Douglas W. Bryant - Publications

Affiliations: 
Electrical Engineering and Computer Science Oregon State University, Corvallis, OR 

19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Michael TP, Ernst E, Hartwick N, Chu P, Bryant D, Gilbert S, Ortleb S, Baggs EL, Sree KS, Appenroth KJ, Fuchs J, Jupe F, Sandoval JP, Krasileva KV, Borisjuk L, et al. Genome and time-of-day transcriptome of link morphological minimization with gene loss and less growth control. Genome Research. PMID 33361111 DOI: 10.1101/gr.266429.120  0.345
2020 VanBuren R, Man Wai C, Wang X, Pardo J, Yocca AE, Wang H, Chaluvadi SR, Han G, Bryant D, Edger PP, Messing J, Sorrells ME, Mockler TC, Bennetzen JL, Michael TP. Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff. Nature Communications. 11: 884. PMID 32060277 DOI: 10.1038/S41467-020-14724-Z  0.397
2019 Carter KA, Liston A, Bassil NV, Alice LA, Bushakra JM, Sutherland BL, Mockler TC, Bryant DW, Hummer KE. Target Capture Sequencing Unravels Evolution. Frontiers in Plant Science. 10: 1615. PMID 31921259 DOI: 10.3389/Fpls.2019.01615  0.308
2016 Michael TP, Bryant D, Gutierrez R, Borisjuk N, Chu P, Zhang H, Xia J, Zhou J, Peng H, El Baidouri M, Ten Hallers B, Hastie AR, Liang T, Acosta K, Gilbert S, et al. Comprehensive Definition of Genome Features in Spirodela polyrhiza by High-Depth Physical Mapping and Short-Read DNA Sequencing Strategies. The Plant Journal : For Cell and Molecular Biology. PMID 27754575 DOI: 10.1111/Tpj.13400  0.501
2015 Fahlgren N, Feldman M, Gehan MA, Wilson MS, Shyu C, Bryant DW, Hill ST, McEntee CJ, Warnasooriya SN, Kumar I, Ficor T, Turnipseed S, Gilbert KB, Brutnell TP, Carrington JC, et al. A versatile phenotyping system and analytics platform reveals diverse temporal responses to water availability in Setaria. Molecular Plant. PMID 26099924 DOI: 10.1016/J.Molp.2015.06.005  0.303
2015 Bushakra JM, Bryant DW, Dossett M, Vining KJ, VanBuren R, Gilmore BS, Lee J, Mockler TC, Finn CE, Bassil NV. A genetic linkage map of black raspberry (Rubus occidentalis) and the mapping of Ag 4 conferring resistance to the aphid Amphorophora agathonica. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 128: 1631-46. PMID 26037086 DOI: 10.1007/S00122-015-2541-X  0.332
2014 Wang L, Czedik-Eysenberg A, Mertz RA, Si Y, Tohge T, Nunes-Nesi A, Arrivault S, Dedow LK, Bryant DW, Zhou W, Xu J, Weissmann S, Studer A, Li P, Zhang C, et al. Comparative analyses of C₄ and C₃ photosynthesis in developing leaves of maize and rice. Nature Biotechnology. 32: 1158-65. PMID 25306245 DOI: 10.1038/Nbt.3019  0.314
2013 Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, Fernández-Cortés A, Arteaga-Vázquez M, Góngora-Castillo E, Acevedo-Hernández G, Schuster SC, ... ... Bryant D, et al. Architecture and evolution of a minute plant genome. Nature. 498: 94-8. PMID 23665961 DOI: 10.1038/Nature12132  0.455
2012 Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. Plos One. 7: e48305. PMID 23284615 DOI: 10.1371/Journal.Pone.0048305  0.43
2012 Bryant DW, Priest HD, Mockler TC. Detection and quantification of alternative splicing variants using RNA-seq. Methods in Molecular Biology (Clifton, N.J.). 883: 97-110. PMID 22589127 DOI: 10.1007/978-1-61779-839-9_7  0.348
2012 Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, Gasic K, Micheletti D, Rosyara UR, Cattonaro F, Vendramin E, Main D, Aramini V, Blas AL, Mockler TC, Bryant DW, et al. Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm. Plos One. 7: e35668. PMID 22536421 DOI: 10.1371/Journal.Pone.0035668  0.401
2012 Wang Y, Zeng X, Iyer NJ, Bryant DW, Mockler TC, Mahalingam R. Exploring the switchgrass transcriptome using second-generation sequencing technology. Plos One. 7: e34225. PMID 22479570 DOI: 10.1371/Journal.Pone.0034225  0.495
2012 Rowley ER, Fox SE, Bryant DW, Sullivan CM, Priest HD, Givan SA, Mehlenbacher SA, Mockler TC. Assembly and characterization of the European hazelnut 'Jefferson' transcriptome Crop Science. 52: 2679-2686. DOI: 10.2135/Cropsci2012.02.0065  0.452
2012 Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Cherry accessions used for low-coverage re-sequencing and subsequent SNP detection. Plos One. DOI: 10.1371/Journal.Pone.0048305.T001  0.376
2011 Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, ... ... Bryant DW, et al. The genome of woodland strawberry (Fragaria vesca). Nature Genetics. 43: 109-16. PMID 21186353 DOI: 10.1038/Ng.740  0.49
2010 Bryant DW, Shen R, Priest HD, Wong WK, Mockler TC. Supersplat--spliced RNA-seq alignment. Bioinformatics (Oxford, England). 26: 1500-5. PMID 20410051 DOI: 10.1093/Bioinformatics/Btq206  0.414
2010 Vogel JP, Garvin DF, Mockler TC, Schmutz J, Rokhsar D, Bevan MW, Barry K, Lucas S, Harmon-Smith M, Lail K, Tice H, Grimwood J, McKenzie N, Huo N, Gu YQ, ... ... Bryant DW, et al. Genome sequencing and analysis of the model grass Brachypodium distachyon Nature. 463: 763-768. PMID 20148030 DOI: 10.1038/Nature08747  0.474
2010 Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, Wong WK, Mockler TC. Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Research. 20: 45-58. PMID 19858364 DOI: 10.1101/Gr.093302.109  0.419
2009 Bryant DW, Wong WK, Mockler TC. QSRA: a quality-value guided de novo short read assembler. Bmc Bioinformatics. 10: 69. PMID 19239711 DOI: 10.1186/1471-2105-10-69  0.335
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