strain development. Biotechnology and Bioengineering. 79: 121-34. PMID 12115428 DOI: 10.1002/Bit.10305  0.645
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