| Year |
Citation |
Score |
| 2024 |
Fan Z, Zhang R, Zhou A, Hey J, Song Y, Osada N, Hamada Y, Yue B, Xing J, Li J. Genomic Evidence for the Complex Evolutionary History of Macaques (Genus Macaca). Journal of Molecular Evolution. PMID 38634872 DOI: 10.1007/s00239-024-10166-z |
0.311 |
|
| 2023 |
Sun S, Aboelenain M, Ariad D, Haywood ME, Wageman CR, Duke M, Bag A, Viotti M, Katz-Jaffe M, McCoy RC, Schindler K, Xing J. Identifying risk variants for embryo aneuploidy using ultra-low coverage whole-genome sequencing from preimplantation genetic testing. American Journal of Human Genetics. 110: 2092-2102. PMID 38029743 DOI: 10.1016/j.ajhg.2023.11.002 |
0.364 |
|
| 2023 |
Rybacki K, Xia M, Ahsan MU, Xing J, Wang K. Assessing the Expression of Long INterspersed Elements (LINEs) via Long-Read Sequencing in Diverse Human Tissues and Cell Lines. Genes. 14. PMID 37895242 DOI: 10.3390/genes14101893 |
0.307 |
|
| 2023 |
Sun S, Aboelenain M, Ariad D, Haywood ME, Wageman CR, Duke M, Bag A, Viotti M, Katz-Jaffe M, McCoy RC, Schindler K, Xing J. Identifying risk genes for embryo aneuploidy using ultra-low coverage whole-genome sequencing. Medrxiv : the Preprint Server For Health Sciences. PMID 37546814 DOI: 10.1101/2023.07.22.23292618 |
0.356 |
|
| 2023 |
Zhang C, Wang L, Dou L, Yue B, Xing J, Li J. Transposable Elements Shape the Genome Diversity and the Evolution of Noctuidae Species. Genes. 14. PMID 37372423 DOI: 10.3390/genes14061244 |
0.446 |
|
| 2022 |
Shrestha D, Bag A, Wu R, Zhang Y, Tang X, Qi Q, Xing J, Cheng Y. Genomics and epigenetics guided identification of tissue-specific genomic safe harbors. Genome Biology. 23: 199. PMID 36131352 DOI: 10.1186/s13059-022-02770-3 |
0.35 |
|
| 2022 |
Zhang RS, Zhou C, Jin XL, Liu KH, Fan ZX, Xing JC, Li J. Chromosome-level genome assembly of Tibetan macaque ( ) and species-specific structural variations. Zoological Research. 43: 880-885. PMID 36052552 DOI: 10.24272/j.issn.2095-8137.2022.149 |
0.328 |
|
| 2022 |
Paulat NS, McGuire E, Subramanian K, Osmanski AB, Moreno-Santillán DD, Ray DA, Xing J. Transposable Elements in Bats Show Differential Accumulation Patterns Determined by Class and Functionality. Life (Basel, Switzerland). 12. PMID 36013369 DOI: 10.3390/life12081190 |
0.652 |
|
| 2020 |
Dyment DA, O'Donnell-Luria A, Agrawal PB, Coban Akdemir Z, Aleck KA, Antaki D, Al Sharhan H, Au PB, Aydin H, Beggs AH, Bilguvar K, Boerwinkle E, Brand H, Brownstein CA, Buyske S, ... ... Xing J, et al. Alternative genomic diagnoses for individuals with a clinical diagnosis of Dubowitz syndrome. American Journal of Medical Genetics. Part A. PMID 33098347 DOI: 10.1002/ajmg.a.61926 |
0.347 |
|
| 2020 |
Li J, Fan Z, Shen F, Pendleton AL, Song Y, Xing J, Yue B, Kidd JM, Li J. Genomic copy number variation study of nine Macaca species provides new insights into their genetic divergence, adaptation and biomedical application. Genome Biology and Evolution. PMID 32970804 DOI: 10.1093/gbe/evaa200 |
0.371 |
|
| 2020 |
Yan CC, Zhang XS, Zhou L, Yang Q, Zhou M, Zhang LW, Xing JC, Yan ZF, Price M, Li J, Yue BS, Fan ZX. Effects of aging on gene expression in blood of captive Tibetan macaques ( ) and comparisons with expression in humans. Zoological Research. 1-6. PMID 32746507 DOI: 10.24272/J.Issn.2095-8137.2020.092 |
0.32 |
|
| 2020 |
Cao X, Zhang Y, Payer LM, Lords H, Steranka JP, Burns KH, Xing J. Polymorphic mobile element insertions contribute to gene expression and alternative splicing in human tissues. Genome Biology. 21: 185. PMID 32718348 DOI: 10.1186/S13059-020-02101-4 |
0.458 |
|
| 2020 |
Qiu S, Liu H, Jian Z, Fan Z, Liu S, Xing J, Li J. Characterization of the primate TRIM gene family reveals the recent evolution in primates. Molecular Genetics and Genomics : Mgg. PMID 32564135 DOI: 10.1007/S00438-020-01698-2 |
0.427 |
|
| 2020 |
Du L, Guo T, Liu Q, Li J, Zhang X, Xing J, Yue B, Li J, Fan Z. MACSNVdb: a high-quality SNV database for interspecies genetic divergence investigation among macaques. Database : the Journal of Biological Databases and Curation. 2020. PMID 32367112 DOI: 10.1093/Database/Baaa027 |
0.466 |
|
| 2020 |
Loh JW, Ha H, Lin T, Sun N, Burns KH, Xing J. Integrated Mobile Element Scanning (ME-Scan) method for identifying multiple types of polymorphic mobile element insertions. Mobile Dna. 11: 12. PMID 32110248 DOI: 10.1186/S13100-020-00207-X |
0.579 |
|
| 2019 |
Oppenheim S, Cao X, Rueppel O, Krongdang S, Phokasem P, DeSalle R, Goodwin S, Xing J, Chantawannakul P, Rosenfeld J. Whole Genome Sequencing and Assembly of the Asian Honey Bee Apis dorsata. Genome Biology and Evolution. PMID 31860080 DOI: 10.1093/Gbe/Evz277 |
0.529 |
|
| 2019 |
Zhou A, Lin T, Xing J. Evaluating nanopore sequencing data processing pipelines for structural variation identification. Genome Biology. 20: 237. PMID 31727126 DOI: 10.1186/S13059-019-1858-1 |
0.455 |
|
| 2019 |
Feusier J, Watkins WS, Thomas J, Farrell A, Witherspoon DJ, Baird L, Ha H, Xing J, Jorde LB. Pedigree-based estimation of human mobile element retrotransposition rates. Genome Research. 29: 1567-1577. PMID 31575651 DOI: 10.1101/Gr.247965.118 |
0.453 |
|
| 2019 |
Vazquez BN, Thackray JK, Simonet NG, Chahar S, Kane-Goldsmith N, Newkirk SJ, Lee S, Xing J, Verzi MP, An W, Vaquero A, Tischfield JA, Serrano L. SIRT7 mediates L1 elements transcriptional repression and their association with the nuclear lamina. Nucleic Acids Research. PMID 31226208 DOI: 10.1093/Nar/Gkz519 |
0.355 |
|
| 2019 |
Willsey J, Fernandez T, Yu D, King R, Dietrich A, Xing J, Sanders S, Mandell J, Neale B, Coppola G, Mathews C, Tischfield J, Scharf J, State M, Heiman G. De Novo Coding Variants Are Strongly Associated with Tourette Syndrome European Neuropsychopharmacology. 29. DOI: 10.1016/J.Euroneuro.2017.06.065 |
0.356 |
|
| 2018 |
Peng C, Niu L, Deng J, Yu J, Zhang X, Zhou C, Xing J, Li J. Can-SINE dynamics in the giant panda and three other Caniformia genomes. Mobile Dna. 9: 32. PMID 30455747 DOI: 10.1186/S13100-018-0137-0 |
0.536 |
|
| 2018 |
Regier AA, Farjoun Y, Larson DE, Krasheninina O, Kang HM, Howrigan DP, Chen BJ, Kher M, Banks E, Ames DC, English AC, Li H, Xing J, Zhang Y, Matise T, et al. Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects. Nature Communications. 9: 4038. PMID 30279509 DOI: 10.1038/S41467-018-06159-4 |
0.521 |
|
| 2018 |
Wang S, Mandell JD, Kumar Y, Sun N, Morris MT, Arbelaez J, Nasello C, Dong S, Duhn C, Zhao X, Yang Z, Padmanabhuni SS, Yu D, King RA, Dietrich A, ... ... Xing J, et al. De Novo Sequence and Copy Number Variants Are Strongly Associated with Tourette Disorder and Implicate Cell Polarity in Pathogenesis. Cell Reports. 24: 3441-3454.e12. PMID 30257206 DOI: 10.1016/J.Celrep.2018.08.082 |
0.395 |
|
| 2018 |
Fan Z, Zhou A, Osada N, Yu J, Jiang J, Li P, Du L, Niu L, Deng J, Xu H, Xing J, Yue B, Li J. Ancient hybridization and admixture in macaques (genus Macaca) inferred from whole genome sequences. Molecular Phylogenetics and Evolution. PMID 29614345 DOI: 10.1016/J.Ympev.2018.03.038 |
0.465 |
|
| 2017 |
Sun N, Nasello C, Deng L, Wang N, Zhang Y, Xu Z, Song Z, Kwan K, King RA, Pang ZP, Xing J, Heiman GA, Tischfield JA. The PNKD gene is associated with Tourette Disorder or Tic disorder in a multiplex family. Molecular Psychiatry. PMID 28894297 DOI: 10.1038/Mp.2017.179 |
0.365 |
|
| 2017 |
Wang N, Zhang Y, Gedvilaite E, Loh JW, Lin T, Liu X, Liu CG, Kumar D, Donnelly R, Raymond K, Schuchman EH, Sleat DE, Lobel P, Xing J. Using whole exome sequencing to investigate the genetic bases of lysosomal storage diseases of unknown etiology. Human Mutation. PMID 28703315 DOI: 10.1002/Humu.23291 |
0.324 |
|
| 2017 |
Rustagi N, Zhou A, Watkins WS, Gedvilaite E, Wang S, Ramesh N, Muzny D, Gibbs RA, Jorde LB, Yu F, Xing J. Extremely low-coverage whole genome sequencing in South Asians captures population genomics information. Bmc Genomics. 18: 396. PMID 28532386 DOI: 10.1186/S12864-017-3767-6 |
0.478 |
|
| 2017 |
Willsey AJ, Fernandez TV, Yu D, King RA, Dietrich A, Xing J, Sanders SJ, Mandell JD, Huang AY, Richer P, Smith L, Dong S, Samocha KE, et al. De Novo Coding Variants Are Strongly Associated with Tourette Disorder. Neuron. 94: 486-499.e9. PMID 28472652 DOI: 10.1016/J.Neuron.2017.04.024 |
0.352 |
|
| 2016 |
Alexander J, Potamianou H, Xing J, Deng L, Karagiannidis I, Tsetsos F, Drineas P, Tarnok Z, Rizzo R, Wolanczyk T, Farkas L, Nagy P, Szymanska U, Androutsos C, Tsironi V, et al. Targeted Re-Sequencing Approach of Candidate Genes Implicates Rare Potentially Functional Variants in Tourette Syndrome Etiology. Frontiers in Neuroscience. 10: 428. PMID 27708560 DOI: 10.3389/Fnins.2016.00428 |
0.421 |
|
| 2016 |
Sleat DE, Gedvilaite E, Zhang Y, Lobel P, Xing J. Analysis of large-scale whole exome sequencing data to determine the prevalence of genetically-distinct forms of neuronal ceroid lipofuscinosis. Gene. PMID 27553520 DOI: 10.1016/J.Gene.2016.08.031 |
0.375 |
|
| 2016 |
Ha H, Loh JW, Xing J. Identification of polymorphic SVA retrotransposons using a mobile element scanning method for SVA (ME-Scan-SVA). Mobile Dna. 7: 15. PMID 27478512 DOI: 10.1186/S13100-016-0072-X |
0.585 |
|
| 2016 |
Bruse S, Moreau M, Bromberg Y, Jang JH, Wang N, Ha H, Picchi M, Lin Y, Langley RJ, Qualls C, Klensney-Tait J, Zabner J, Leng S, Mao J, Belinsky SA, ... Xing J, et al. Whole exome sequencing identifies novel candidate genes that modify chronic obstructive pulmonary disease susceptibility. Human Genomics. 10: 1. PMID 26744305 DOI: 10.1186/S40246-015-0058-7 |
0.358 |
|
| 2016 |
Marin D, Bohrer C, Zhang Y, Zhan Y, Scott R, Xing J, Treff N. Maternal whole exome sequencing reveals candidate pathways for embryonic aneuploidy risk Fertility and Sterility. 106: e374. DOI: 10.1016/J.Fertnstert.2016.07.1064 |
0.325 |
|
| 2015 |
Fan Z, Silva P, Gronau I, Wang S, Armero AS, Schweizer RM, Ramirez O, Pollinger J, Galaverni M, Ortega Del-Vecchyo D, Du L, Zhang W, Zhang Z, Xing J, Vilá C, et al. Worldwide patterns of genomic variation and admixture in gray wolves. Genome Research. PMID 26680994 DOI: 10.1101/Gr.197517.115 |
0.425 |
|
| 2015 |
Parrish NF, Fujino K, Shiromoto Y, Iwasaki YW, Ha H, Xing J, Makino A, Kuramochi-Miyagawa S, Nakano T, Siomi H, Honda T, Tomonaga K. piRNAs derived from ancient viral processed pseudogenes as transgenerational sequence-specific immune memory in mammals. Rna (New York, N.Y.). PMID 26283688 DOI: 10.1261/Rna.052092.115 |
0.364 |
|
| 2015 |
Ha H, Wang N, Xing J. Library Construction for High-Throughput Mobile Element Identification and Genotyping. Methods in Molecular Biology (Clifton, N.J.). PMID 26025622 DOI: 10.1007/7651_2015_265 |
0.553 |
|
| 2015 |
Platt RN, Zhang Y, Witherspoon DJ, Xing J, Suh A, Keith MS, Jorde LB, Stevens RD, Ray DA. Targeted Capture of Phylogenetically Informative Ves SINE Insertions in Genus Myotis. Genome Biology and Evolution. 7: 1664-75. PMID 26014613 DOI: 10.1093/Gbe/Evv099 |
0.689 |
|
| 2014 |
Song J, Liu J, Schnakenberg SL, Ha H, Xing J, Chen KC. Variation in piRNA and transposable element content in strains of Drosophila melanogaster. Genome Biology and Evolution. 6: 2786-98. PMID 25267446 DOI: 10.1093/Gbe/Evu217 |
0.438 |
|
| 2014 |
Ha H, Song J, Wang S, Kapusta A, Feschotte C, Chen KC, Xing J. A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements. Bmc Genomics. 15: 545. PMID 24981367 DOI: 10.1186/1471-2164-15-545 |
0.392 |
|
| 2014 |
Hu H, Roach JC, Coon H, Guthery SL, Voelkerding KV, Margraf RL, Durtschi JD, Tavtigian SV, Shankaracharya, Wu W, Scheet P, Wang S, Xing J, Glusman G, Hubley R, et al. A unified test of linkage analysis and rare-variant association for analysis of pedigree sequence data. Nature Biotechnology. 32: 663-9. PMID 24837662 DOI: 10.1038/Nbt.2895 |
0.476 |
|
| 2014 |
Fan Z, Zhao G, Li P, Osada N, Xing J, Yi Y, Du L, Silva P, Wang H, Sakate R, Zhang X, Xu H, Yue B, Li J. Whole-genome sequencing of tibetan macaque (Macaca Thibetana) provides new insight into the macaque evolutionary history. Molecular Biology and Evolution. 31: 1475-89. PMID 24648498 DOI: 10.1093/Molbev/Msu104 |
0.546 |
|
| 2014 |
Wuren T, Simonson TS, Qin G, Xing J, Huff CD, Witherspoon DJ, Jorde LB, Ge RL. Shared and unique signals of high-altitude adaptation in geographically distinct Tibetan populations. Plos One. 9: e88252. PMID 24642866 DOI: 10.1371/Journal.Pone.0088252 |
0.367 |
|
| 2014 |
Kwak Y, Kim Y, Xing J, Han K. Erratum to: Evolutionary fate of SVA2 elements in primate genomes Genes & Genomics. 37: 313-314. DOI: 10.1007/S13258-014-0245-2 |
0.685 |
|
| 2014 |
Kwak Y, Kim Y, Xing J, Han K. Evolutionary fate of SVA2 elements in primate genomes Genes & Genomics. 37: 153-159. DOI: 10.1007/S13258-014-0241-6 |
0.752 |
|
| 2013 |
Wang S, Xing J. A primer for disease gene prioritization using next-generation sequencing data. Genomics & Informatics. 11: 191-9. PMID 24465230 DOI: 10.5808/Gi.2013.11.4.191 |
0.429 |
|
| 2013 |
Wang S, Lachance J, Tishkoff SA, Hey J, Xing J. Apparent variation in Neanderthal admixture among African populations is consistent with gene flow from Non-African populations. Genome Biology and Evolution. 5: 2075-81. PMID 24162011 DOI: 10.1093/Gbe/Evt160 |
0.387 |
|
| 2013 |
Xing J, Wuren T, Simonson TS, Watkins WS, Witherspoon DJ, Wu W, Qin G, Huff CD, Jorde LB, Ge RL. Genomic analysis of natural selection and phenotypic variation in high-altitude mongolians. Plos Genetics. 9: e1003634. PMID 23874230 DOI: 10.1371/Journal.Pgen.1003634 |
0.507 |
|
| 2013 |
Ge RL, Cai Q, Shen YY, San A, Ma L, Zhang Y, Yi X, Chen Y, Yang L, Huang Y, He R, Hui Y, Hao M, Li Y, Wang B, ... ... Xing J, et al. Draft genome sequence of the Tibetan antelope. Nature Communications. 4: 1858. PMID 23673643 DOI: 10.1038/Ncomms2860 |
0.636 |
|
| 2013 |
Witherspoon DJ, Zhang Y, Xing J, Watkins WS, Ha H, Batzer MA, Jorde LB. Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations. Genome Research. 23: 1170-81. PMID 23599355 DOI: 10.1101/Gr.148973.112 |
0.695 |
|
| 2013 |
Xing J, Witherspoon DJ, Jorde LB. Mobile element biology: new possibilities with high-throughput sequencing. Trends in Genetics : Tig. 29: 280-9. PMID 23312846 DOI: 10.1016/J.Tig.2012.12.002 |
0.551 |
|
| 2012 |
Kim W, Londono D, Zhou L, Xing J, Nato AQ, Musolf A, Matise TC, Finch SJ, Gordon D. Single-variant and multi-variant trend tests for genetic association with next-generation sequencing that are robust to sequencing error. Human Heredity. 74: 172-83. PMID 23594495 DOI: 10.1159/000346824 |
0.36 |
|
| 2012 |
Watkins WS, Xing J, Huff C, Witherspoon DJ, Zhang Y, Perego UA, Woodward SR, Jorde LB. Genetic analysis of ancestry, admixture and selection in Bolivian and Totonac populations of the New World. Bmc Genetics. 13: 39. PMID 22606979 DOI: 10.1186/1471-2156-13-39 |
0.35 |
|
| 2012 |
Stringham SA, Mulroy EE, Xing J, Record D, Guernsey MW, Aldenhoven JT, Osborne EJ, Shapiro MD. Divergence, convergence, and the ancestry of feral populations in the domestic rock pigeon. Current Biology : Cb. 22: 302-8. PMID 22264611 DOI: 10.1016/J.Cub.2011.12.045 |
0.373 |
|
| 2012 |
Lyon G, Jiang T, Wijk RV, Wang W, Bodily P, Xing J, Tian L, Robison R, Clement M, Yang L, Zhang P, Liu Y, Moore B, Solinge Wv, Yandell M, et al. Whole exome sequencing reveals the genetic basis of a case of idiopathic hemolytic anemia and suggests candidate rare variants for ADHD in a Utah pedigree F1000research. 3. DOI: 10.7490/F1000Research.1089758.1 |
0.342 |
|
| 2011 |
Stewart C, Kural D, Strömberg MP, Walker JA, Konkel MK, Stütz AM, Urban AE, Grubert F, Lam HY, Lee WP, Busby M, Indap AR, Garrison E, Huff C, Xing J, et al. A comprehensive map of mobile element insertion polymorphisms in humans. Plos Genetics. 7: e1002236. PMID 21876680 DOI: 10.1371/Journal.Pgen.1002236 |
0.708 |
|
| 2011 |
Yandell M, Huff C, Hu H, Singleton M, Moore B, Xing J, Jorde LB, Reese MG. A probabilistic disease-gene finder for personal genomes. Genome Research. 21: 1529-42. PMID 21700766 DOI: 10.1101/Gr.123158.111 |
0.406 |
|
| 2011 |
Rope AF, Wang K, Evjenth R, Xing J, Johnston JJ, Swensen JJ, Johnson WE, Moore B, Huff CD, Bird LM, Carey JC, Opitz JM, Stevens CA, Jiang T, Schank C, et al. Using VAAST to identify an X-linked disorder resulting in lethality in male infants due to N-terminal acetyltransferase deficiency. American Journal of Human Genetics. 89: 28-43. PMID 21700266 DOI: 10.1016/J.Ajhg.2011.05.017 |
0.343 |
|
| 2011 |
Roos C, Zinner D, Kubatko LS, Schwarz C, Yang M, Meyer D, Nash SD, Xing J, Batzer MA, Brameier M, Leendertz FH, Ziegler T, Perwitasari-Farajallah D, Nadler T, Walter L, et al. Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys. Bmc Evolutionary Biology. 11: 77. PMID 21435245 DOI: 10.1186/1471-2148-11-77 |
0.645 |
|
| 2011 |
Huff CD, Witherspoon DJ, Simonson TS, Xing J, Watkins WS, Zhang Y, Tuohy TM, Neklason DW, Burt RW, Guthery SL, Woodward SR, Jorde LB. Maximum-likelihood estimation of recent shared ancestry (ERSA). Genome Research. 21: 768-74. PMID 21324875 DOI: 10.1101/Gr.115972.110 |
0.389 |
|
| 2011 |
Simonson TS, Xing J, Barrett R, Jerah E, Loa P, Zhang Y, Watkins WS, Witherspoon DJ, Huff CD, Woodward S, Mowry B, Jorde LB. Ancestry of the Iban is predominantly Southeast Asian: genetic evidence from autosomal, mitochondrial, and Y chromosomes. Plos One. 6: e16338. PMID 21305013 DOI: 10.1371/Journal.Pone.0016338 |
0.439 |
|
| 2010 |
Xing J, Watkins WS, Hu Y, Huff CD, Sabo A, Muzny DM, Bamshad MJ, Gibbs RA, Jorde LB, Yu F. Genetic diversity in India and the inference of Eurasian population expansion. Genome Biology. 11: R113. PMID 21106085 DOI: 10.1186/Gb-2010-11-11-R113 |
0.341 |
|
| 2010 |
Xing J, Watkins WS, Shlien A, Walker E, Huff CD, Witherspoon DJ, Zhang Y, Simonson TS, Weiss RB, Schiffman JD, Malkin D, Woodward SR, Jorde LB. Toward a more uniform sampling of human genetic diversity: a survey of worldwide populations by high-density genotyping. Genomics. 96: 199-210. PMID 20643205 DOI: 10.1016/J.Ygeno.2010.07.004 |
0.371 |
|
| 2010 |
Witherspoon DJ, Xing J, Zhang Y, Watkins WS, Batzer MA, Jorde LB. Mobile element scanning (ME-Scan) by targeted high-throughput sequencing. Bmc Genomics. 11: 410. PMID 20591181 DOI: 10.1186/1471-2164-11-410 |
0.703 |
|
| 2010 |
Simonson TS, Yang Y, Huff CD, Yun H, Qin G, Witherspoon DJ, Bai Z, Lorenzo FR, Xing J, Jorde LB, Prchal JT, Ge R. Genetic evidence for high-altitude adaptation in Tibet. Science (New York, N.Y.). 329: 72-5. PMID 20466884 DOI: 10.1126/Science.1189406 |
0.407 |
|
| 2010 |
Simonson TS, Zhang Y, Huff CD, Xing J, Watkins WS, Witherspoon DJ, Woodward SR, Jorde LB. Limited distribution of a cardiomyopathy-associated variant in India. Annals of Human Genetics. 74: 184-8. PMID 20201939 DOI: 10.1111/J.1469-1809.2010.00561.X |
0.335 |
|
| 2010 |
Huff CD, Xing J, Rogers AR, Witherspoon D, Jorde LB. Mobile elements reveal small population size in the ancient ancestors of Homo sapiens. Proceedings of the National Academy of Sciences of the United States of America. 107: 2147-52. PMID 20133859 DOI: 10.1073/Pnas.0909000107 |
0.538 |
|
| 2009 |
Witherspoon DJ, Watkins WS, Zhang Y, Xing J, Tolpinrud WL, Hedges DJ, Batzer MA, Jorde LB. Alu repeats increase local recombination rates. Bmc Genomics. 10: 530. PMID 19917129 DOI: 10.1186/1471-2164-10-530 |
0.765 |
|
| 2009 |
Damert A, Raiz J, Horn AV, Löwer J, Wang H, Xing J, Batzer MA, Löwer R, Schumann GG. 5'-Transducing SVA retrotransposon groups spread efficiently throughout the human genome. Genome Research. 19: 1992-2008. PMID 19652014 DOI: 10.1101/Gr.093435.109 |
0.729 |
|
| 2009 |
Li J, Han K, Xing J, Kim HS, Rogers J, Ryder OA, Disotell T, Yue B, Batzer MA. Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements. Gene. 448: 242-9. PMID 19497354 DOI: 10.1016/J.Gene.2009.05.013 |
0.749 |
|
| 2009 |
Xing J, Zhang Y, Han K, Salem AH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S, Batzer MA, Jorde LB. Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 19: 1516-26. PMID 19439515 DOI: 10.1101/Gr.091827.109 |
0.806 |
|
| 2009 |
Xing J, Watkins WS, Witherspoon DJ, Zhang Y, Guthery SL, Thara R, Mowry BJ, Bulayeva K, Weiss RB, Jorde LB. Fine-scaled human genetic structure revealed by SNP microarrays. Genome Research. 19: 815-25. PMID 19411602 DOI: 10.1101/Gr.085589.108 |
0.387 |
|
| 2008 |
Xing J, Watkins WS, Zhang Y, Witherspoon DJ, Jorde LB. High fidelity of whole-genome amplified DNA on high-density single nucleotide polymorphism arrays. Genomics. 92: 452-6. PMID 18786630 DOI: 10.1016/J.Ygeno.2008.08.007 |
0.425 |
|
| 2008 |
Xing J, Witherspoon DJ, Watkins WS, Zhang Y, Tolpinrud W, Jorde LB. HapMap tagSNP transferability in multiple populations: general guidelines. Genomics. 92: 41-51. PMID 18482828 DOI: 10.1016/J.Ygeno.2008.03.011 |
0.385 |
|
| 2007 |
Xing J, Witherspoon DJ, Ray DA, Batzer MA, Jorde LB. Mobile DNA elements in primate and human evolution. American Journal of Physical Anthropology. 2-19. PMID 18046749 DOI: 10.1002/Ajpa.20722 |
0.797 |
|
| 2007 |
Han K, Konkel MK, Xing J, Wang H, Lee J, Meyer TJ, Huang CT, Sandifer E, Hebert K, Barnes EW, Hubley R, Miller W, Smit AF, Ullmer B, Batzer MA. Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome. Science (New York, N.Y.). 316: 238-40. PMID 17431169 DOI: 10.1126/Science.1139462 |
0.813 |
|
| 2007 |
Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, ... ... Xing J, et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science (New York, N.Y.). 316: 222-34. PMID 17431167 DOI: 10.1126/Science.1139247 |
0.778 |
|
| 2007 |
Xing J, Wang H, Zhang Y, Ray DA, Tosi AJ, Disotell TR, Batzer MA. A mobile element-based evolutionary history of guenons (tribe Cercopithecini). Bmc Biology. 5: 5. PMID 17266768 DOI: 10.1186/1741-7007-5-5 |
0.719 |
|
| 2007 |
Herke SW, Xing J, Ray DA, Zimmerman JW, Cordaux R, Batzer MA. A SINE-based dichotomous key for primate identification. Gene. 390: 39-51. PMID 17056208 DOI: 10.1016/J.Gene.2006.08.015 |
0.756 |
|
| 2006 |
Ray DA, Xing J, Salem AH, Batzer MA. SINEs of a nearly perfect character. Systematic Biology. 55: 928-35. PMID 17345674 DOI: 10.1080/10635150600865419 |
0.691 |
|
| 2006 |
Xing J, Wang H, Belancio VP, Cordaux R, Deininger PL, Batzer MA. Emergence of primate genes by retrotransposon-mediated sequence transduction. Proceedings of the National Academy of Sciences of the United States of America. 103: 17608-13. PMID 17101974 DOI: 10.1073/Pnas.0603224103 |
0.781 |
|
| 2005 |
Wang H, Xing J, Grover D, Hedges DJ, Han K, Walker JA, Batzer MA. SVA elements: a hominid-specific retroposon family. Journal of Molecular Biology. 354: 994-1007. PMID 16288912 DOI: 10.1016/J.Jmb.2005.09.085 |
0.833 |
|
| 2005 |
Hedges DJ, Cordaux R, Xing J, Witherspoon DJ, Rogers AR, Jorde LB, Batzer MA. Modeling the amplification dynamics of human Alu retrotransposons. Plos Computational Biology. 1: e44. PMID 16201008 DOI: 10.1371/Journal.Pcbi.0010044 |
0.802 |
|
| 2005 |
Xing J, Wang H, Han K, Ray DA, Huang CH, Chemnick LG, Stewart CB, Disotell TR, Ryder OA, Batzer MA. A mobile element based phylogeny of Old World monkeys. Molecular Phylogenetics and Evolution. 37: 872-80. PMID 15936216 DOI: 10.1016/J.Ympev.2005.04.015 |
0.815 |
|
| 2005 |
Han K, Xing J, Wang H, Hedges DJ, Garber RK, Cordaux R, Batzer MA. Under the genomic radar: the stealth model of Alu amplification. Genome Research. 15: 655-64. PMID 15867427 DOI: 10.1101/Gr.3492605 |
0.844 |
|
| 2005 |
Ray DA, Xing J, Hedges DJ, Hall MA, Laborde ME, Anders BA, White BR, Stoilova N, Fowlkes JD, Landry KE, Chemnick LG, Ryder OA, Batzer MA. Alu insertion loci and platyrrhine primate phylogeny. Molecular Phylogenetics and Evolution. 35: 117-26. PMID 15737586 DOI: 10.1016/J.Ympev.2004.10.023 |
0.841 |
|
| 2004 |
Xing J, Hedges DJ, Han K, Wang H, Cordaux R, Batzer MA. Alu element mutation spectra: molecular clocks and the effect of DNA methylation. Journal of Molecular Biology. 344: 675-82. PMID 15533437 DOI: 10.1016/J.Jmb.2004.09.058 |
0.795 |
|
| 2004 |
Hedges DJ, Callinan PA, Cordaux R, Xing J, Barnes E, Batzer MA. Differential alu mobilization and polymorphism among the human and chimpanzee lineages. Genome Research. 14: 1068-75. PMID 15173113 DOI: 10.1101/Gr.2530404 |
0.816 |
|
| 2004 |
Walker JA, Garber RK, Hedges DJ, Kilroy GE, Xing J, Batzer MA. Resolution of mixed human DNA samples using mitochondrial DNA sequence variants. Analytical Biochemistry. 325: 171-3. PMID 14715300 DOI: 10.1016/J.Ab.2003.10.003 |
0.735 |
|
| 2003 |
Xing J, Salem AH, Hedges DJ, Kilroy GE, Watkins WS, Schienman JE, Stewart CB, Jurka J, Jorde LB, Batzer MA. Comprehensive analysis of two Alu Yd subfamilies. Journal of Molecular Evolution. 57: S76-89. PMID 15008405 DOI: 10.1007/S00239-003-0009-0 |
0.835 |
|
| 2003 |
Callinan PA, Hedges DJ, Salem AH, Xing J, Walker JA, Garber RK, Watkins WS, Bamshad MJ, Jorde LB, Batzer MA. Comprehensive analysis of Alu-associated diversity on the human sex chromosomes. Gene. 317: 103-10. PMID 14604797 DOI: 10.1016/S0378-1119(03)00662-0 |
0.781 |
|
| 2003 |
Salem AH, Ray DA, Xing J, Callinan PA, Myers JS, Hedges DJ, Garber RK, Witherspoon DJ, Jorde LB, Batzer MA. Alu elements and hominid phylogenetics. Proceedings of the National Academy of Sciences of the United States of America. 100: 12787-91. PMID 14561894 DOI: 10.1073/Pnas.2133766100 |
0.794 |
|
| 2003 |
Walker JA, Kilroy GE, Xing J, Shewale J, Sinha SK, Batzer MA. Human DNA quantitation using Alu element-based polymerase chain reaction. Analytical Biochemistry. 315: 122-8. PMID 12672420 DOI: 10.1016/S0003-2697(03)00081-2 |
0.627 |
|
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