Manpreet S. Katari, Ph.D. - Publications

2004 Stony Brook University, Stony Brook, NY, United States 

26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Brooks MD, Juang CL, Katari MS, Alvarez JM, Pasquino A, Shih HJ, Huang J, Shanks C, Cirrone J, Coruzzi GM. ConnecTF: A platform to integrate transcription factor-gene interactions and validate regulatory networks. Plant Physiology. 185: 49-66. PMID 33631799 DOI: 10.1093/plphys/kiaa012  0.77
2021 Brenner ED, Scheid PE, DeGrazia J, Geltzeiler AR, Katari MS. Using the Integrated Genome Viewer to reveal amplicon-derived polymorphism enriched at the phenylthiocarbamide locus in the teaching lab. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. PMID 33426769 DOI: 10.1002/bmb.21479  0.677
2019 Heerah S, Katari MS, Penjor R, Coruzzi GM, Marshall-Colon A. WRKY1 mediates transcriptional regulation of light and nitrogen signaling pathways. Plant Physiology. PMID 31409699 DOI: 10.1104/Pp.19.00685  0.818
2019 Tripathi L, Tripathi JN, Shah T, Muiruri KS, Katari M. Molecular Basis of Disease Resistance in Banana Progenitor Musa balbisiana against Xanthomonas campestris pv. musacearum. Scientific Reports. 9: 7007. PMID 31065041 DOI: 10.1038/S41598-019-43421-1  0.314
2017 Amuge T, Berger DK, Katari MS, Myburg AA, Goldman SL, Ferguson ME. A time series transcriptome analysis of cassava (Manihot esculenta Crantz) varieties challenged with Ugandan cassava brown streak virus. Scientific Reports. 7: 9747. PMID 28852026 DOI: 10.1038/S41598-017-09617-Z  0.375
2016 Murphy M, Chatterjee SS, Jain S, Katari M, DasGupta R. TCF7L1 Modulates Colorectal Cancer Growth by Inhibiting Expression of the Tumor-Suppressor Gene EPHB3. Scientific Reports. 6: 28299. PMID 27333864 DOI: 10.1038/Srep28299  0.379
2015 Obertello M, Shrivastava S, Katari MS, Coruzzi GM. Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice. Plant Physiology. 168: 1830-43. PMID 26045464 DOI: 10.1104/Pp.114.255877  0.794
2015 Li Y, Mukherjee I, Thum KE, Tanurdzic M, Katari MS, Obertello M, Edwards MB, McCombie WR, Martienssen RA, Coruzzi GM. The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants. Genome Biology. 16: 79. PMID 25928034 DOI: 10.1186/S13059-015-0640-2  0.754
2013 Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. Bmc Genomics. 14: 701. PMID 24119003 DOI: 10.1186/1471-2164-14-701  0.841
2013 Gifford ML, Banta JA, Katari MS, Hulsmans J, Chen L, Ristova D, Tranchina D, Purugganan MD, Coruzzi GM, Birnbaum KD. Plasticity regulators modulate specific root traits in discrete nitrogen environments. Plos Genetics. 9: e1003760. PMID 24039603 DOI: 10.1371/Journal.Pgen.1003760  0.757
2011 Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R. A functional phylogenomic view of the seed plants. Plos Genetics. 7: e1002411. PMID 22194700 DOI: 10.1371/Journal.Pgen.1002411  0.827
2010 Obertello M, Krouk G, Katari MS, Runko SJ, Coruzzi GM. Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis. Bmc Systems Biology. 4: 111. PMID 20704717 DOI: 10.1186/1752-0509-4-111  0.799
2010 Cibrián-Jaramillo A, De la Torre-Bárcena JE, Lee EK, Katari MS, Little DP, Stevenson DW, Martienssen R, Coruzzi GM, DeSalle R. Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution. Genome Biology and Evolution. 2: 225-39. PMID 20624728 DOI: 10.1093/Gbe/Evq012  0.725
2010 Katari MS, Nowicki SD, Aceituno FF, Nero D, Kelfer J, Thompson LP, Cabello JM, Davidson RS, Goldberg AP, Shasha DE, Coruzzi GM, Gutiérrez RA. VirtualPlant: a software platform to support systems biology research. Plant Physiology. 152: 500-15. PMID 20007449 DOI: 10.1104/Pp.109.147025  0.809
2009 Nero D, Katari MS, Kelfer J, Tranchina D, Coruzzi GM. In silico evaluation of predicted regulatory interactions in Arabidopsis thaliana. Bmc Bioinformatics. 10: 435. PMID 20025756 DOI: 10.1186/1471-2105-10-435  0.799
2009 de la Torre-Bárcena JE, Kolokotronis SO, Lee EK, Stevenson DW, Brenner ED, Katari MS, Coruzzi GM, DeSalle R. The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data. Plos One. 4: e5764. PMID 19503618 DOI: 10.1371/Journal.Pone.0005764  0.811
2009 Coruzzi GM, Burga AR, Katari MS, Gutiérrez RA. Systems Biology: Principles and Applications in Plant Research Annual Plant Reviews. 35: 1-40. DOI: 10.1002/9781444312249.ch1  0.564
2008 Thum KE, Shin MJ, Gutiérrez RA, Mukherjee I, Katari MS, Nero D, Shasha D, Coruzzi GM. An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis. Bmc Systems Biology. 2: 31. PMID 18387196 DOI: 10.1186/1752-0509-2-31  0.776
2008 Gutiérrez RA, Stokes TL, Thum K, Xu X, Obertello M, Katari MS, Tanurdzic M, Dean A, Nero DC, McClung CR, Coruzzi GM. Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. Proceedings of the National Academy of Sciences of the United States of America. 105: 4939-44. PMID 18344319 DOI: 10.1073/Pnas.0800211105  0.771
2007 Poultney CS, Gutiérrez RA, Katari MS, Gifford ML, Paley WB, Coruzzi GM, Shasha DE. Sungear: interactive visualization and functional analysis of genomic datasets. Bioinformatics (Oxford, England). 23: 259-61. PMID 17018536 DOI: 10.1093/Bioinformatics/Btl496  0.793
2006 de la Torre JE, Egan MG, Katari MS, Brenner ED, Stevenson DW, Coruzzi GM, DeSalle R. ESTimating plant phylogeny: lessons from partitioning. Bmc Evolutionary Biology. 6: 48. PMID 16776834 DOI: 10.1186/1471-2148-6-48  0.766
2005 Brenner ED, Katari MS, Stevenson DW, Rudd SA, Douglas AW, Moss WN, Twigg RW, Runko SJ, Stellari GM, McCombie WR, Coruzzi GM. EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes. Bmc Genomics. 6: 143. PMID 16225698 DOI: 10.1186/1471-2164-6-143  0.836
2005 Katari MS, Balija V, Wilson RK, Martienssen RA, McCombie WR. Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. Genome Research. 15: 496-504. PMID 15805491 DOI: 10.1101/Gr.3239105  0.671
2003 Brenner ED, Stevenson DW, McCombie RW, Katari MS, Rudd SA, Mayer KF, Palenchar PM, Runko SJ, Twigg RW, Dai G, Martienssen RA, Benfey PN, Coruzzi GM. Expressed sequence tag analysis in Cycas, the most primitive living seed plant. Genome Biology. 4: R78. PMID 14659015 DOI: 10.1186/Gb-2003-4-12-R78  0.801
2003 Cannon SB, McCombie WR, Sato S, Tabata S, Denny R, Palmer L, Katari M, Young ND, Stacey G. Evolution and microsynteny of the apyrase gene family in three legume genomes Molecular Genetics and Genomics. 270: 347-361. PMID 14598165 DOI: 10.1007/S00438-003-0928-X  0.689
2001 Wines ME, Lee L, Katari MS, Zhang L, DeRossi C, Shi Y, Perkins S, Feldman M, McCombie WR, Holdener BC. Identification of mesoderm development (mesd) candidate genes by comparative mapping and genome sequence analysis. Genomics. 72: 88-98. PMID 11247670 DOI: 10.1006/Geno.2000.6466  0.612
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