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Silvina Matysiak, Ph.D. - Publications

Affiliations: 
2008 Rice University, Houston, TX 
Area:
Physical Chemistry, Condensed Matter Physics, General Biophysics
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41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lee PY, Sahoo A, Matysiak S. Folding and modulation of the helical conformation of Glycophorin A by point mutations. Physical Chemistry Chemical Physics : Pccp. 25: 10885-10893. PMID 37014104 DOI: 10.1039/d3cp00263b  0.311
2022 Sahoo A, Lee PY, Matysiak S. Transferable and Polarizable Coarse Grained Model for Proteins─ProMPT. Journal of Chemical Theory and Computation. PMID 35793442 DOI: 10.1021/acs.jctc.2c00269  0.326
2020 Singh O, Lee PY, Matysiak S, Bermudez H. Dual mechanism of ionic liquid-induced protein unfolding. Physical Chemistry Chemical Physics : Pccp. PMID 32844828 DOI: 10.1039/D0Cp03138K  0.366
2020 Wang J, Samanta R, Custer GS, Look C, Matysiak S, Beckett D. Tuning Allostery through integration of Disorder-to-order with a Residue Network. Biochemistry. PMID 31899864 DOI: 10.1021/Acs.Biochem.9B01006  0.741
2019 Sahoo A, Matysiak S. Computational insights into lipid assisted peptide misfolding and aggregation in neurodegeneration. Physical Chemistry Chemical Physics : Pccp. PMID 31595905 DOI: 10.1039/C9Cp02765C  0.311
2019 Sahoo A, Xu H, Matysiak S. Pathways of amyloid-beta absorption and aggregation in a membranous environment. Physical Chemistry Chemical Physics : Pccp. PMID 30964132 DOI: 10.1039/C9Cp00040B  0.319
2019 Samanta R, Wang J, Beckett D, Matysiak S. Integration of an Electrostatic Network and Disorder-to-Order Transitions in Protein Allostery Biophysical Journal. 116: 463a. DOI: 10.1016/J.Bpj.2018.11.2503  0.335
2018 Custer GS, Xu H, Matysiak S, Das P. How Hydrophobic Hydration Destabilizes Surfactant Micelle at Low Temperature: A Coarse-grained Simulation Study. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 30247911 DOI: 10.1021/Acs.Langmuir.8B01994  0.738
2018 Das P, Matysiak S, Mittal J. Looking at the Disordered Proteins through the Computational Microscope. Acs Central Science. 4: 534-542. PMID 29805999 DOI: 10.1021/Acscentsci.7B00626  0.696
2018 He C, Custer GS, Wang J, Matysiak S, Beckett D. Superrepression through Altered Corepressor-Activated Protein:protein Interactions. Biochemistry. PMID 29355305 DOI: 10.1021/Acs.Biochem.7B01122  0.741
2018 Beckett D, He C, Wang J, Custer G, Matysiak S. Protein:Protein Interactions Control Sensitivity of a Transcription Response to Input Signal Biophysical Journal. 114: 69a. DOI: 10.1016/J.Bpj.2017.11.426  0.737
2017 Wang J, Custer GS, Beckett D, Matysiak S. Long Distance Modulation of Disorder-to-Order in Protein Allostery. Biochemistry. PMID 28718281 DOI: 10.1021/Acs.Biochem.7B00496  0.752
2017 Xu H, Matysiak S. Effect of pH on chitosan hydrogel polymer network structure. Chemical Communications (Cambridge, England). PMID 28612070 DOI: 10.1039/C7Cc01826F  0.301
2017 Custer GS, Das P, Matysiak S. Interplay between Conformational Heterogeneity and Hydration in the Folding Landscape of a Designed 3-Helix Bundle. The Journal of Physical Chemistry. B. PMID 28282142 DOI: 10.1021/Acs.Jpcb.6B12286  0.746
2016 Chaibva M, Jawahery S, Pilkington AW, Arndt JR, Sarver O, Valentine S, Matysiak S, Legleiter J. Acetylation within the First 17 Residues of Huntingtin Exon 1 Alters Aggregation and Lipid Binding. Biophysical Journal. 111: 349-62. PMID 27463137 DOI: 10.1016/J.Bpj.2016.06.018  0.326
2016 Ganesan SJ, Xu H, Matysiak S. Effect of lipid head group interactions on membrane properties and membrane-induced cationic β-hairpin folding. Physical Chemistry Chemical Physics : Pccp. PMID 27165814 DOI: 10.1039/C5Cp07669B  0.332
2016 Ganesan S, Matysiak S. Membrane Induced Peptide Folding and Aggregation Biophysical Journal. 110: 76a. DOI: 10.1016/J.Bpj.2015.11.475  0.316
2016 Xu H, Ganesan S, Matysiak S. Lipid Domains in Zwitterionic-Anionic Lipid Mixtures Induced by Combined Effect of Monovalent and Divalent Ions Biophysical Journal. 110: 412a-413a. DOI: 10.1016/J.Bpj.2015.11.2230  0.331
2015 Ganesan SJ, Matysiak S. Interplay between the hydrophobic effect and dipole interactions in peptide aggregation at interfaces. Physical Chemistry Chemical Physics : Pccp. PMID 26698374 DOI: 10.1039/C5Cp05867H  0.424
2015 Ganesan S, Matysiak S. The Role of Backbone Dipole Interactions in the Formation of Secondary and Supersecondary Structures Biophysical Journal. 108: 157a. DOI: 10.1016/J.Bpj.2014.11.863  0.434
2015 Xu H, Ganesan S, Matysiak S. Role of Headgroup Dipole Interactions in Phosphatidylcholine and Phosphatidylserine Bilayers Biophysical Journal. 108: 410a. DOI: 10.1016/J.Bpj.2014.11.2247  0.353
2015 Ganesan SJ, Matysiak S. Role of Interfaces in Peptide Folding and Aggregation Biophysical Journal. 108: 15a-16a. DOI: 10.1016/J.Bpj.2014.11.111  0.45
2014 Ganesan SJ, Matysiak S. Role of Backbone Dipole Interactions in the Formation of Secondary and Supersecondary Structures of Proteins. Journal of Chemical Theory and Computation. 10: 2569-2576. PMID 24932137 DOI: 10.1021/Ct401087A  0.429
2014 Nagarajan A, Jawahery S, Matysiak S. The effects of flanking sequences in the interaction of polyglutamine peptides with a membrane bilayer. The Journal of Physical Chemistry. B. 118: 6368-79. PMID 24354677 DOI: 10.1021/Jp407900C  0.34
2014 Ganesan SJ, Schneider J, Blumenthal R, Matysiak S. Role of Environment in Protein Folding Biophysical Journal. 106: 669a. DOI: 10.1016/J.Bpj.2013.11.3709  0.427
2013 Nagarajan A, Junghans C, Matysiak S. Multiscale Simulation of Liquid Water Using a Four-to-One Mapping for Coarse-Graining. Journal of Chemical Theory and Computation. 9: 5168-75. PMID 26583426 DOI: 10.1021/Ct400566J  0.377
2013 Matysiak S, Das P. Effects of sequence and solvation on the temperature-pressure conformational landscape of proteinlike heteropolymers. Physical Review Letters. 111: 058103. PMID 23952449 DOI: 10.1103/Physrevlett.111.058103  0.674
2013 Nagarajan A, Jawahery S, Matysiak S. Length and Sequence Dependence in the Association of Htt Protein with Lipid Bilayers Biophysical Journal. 104: 431a. DOI: 10.1016/J.Bpj.2012.11.2400  0.394
2012 Yang LW, Matysiak S, Hsu ST, Mustata Wilson G, Joti Y. Functional dynamics of proteins. Computational and Mathematical Methods in Medicine. 2012: 242903. PMID 23346219 DOI: 10.1155/2012/242903  0.398
2012 Romero-Vargas Castrillón S, Matysiak S, Stillinger FH, Rossky PJ, Debenedetti PG. Thermal stability of hydrophobic helical oligomers: a lattice simulation study in explicit water. The Journal of Physical Chemistry. B. 116: 9963-70. PMID 22877080 DOI: 10.1021/Jp305134W  0.403
2012 Romero-Vargas Castrillón S, Matysiak S, Stillinger FH, Rossky PJ, Debenedetti PG. Phase behavior of a lattice hydrophobic oligomer in explicit water. The Journal of Physical Chemistry. B. 116: 9540-8. PMID 22823886 DOI: 10.1021/Jp3039237  0.411
2012 Matysiak S, Debenedetti PG, Rossky PJ. Role of hydrophobic hydration in protein stability: a 3D water-explicit protein model exhibiting cold and heat denaturation. The Journal of Physical Chemistry. B. 116: 8095-104. PMID 22725973 DOI: 10.1021/Jp3039175  0.461
2012 Das P, Matysiak S. Direct characterization of hydrophobic hydration during cold and pressure denaturation. The Journal of Physical Chemistry. B. 116: 5342-8. PMID 22512347 DOI: 10.1016/J.Bpj.2011.11.2484  0.676
2011 Matysiak S, Debenedetti PG, Rossky PJ. Dissecting the energetics of hydrophobic hydration of polypeptides. The Journal of Physical Chemistry. B. 115: 14859-65. PMID 22035038 DOI: 10.1021/Jp2079633  0.32
2008 Matysiak S, Clementi C, Praprotnik M, Kremer K, Delle Site L. Modeling diffusive dynamics in adaptive resolution simulation of liquid water. The Journal of Chemical Physics. 128: 024503. PMID 18205455 DOI: 10.1063/1.2819486  0.638
2008 Matysiak S, Clementi C. Mapping folding energy landscapes with theory and experiment. Archives of Biochemistry and Biophysics. 469: 29-33. PMID 17910943 DOI: 10.1016/J.Abb.2007.08.019  0.658
2007 Praprotnik M, Matysiak S, Site LD, Kremer K, Clementi C. Adaptive resolution simulation of liquid water Journal of Physics: Condensed Matter. 19: 292201. DOI: 10.1088/0953-8984/19/29/292201  0.645
2006 Matysiak S, Clementi C. Minimalist protein model as a diagnostic tool for misfolding and aggregation. Journal of Molecular Biology. 363: 297-308. PMID 16959265 DOI: 10.1016/J.Jmb.2006.07.088  0.661
2006 Matysiak S, Montesi A, Pasquali M, Kolomeisky AB, Clementi C. Dynamics of polymer translocation through nanopores: theory meets experiment. Physical Review Letters. 96: 118103. PMID 16605877 DOI: 10.1103/Physrevlett.96.118103  0.585
2005 Das P, Matysiak S, Clementi C. Balancing energy and entropy: a minimalist model for the characterization of protein folding landscapes. Proceedings of the National Academy of Sciences of the United States of America. 102: 10141-6. PMID 16006532 DOI: 10.1073/Pnas.0409471102  0.754
2004 Matysiak S, Clementi C. Optimal combination of theory and experiment for the characterization of the protein folding landscape of S6: how far can a minimalist model go? Journal of Molecular Biology. 343: 235-48. PMID 15381433 DOI: 10.1016/J.Jmb.2004.08.006  0.659
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