☰

Benjamin M. Good - Publications

Affiliations: 
2010-2013 Scripps Research Institute, La Jolla, La Jolla, CA, United States 
Tree Info Similar researchers PubMed Report error

44/67 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Reese JT, Unni D, Callahan TJ, Cappelletti L, Ravanmehr V, Carbon S, Shefchek KA, Good BM, Balhoff JP, Fontana T, Blau H, Matentzoglu N, Harris NL, Munoz-Torres MC, Haendel MA, et al. KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response. Patterns (New York, N.Y.). 100155. PMID 33196056 DOI: 10.1016/j.patter.2020.100155  0.347
2020 Queralt-Rosinach N, Stupp GS, Li TS, Mayers M, Hoatlin ME, Might M, Good BM, Su AI. Structured reviews for data and knowledge-driven research. Database : the Journal of Biological Databases and Curation. 2020. PMID 32283553 DOI: 10.1093/Database/Baaa015  0.796
2020 Waagmeester A, Stupp G, Burgstaller-Muehlbacher S, Good BM, Griffith M, Griffith OL, Hanspers K, Hermjakob H, Hudson TS, Hybiske K, Keating SM, Manske M, Mayers M, Mietchen D, Mitraka E, et al. Wikidata as a knowledge graph for the life sciences. Elife. 9. PMID 32180547 DOI: 10.7554/Elife.52614  0.733
2020 Waagmeester A, Stupp G, Burgstaller-Muehlbacher S, Good BM, Griffith M, Griffith OL, Hanspers K, Hermjakob H, Hudson TS, Hybiske K, Keating SM, Manske M, Mayers M, Mietchen D, Mitraka E, et al. Author response: Wikidata as a knowledge graph for the life sciences Elife. DOI: 10.7554/Elife.52614.Sa2  0.699
2019 Thomas PD, Hill DP, Mi H, Osumi-Sutherland D, Van Auken K, Carbon S, Balhoff JP, Albou LP, Good B, Gaudet P, Lewis SE, Mungall CJ. Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems. Nature Genetics. PMID 31548717 DOI: 10.1038/S41588-019-0500-1  0.422
2019 Tsueng G, Nanis M, Fouquier JT, Mayers M, Good BM, Su AI. Applying Citizen Science to Gene, Drug, and Disease Relationship Extraction from Biomedical Abstracts. Bioinformatics (Oxford, England). PMID 31504205 DOI: 10.1093/Bioinformatics/Btz678  0.787
2019 Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Stupp GS, Waagmeester A, Good BM, Wu C, Su AI. ChlamBase: a curated model organism database for the Chlamydia research community. Database : the Journal of Biological Databases and Curation. 2019. PMID 31211397 DOI: 10.1093/database/baz091  0.757
2018 Balhoff JP, Good BM, Carbon S, Mungall CJ. Arachne: an OWL RL reasoner applied to gene ontology causal activity models (and beyond) F1000research. 7. DOI: 10.7490/F1000Research.1116194.1  0.316
2017 Putman TE, Lelong S, Burgstaller-Muehlbacher S, Waagmeester A, Diesh C, Dunn N, Munoz-Torres M, Stupp GS, Wu C, Su AI, Good BM. WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. Database : the Journal of Biological Databases and Curation. 2017. PMID 28365742 DOI: 10.1093/database/bax025  0.777
2017 Griffith M, Spies NC, Krysiak K, McMichael JF, Coffman AC, Danos AM, Ainscough BJ, Ramirez CA, Rieke DT, Kujan L, Barnell EK, Wagner AH, Skidmore ZL, Wollam A, Liu CJ, ... ... Good BM, et al. CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. Nature Genetics. 49: 170-174. PMID 28138153 DOI: 10.1038/Ng.3774  0.656
2017 Mitraka E, Waagmeester A, Queralt-Rosinach N, Burgstaller-Muehlbacher S, Stupp G, Schriml L, McMichael JF, Ainscough B, Griffith M, Griffith OL, Su AI, Good BM. 10 steps to integrate CIViCdb with other public data in Wikidata F1000research. 6. DOI: 10.7490/F1000Research.1113836.1  0.748
2017 Stupp GS, Queralt-Rosinach N, Putman T, Burgstaller-Muehlbacher S, Waagmeester A, Su AI, Good BM. Best practices for data provenance in Wikidata F1000research. 6. DOI: 10.7490/F1000Research.1113800.1  0.738
2016 Tsueng G, Nanis SM, Fouquier J, Good BM, Su AI. Citizen Science for Mining the Biomedical Literature. Citizen Science : Theory and Practice. 1. PMID 30416754 DOI: 10.5334/cstp.56  0.567
2016 Bravo À, Li TS, Su AI, Good BM, Furlong LI. Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text. Database : the Journal of Biological Databases and Curation. 2016. PMID 27307137 DOI: 10.1093/Database/Baw094  0.647
2016 Gangavarapu K, Babji V, Meißner T, Su AI, Good BM. Branch: an interactive, web-based tool for testing hypotheses and developing predictive models. Bioinformatics (Oxford, England). 32: 2072-2074. PMID 27153723 DOI: 10.1093/Bioinformatics/Btw117  0.677
2016 Tsueng G, Good BM, Ping P, Golemis E, Hanukoglu I, van Wijnen AJ, Su AI. Gene Wiki Reviews-Raising the quality and accessibility of information about the human genome. Gene. 592: 235-8. PMID 27150585 DOI: 10.1016/J.Gene.2016.04.053  0.613
2016 Li TS, Bravo À, Furlong LI, Good BM, Su AI. A crowdsourcing workflow for extracting chemical-induced disease relations from free text. Database : the Journal of Biological Databases and Curation. 2016. PMID 27087308 DOI: 10.1093/Database/Baw051  0.611
2016 Putman TE, Burgstaller-Muehlbacher S, Waagmeester A, Wu C, Su AI, Good BM. Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes. Database : the Journal of Biological Databases and Curation. 2016. PMID 27022157 DOI: 10.1093/Database/Baw028  0.804
2016 Burgstaller-Muehlbacher S, Waagmeester A, Mitraka E, Turner J, Putman T, Leong J, Naik C, Pavlidis P, Schriml L, Good BM, Su AI. Wikidata as a semantic framework for the Gene Wiki initiative. Database : the Journal of Biological Databases and Curation. 2016. PMID 26989148 DOI: 10.1093/Database/Baw015  0.797
2016 Hettne KM, Thompson M, van Haagen HH, van der Horst E, Kaliyaperumal R, Mina E, Tatum Z, Laros JF, van Mulligen EM, Schuemie M, Aten E, Li TS, Bruskiewich R, Good BM, Su AI, et al. The Implicitome: A Resource for Rationalizing Gene-Disease Associations. Plos One. 11: e0149621. PMID 26919047 DOI: 10.1371/Journal.Pone.0149621  0.661
2016 Khare R, Good BM, Leaman R, Su AI, Lu Z. Crowdsourcing in biomedicine: challenges and opportunities. Briefings in Bioinformatics. 17: 23-32. PMID 25888696 DOI: 10.1093/Bib/Bbv021  0.612
2015 Good BM, Nanis M, Wu C, Su AI. Microtask crowdsourcing for disease mention annotation in PubMed abstracts. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 282-93. PMID 25592589  0.662
2015 Leaman R, Good BM, Su AI, Lu Z. Crowdsourcing and mining crowd data. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 267-9. PMID 25592587  0.507
2015 Mitraka E, Waagmeester A, Burgstaller-Muehlbacher S, Schriml LM, Su AI, Good BM. Wikidata: A platform for data integration and dissemination for the life sciences and beyond Ceur Workshop Proceedings. 1546: 69-73.  0.795
2014 Good BM, Loguercio S, Griffith OL, Nanis M, Wu C, Su AI. The cure: design and evaluation of a crowdsourcing game for gene selection for breast cancer survival prediction. Jmir Serious Games. 2: e7. PMID 25654473 DOI: 10.2196/games.3350  0.779
2014 Good BM, Ainscough BJ, McMichael JF, Su AI, Griffith OL. Organizing knowledge to enable personalization of medicine in cancer. Genome Biology. 15: 438. PMID 25222080 DOI: 10.1186/S13059-014-0438-7  0.58
2013 Masum H, Rao A, Good BM, Todd MH, Edwards AM, Chan L, Bunin BA, Su AI, Thomas Z, Bourne PE. Ten simple rules for cultivating open science and collaborative R&D. Plos Computational Biology. 9: e1003244. PMID 24086123 DOI: 10.1371/Journal.Pcbi.1003244  0.597
2013 Su AI, Good BM, van Wijnen AJ. Gene Wiki Reviews: marrying crowdsourcing with traditional peer review. Gene. 531: 125. PMID 24012870 DOI: 10.1016/J.Gene.2013.08.093  0.533
2013 Loguercio S, Good BM, Su AI. Dizeez: an online game for human gene-disease annotation. Plos One. 8: e71171. PMID 23951102 DOI: 10.1371/Journal.Pone.0071171  0.803
2013 Good BM, Su AI. Crowdsourcing for bioinformatics. Bioinformatics (Oxford, England). 29: 1925-33. PMID 23782614 DOI: 10.1093/Bioinformatics/Btt333  0.597
2013 Clarke EL, Loguercio S, Good BM, Su AI. A task-based approach for Gene Ontology evaluation. Journal of Biomedical Semantics. 4: S4. PMID 23734599 DOI: 10.1186/2041-1480-4-S1-S4  0.779
2013 Loguercio S, Good BM, Su AI. Correction: Dizeez: An Online Game for Human Gene-Disease Annotation Plos One. 8. DOI: 10.1371/Annotation/Efa93B55-C8F0-4943-B922-A585D68F0Bd0  0.765
2012 Good BM, Clarke EL, Loguercio S, Su AI. Linking genes to diseases with a SNPedia-Gene Wiki mashup. Journal of Biomedical Semantics. 3: S6. PMID 22541597 DOI: 10.1186/2041-1480-3-S1-S6  0.801
2012 Good BM, Clarke EL, Loguercio S, Su AI. Building a biomedical semantic network in Wikipedia with Semantic Wiki Links. Database : the Journal of Biological Databases and Curation. 2012: bar060. PMID 22434829 DOI: 10.1093/Database/Bar060  0.797
2012 Good BM, Clarke EL, de Alfaro L, Su AI. The Gene Wiki in 2011: community intelligence applied to human gene annotation. Nucleic Acids Research. 40: D1255-61. PMID 22075991 DOI: 10.1093/Nar/Gkr925  0.622
2012 Good BM, Loguercio S, Nanis M, Su AI. genegames.org: High-throughput access to biological knowledge and reasoning through online games Proceedings - 2012 Ieee 2nd Conference On Healthcare Informatics, Imaging and Systems Biology, Hisb 2012. 145. DOI: 10.1109/HISB.2012.70  0.766
2011 Good BM, Su AI. Games with a scientific purpose. Genome Biology. 12: 135. PMID 22204700 DOI: 10.1186/Gb-2011-12-12-135  0.528
2011 Good BM, Howe DG, Lin SM, Kibbe WA, Su AI. Mining the Gene Wiki for functional genomic knowledge. Bmc Genomics. 12: 603. PMID 22165947 DOI: 10.1186/1471-2164-12-603  0.638
2009 Good BM, Tennis JT, Wilkinson MD. Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics. Bmc Bioinformatics. 10: 313. PMID 19781082 DOI: 10.1186/1471-2105-10-313  0.315
2008 Bruskiewich R, Senger M, Davenport G, Ruiz M, Rouard M, Hazekamp T, Takeya M, Doi K, Satoh K, Costa M, Simon R, Balaji J, Akintunde A, Mauleon R, Wanchana S, ... ... Good B, et al. The generation challenge programme platform: semantic standards and workbench for crop science. International Journal of Plant Genomics. 2008: 369601. PMID 18483570 DOI: 10.1155/2008/369601  0.412
2008 Wilkinson MD, Senger M, Kawas E, Bruskiewich R, Gouzy J, Noirot C, Bardou P, Ng A, Haase D, Saiz Ede A, Wang D, Gibbons F, Gordon PM, Sensen CW, ... ... Good B, et al. Interoperability with Moby 1.0--it's better than sharing your toothbrush! Briefings in Bioinformatics. 9: 220-31. PMID 18238804 DOI: 10.1093/Bib/Bbn003  0.351
2007 Good BM, Kawas EA, Wilkinson MD. Bridging the gap between social tagging and semantic annotation: E.D. the Entity Describer Nature Precedings. 2: 1-1. DOI: 10.1038/Npre.2007.945.1  0.418
2006 Good BM, Wilkinson MD. The Life Sciences Semantic Web is full of creeps! Briefings in Bioinformatics. 7: 275-86. PMID 16899496 DOI: 10.1093/Bib/Bbl025  0.385
2003 Pillai S, Good B, Richman D, Corbeil J. A new perspective on V3 phenotype prediction. Aids Research and Human Retroviruses. 19: 145-9. PMID 12643277 DOI: 10.1089/088922203762688658  0.309
Low-probability matches (unlikely to be authored by this person)
2005 Naviaux R, Good B, McPherson J, Steffen D, Markusic D, Ransom B, Corbeil J. Sand DNA—a genetic library of life at the water's edge Marine Ecology Progress Series. 301: 9-22. DOI: 10.3354/Meps301009  0.295
2006 Johannesson H, Kasuga T, Schaller RA, Good B, Gardner MJ, Townsend JP, Cole GT, Taylor JW. Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii. Fungal Genetics and Biology : Fg & B. 43: 545-59. PMID 16697669 DOI: 10.1016/J.Fgb.2006.02.003  0.295
2006 Good BM, Kawas EA, Kuo BY, Wilkinson MD. iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website. Bmc Bioinformatics. 7: 534. PMID 17173692 DOI: 10.1186/1471-2105-7-534  0.294
2021 Hannestad LM, Dančík V, Godden M, Suen IW, Huellas-Bruskiewicz KC, Good BM, Mungall CJ, Bruskiewich RM. Knowledge Beacons: Web services for data harvesting of distributed biomedical knowledge. Plos One. 16: e0231916. PMID 33755673 DOI: 10.1371/journal.pone.0231916  0.279
2008 Belleau F, Tourigny N, Good B, Morissette J. Bio2RDF : AAA semantic web atlas of post genomic knowledge about human and mouse Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5109: 153-160. DOI: 10.1007/978-3-540-69828-9_15  0.263
2003 Pillai S, Good B, Richman D, Corbeil J. Sequence Note: A New Perspective on V3 Phenotype Prediction Aids Research and Human Retroviruses. 19: 347-347. DOI: 10.1089/088922203764969564  0.255
2015 Good BM, Nanis M, Wu C, Su AI. Microtask crowdsourcing for disease mention annotation in pubmed abstracts 20th Pacific Symposium On Biocomputing, Psb 2015. 282-293.  0.255
2007 Song YC, Kawas E, Good BM, Wilkinson MD, Tebbutt SJ. DataBiNS: A BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs Bioinformatics. 23: 780-782. PMID 17237074 DOI: 10.1093/bioinformatics/btl648  0.234
2006 Pillai SK, Pond SL, Liu Y, Good BM, Strain MC, Ellis RJ, Letendre S, Smith DM, Günthard HF, Grant I, Marcotte TD, McCutchan JA, Richman DD, Wong JK. Genetic attributes of cerebrospinal fluid-derived HIV-1 env. Brain : a Journal of Neurology. 129: 1872-83. PMID 16735456 DOI: 10.1093/Brain/Awl136  0.234
2005 Pillai SK, Good B, Pond SK, Wong JK, Strain MC, Richman DD, Smith DM. Semen-specific genetic characteristics of human immunodeficiency virus type 1 env. Journal of Virology. 79: 1734-42. PMID 15650198 DOI: 10.1128/Jvi.79.3.1734-1742.2005  0.223
2008 Davis DP, Peay J, Good B, Sise MJ, Kennedy F, Eastman AB, Velky T, Hoyt DB. Air Medical Response to Traumatic Brain Injury: A Computer Learning Algorithm Analysis Journal of Trauma-Injury Infection and Critical Care. 64: 889-897. PMID 18404053 DOI: 10.1097/Ta.0B013E318148569A  0.217
2004 Leigh Brown AJ, Frost SD, Good B, Daar ES, Simon V, Markowitz M, Collier AC, Connick E, Conway B, Margolick JB, Routy JP, Corbeil J, Hellmann NS, Richman DD, Little SJ. Genetic basis of hypersusceptibility to protease inhibitors and low replicative capacity of human immunodeficiency virus type 1 strains in primary infection. Journal of Virology. 78: 2242-6. PMID 14963120 DOI: 10.1128/Jvi.78.5.2242-2246.2004  0.217
2006 Good BM, Tranfield EM, Tan PC, Shehata M, Singhera GK, Gosselink J, Okon EB, Wilkinson MD. Fast, cheap and out of control: a zero curation model for ontology development. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 128-39. PMID 17094234  0.214
2007 Low AJ, Dong W, Chan D, Sing T, Swanstrom R, Jensen M, Pillai S, Good B, Harrigan PR. Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates. Aids (London, England). 21: F17-24. PMID 17721088 DOI: 10.1097/Qad.0B013E3282Ef81Ea  0.213
2005 Strain MC, Letendre S, Pillai SK, Russell T, Ignacio CC, Günthard HF, Good B, Smith DM, Wolinsky SM, Furtado M, Marquie-Beck J, Durelle J, Grant I, Richman DD, Marcotte T, et al. Genetic composition of human immunodeficiency virus type 1 in cerebrospinal fluid and blood without treatment and during failing antiretroviral therapy. Journal of Virology. 79: 1772-88. PMID 15650202 DOI: 10.1128/Jvi.79.3.1772-1788.2005  0.208
2021 Good BM, Van Auken K, Hill DP, Mi H, Carbon S, Balhoff JP, Albou LP, Thomas PD, Mungall CJ, Blake JA, D'Eustachio P. Reactome and the Gene Ontology: Digital convergence of data resources. Bioinformatics (Oxford, England). PMID 33964129 DOI: 10.1093/bioinformatics/btab325  0.195
2015 Leaman R, Good BM, Su AI, Lu Z. Crowdsourcing and mining crowd data 20th Pacific Symposium On Biocomputing, Psb 2015. 267-269.  0.172
2023 Shiver AL, Sun J, Culver R, Violette A, Wynter C, Nieckarz M, Mattiello SP, Sekhon PK, Friess L, Carlson HK, Wong D, Higginbottom S, Weglarz M, Wang W, Knapp BD, ... ... Good B, et al. A mutant fitness compendium in Bifidobacteria reveals molecular determinants of colonization and host-microbe interactions. Biorxiv : the Preprint Server For Biology. PMID 37693407 DOI: 10.1101/2023.08.29.555234  0.166
2007 Kuo BYL, Hentrich T, Good BM, Wilkinson MD. Tag clouds for summarizing web search results 16th International World Wide Web Conference, Www2007. 1203-1204. DOI: 10.1145/1242572.1242766  0.16
2007 Good BM, Wilkinson MD. Ontology engineering using volunteer labor 16th International World Wide Web Conference, Www2007. 1243-1244. DOI: 10.1145/1242572.1242787  0.145
2009 Good BM, Tennis JT. Term based comparison metrics for controlled and uncontrolled indexing languages Information Research. 14.  0.123
2008 Good BM, Tennis JT. Evidence of term-structure differences among folksonomies and controlled indexing languages Proceedings of the Asist Annual Meeting. 45.  0.076
2014 Good B, Walsh RM, Alexander G, Moore G. Assessment of the acute psychiatric patient in the emergency department: Legal cases and caveats Western Journal of Emergency Medicine. 15: 312-317. PMID 24868310 DOI: 10.5811/westjem.2013.8.18378  0.026
Hide low-probability matches.