Manpreet S. Katari, Ph.D. - Publications

Affiliations: 
2004 Stony Brook University, Stony Brook, NY, United States 
Area:
Genetics

18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Obertello M, Shrivastava S, Katari MS, Coruzzi GM. Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice. Plant Physiology. 168: 1830-43. PMID 26045464 DOI: 10.1104/pp.114.255877  0.96
2015 Li Y, Mukherjee I, Thum KE, Tanurdzic M, Katari MS, Obertello M, Edwards MB, McCombie WR, Martienssen RA, Coruzzi GM. The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology. 16: 79. PMID 25928034 DOI: 10.1186/s13059-015-0640-2  0.6
2013 Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. Bmc Genomics. 14: 701. PMID 24119003 DOI: 10.1186/1471-2164-14-701  0.6
2013 Gifford ML, Banta JA, Katari MS, Hulsmans J, Chen L, Ristova D, Tranchina D, Purugganan MD, Coruzzi GM, Birnbaum KD. Plasticity regulators modulate specific root traits in discrete nitrogen environments. Plos Genetics. 9: e1003760. PMID 24039603 DOI: 10.1371/journal.pgen.1003760  0.6
2011 Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R. A functional phylogenomic view of the seed plants. Plos Genetics. 7: e1002411. PMID 22194700 DOI: 10.1371/journal.pgen.1002411  0.6
2010 Obertello M, Krouk G, Katari MS, Runko SJ, Coruzzi GM. Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis. Bmc Systems Biology. 4: 111. PMID 20704717 DOI: 10.1186/1752-0509-4-111  0.96
2010 Cibrián-Jaramillo A, De la Torre-Bárcena JE, Lee EK, Katari MS, Little DP, Stevenson DW, Martienssen R, Coruzzi GM, DeSalle R. Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution. Genome Biology and Evolution. 2: 225-39. PMID 20624728 DOI: 10.1093/gbe/evq012  0.6
2010 Katari MS, Nowicki SD, Aceituno FF, Nero D, Kelfer J, Thompson LP, Cabello JM, Davidson RS, Goldberg AP, Shasha DE, Coruzzi GM, Gutiérrez RA. VirtualPlant: a software platform to support systems biology research. Plant Physiology. 152: 500-15. PMID 20007449 DOI: 10.1104/pp.109.147025  0.6
2009 Nero D, Katari MS, Kelfer J, Tranchina D, Coruzzi GM. In silico evaluation of predicted regulatory interactions in Arabidopsis thaliana. Bmc Bioinformatics. 10: 435. PMID 20025756 DOI: 10.1186/1471-2105-10-435  0.6
2009 de la Torre-Bárcena JE, Kolokotronis SO, Lee EK, Stevenson DW, Brenner ED, Katari MS, Coruzzi GM, DeSalle R. The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data. Plos One. 4: e5764. PMID 19503618 DOI: 10.1371/journal.pone.0005764  0.6
2008 Thum KE, Shin MJ, Gutiérrez RA, Mukherjee I, Katari MS, Nero D, Shasha D, Coruzzi GM. An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis. Bmc Systems Biology. 2: 31. PMID 18387196 DOI: 10.1186/1752-0509-2-31  0.6
2008 Gutiérrez RA, Stokes TL, Thum K, Xu X, Obertello M, Katari MS, Tanurdzic M, Dean A, Nero DC, McClung CR, Coruzzi GM. Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. Proceedings of the National Academy of Sciences of the United States of America. 105: 4939-44. PMID 18344319 DOI: 10.1073/pnas.0800211105  0.6
2007 Poultney CS, Gutiérrez RA, Katari MS, Gifford ML, Paley WB, Coruzzi GM, Shasha DE. Sungear: interactive visualization and functional analysis of genomic datasets. Bioinformatics (Oxford, England). 23: 259-61. PMID 17018536 DOI: 10.1093/bioinformatics/btl496  0.6
2006 de la Torre JE, Egan MG, Katari MS, Brenner ED, Stevenson DW, Coruzzi GM, DeSalle R. ESTimating plant phylogeny: lessons from partitioning. Bmc Evolutionary Biology. 6: 48. PMID 16776834 DOI: 10.1186/1471-2148-6-48  0.6
2005 Brenner ED, Katari MS, Stevenson DW, Rudd SA, Douglas AW, Moss WN, Twigg RW, Runko SJ, Stellari GM, McCombie WR, Coruzzi GM. EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes. Bmc Genomics. 6: 143. PMID 16225698 DOI: 10.1186/1471-2164-6-143  0.6
2005 Katari MS, Balija V, Wilson RK, Martienssen RA, McCombie WR. Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. Genome Research. 15: 496-504. PMID 15805491 DOI: 10.1101/gr.3239105  0.56
2003 Brenner ED, Stevenson DW, McCombie RW, Katari MS, Rudd SA, Mayer KF, Palenchar PM, Runko SJ, Twigg RW, Dai G, Martienssen RA, Benfey PN, Coruzzi GM. Expressed sequence tag analysis in Cycas, the most primitive living seed plant. Genome Biology. 4: R78. PMID 14659015 DOI: 10.1186/gb-2003-4-12-r78  0.6
2001 Wines ME, Lee L, Katari MS, Zhang L, DeRossi C, Shi Y, Perkins S, Feldman M, McCombie WR, Holdener BC. Identification of mesoderm development (mesd) candidate genes by comparative mapping and genome sequence analysis. Genomics. 72: 88-98. PMID 11247670 DOI: 10.1006/geno.2000.6466  0.6
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