| Year |
Citation |
Score |
| 2024 |
Ranjan R, Srijan S, Balekuttira S, Agarwal T, Ramey M, Dobbins M, Kuhn R, Wang X, Hudson K, Li Y, Varala K. Organ-delimited gene regulatory networks provide high accuracy in candidate transcription factor selection across diverse processes. Proceedings of the National Academy of Sciences of the United States of America. 121: e2322751121. PMID 38652750 DOI: 10.1073/pnas.2322751121 |
0.775 |
|
| 2023 |
Stevenson DW, Ramakrishnan S, Alves CS, Coelho LA, Kramer M, Goodwin S, Ramos OM, Eshel G, Sondervan VM, Frangos S, Zumajo-Cardona C, Jenike K, Ou S, Wang X, Lee YP, ... ... Varala K, et al. The genome of the Wollemi pine, a critically endangered "living fossil" unchanged since the Cretaceous, reveals extensive ancient transposon activity. Biorxiv : the Preprint Server For Biology. PMID 37662366 DOI: 10.1101/2023.08.24.554647 |
0.785 |
|
| 2023 |
Agarwal T, Wang X, Mildenhall F, Ibrahim IM, Puthiyaveetil S, Varala K. Chilling stress drives organ-specific transcriptional cascades and dampens diurnal oscillation in tomato. Horticulture Research. 10: uhad137. PMID 37564269 DOI: 10.1093/hr/uhad137 |
0.763 |
|
| 2022 |
Li L, Garsamo M, Yuan J, Wang X, Lam SH, Varala K, Boavida LC, Zhou Y, Liu X. CAND1 is required for pollen viability in -a test of the adaptive exchange hypothesis. Frontiers in Plant Science. 13: 866086. PMID 35968124 DOI: 10.3389/fpls.2022.866086 |
0.561 |
|
| 2022 |
Dussarrat T, Prigent S, Latorre C, Bernillon S, Flandin A, Díaz FP, Cassan C, Van Delft P, Jacob D, Varala K, Joubes J, Gibon Y, Rolin D, Gutiérrez RA, Pétriacq P. Predictive metabolomics of multiple Atacama plant species unveils a core set of generic metabolites for extreme climate resilience. The New Phytologist. PMID 35288949 DOI: 10.1111/nph.18095 |
0.573 |
|
| 2021 |
Eshel G, Araus V, Undurraga S, Soto DC, Moraga C, Montecinos A, Moyano T, Maldonado J, Díaz FP, Varala K, Nelson CW, Contreras-López O, Pal-Gabor H, Kraiser T, Carrasco-Puga G, et al. Plant ecological genomics at the limits of life in the Atacama Desert. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34725254 DOI: 10.1073/pnas.2101177118 |
0.76 |
|
| 2021 |
Cheng CY, Li Y, Varala K, Bubert J, Huang J, Kim GJ, Halim J, Arp J, Shih HS, Levinson G, Park SH, Cho HY, Moose SP, Coruzzi GM. Evolutionarily informed machine learning enhances the power of predictive gene-to-phenotype relationships. Nature Communications. 12: 5627. PMID 34561450 DOI: 10.1038/s41467-021-25893-w |
0.785 |
|
| 2021 |
McCoy RM, Julian R, Kumar SRV, Ranjan R, Varala K, Li Y. A Systems Biology Approach to Identify Essential Epigenetic Regulators for Specific Biological Processes in Plants. Plants (Basel, Switzerland). 10. PMID 33668664 DOI: 10.3390/plants10020364 |
0.541 |
|
| 2020 |
Alvarez JM, Schinke AL, Brooks MD, Pasquino A, Leonelli L, Varala K, Safi A, Krouk G, Krapp A, Coruzzi GM. Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade. Nature Communications. 11: 1157. PMID 32123177 DOI: 10.1038/S41467-020-14979-6 |
0.748 |
|
| 2019 |
Brooks MD, Cirrone J, Pasquino AV, Alvarez JM, Swift J, Mittal S, Juang CL, Varala K, Gutiérrez RA, Krouk G, Shasha D, Coruzzi GM. Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions. Nature Communications. 10: 1569. PMID 30952851 DOI: 10.1038/S41467-019-09522-1 |
0.79 |
|
| 2018 |
Varala K, Marshall-Colón A, Cirrone J, Brooks MD, Pasquino AV, Léran S, Mittal S, Rock TM, Edwards MB, Kim GJ, Ruffel S, McCombie WR, Shasha D, Coruzzi GM. Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants. Proceedings of the National Academy of Sciences of the United States of America. PMID 29769331 DOI: 10.1073/Pnas.1721487115 |
0.781 |
|
| 2016 |
Doidy J, Li Y, Neymotin B, Edwards MB, Varala K, Gresham D, Coruzzi GM. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". Bmc Genomics. 17: 92. PMID 26843062 DOI: 10.1186/S12864-016-2410-2 |
0.826 |
|
| 2015 |
Varala K, Li Y, Marshall-Colón A, Para A, Coruzzi GM. "Hit-and-Run" leaves its mark: Catalyst transcription factors and chromatin modification. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 26108710 DOI: 10.1002/Bies.201400205 |
0.805 |
|
| 2015 |
Li Y, Varala K, Coruzzi GM. From milliseconds to lifetimes: tracking the dynamic behavior of transcription factors in gene networks. Trends in Genetics : Tig. 31: 509-15. PMID 26072453 DOI: 10.1016/J.Tig.2015.05.005 |
0.744 |
|
| 2014 |
Delaux PM, Varala K, Edger PP, Coruzzi GM, Pires JC, Ané JM. Comparative phylogenomics uncovers the impact of symbiotic associations on host genome evolution. Plos Genetics. 10: e1004487. PMID 25032823 DOI: 10.1371/Journal.Pgen.1004487 |
0.672 |
|
| 2014 |
Para A, Li Y, Marshall-Colón A, Varala K, Francoeur NJ, Moran TM, Edwards MB, Hackley C, Bargmann BO, Birnbaum KD, McCombie WR, Krouk G, Coruzzi GM. Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 111: 10371-6. PMID 24958886 DOI: 10.1073/Pnas.1404657111 |
0.817 |
|
| 2014 |
Li Y, Varala K, Hudson ME. A survey of the small RNA population during far-red light-induced apical hook opening. Frontiers in Plant Science. 5: 156. PMID 24808898 DOI: 10.3389/Fpls.2014.00156 |
0.452 |
|
| 2014 |
Léran S, Varala K, Boyer JC, Chiurazzi M, Crawford N, Daniel-Vedele F, David L, Dickstein R, Fernandez E, Forde B, Gassmann W, Geiger D, Gojon A, Gong JM, Halkier BA, et al. A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants. Trends in Plant Science. 19: 5-9. PMID 24055139 DOI: 10.1016/J.Tplants.2013.08.008 |
0.555 |
|
| 2012 |
Li Y, Varala K, Moose SP, Hudson ME. The inheritance pattern of 24 nt siRNA clusters in arabidopsis hybrids is influenced by proximity to transposable elements. Plos One. 7: e47043. PMID 23118865 DOI: 10.1371/Journal.Pone.0047043 |
0.44 |
|
| 2012 |
Zabala G, Campos E, Varala KK, Bloomfield S, Jones SI, Win H, Tuteja JH, Calla B, Clough SJ, Hudson M, Vodkin LO. Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max. Bmc Plant Biology. 12: 177. PMID 23031057 DOI: 10.1186/1471-2229-12-177 |
0.332 |
|
| 2011 |
Varala K, Swaminathan K, Li Y, Hudson ME. Rapid genotyping of soybean cultivars using high throughput sequencing. Plos One. 6: e24811. PMID 21949759 DOI: 10.1371/Journal.Pone.0024811 |
0.404 |
|
| 2011 |
Woodard SH, Fischman BJ, Venkat A, Hudson ME, Varala K, Cameron SA, Clark AG, Robinson GE. Genes involved in convergent evolution of eusociality in bees. Proceedings of the National Academy of Sciences of the United States of America. 108: 7472-7. PMID 21482769 DOI: 10.1073/Pnas.1103457108 |
0.434 |
|
| 2010 |
Toth AL, Varala K, Henshaw MT, Rodriguez-Zas SL, Hudson ME, Robinson GE. Brain transcriptomic analysis in paper wasps identifies genes associated with behaviour across social insect lineages. Proceedings. Biological Sciences / the Royal Society. 277: 2139-48. PMID 20236980 DOI: 10.1098/Rspb.2010.0090 |
0.403 |
|
| 2010 |
Swaminathan K, Alabady MS, Varala K, De Paoli E, Ho I, Rokhsar DS, Arumuganathan AK, Ming R, Green PJ, Meyers BC, Moose SP, Hudson ME. Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses. Genome Biology. 11: R12. PMID 20128909 DOI: 10.1186/Gb-2010-11-2-R12 |
0.329 |
|
| 2009 |
Schwarz D, Robertson HM, Feder JL, Varala K, Hudson ME, Ragland GJ, Hahn DA, Berlocher SH. Sympatric ecological speciation meets pyrosequencing: sampling the transcriptome of the apple maggot Rhagoletis pomonella. Bmc Genomics. 10: 633. PMID 20035631 DOI: 10.1186/1471-2164-10-633 |
0.421 |
|
| 2009 |
Tuteja JH, Zabala G, Varala K, Hudson M, Vodkin LO. Endogenous, tissue-specific short interfering RNAs silence the chalcone synthase gene family in glycine max seed coats. The Plant Cell. 21: 3063-77. PMID 19820189 DOI: 10.1105/Tpc.109.069856 |
0.334 |
|
| 2007 |
Toth AL, Varala K, Newman TC, Miguez FE, Hutchison SK, Willoughby DA, Simons JF, Egholm M, Hunt JH, Hudson ME, Robinson GE. Wasp gene expression supports an evolutionary link between maternal behavior and eusociality. Science (New York, N.Y.). 318: 441-4. PMID 17901299 DOI: 10.1126/Science.1146647 |
0.401 |
|
| 2007 |
Swaminathan K, Varala K, Hudson ME. Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey Bmc Genomics. 8. PMID 17524145 DOI: 10.1186/1471-2164-8-132 |
0.323 |
|
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